* [gentoo-commits] proj/sci:vtk commit in: /
@ 2013-07-11 20:26 Justin Lecher
2013-06-26 14:55 ` [gentoo-commits] proj/sci:master " Justin Lecher
` (2 more replies)
0 siblings, 3 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:26 UTC (permalink / raw
To: gentoo-commits
commit: 9fb3b01bb87df3f976ef259d9aa4a09012ac4988
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Jun 26 14:54:49 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jun 26 14:54:49 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=9fb3b01b
Merge branch 'master-broken'
* master-broken:
sci-chemistry/ucsf-tools: Fix compilation with latest gcc
sci-chemistry/modeller: Fix lib position, #474696
sci-chemistry/pymol: Update repo uri
sci-chemistry/pymol: Update repo uri
^ permalink raw reply [flat|nested] 28+ messages in thread* [gentoo-commits] proj/sci:vtk commit in: /
@ 2013-07-11 20:27 Justin Lecher
0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:27 UTC (permalink / raw
To: gentoo-commits
commit: ffbc434cc003a1d815b290608ba3e4e5e371d20c
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Jul 11 18:31:57 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Jul 11 18:31:57 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=ffbc434c
Merge branch 'jlec'
* jlec:
sci-chemistry/coot: Update pc patch
sci-chemistry/coot/ChangeLog | 3 +
sci-chemistry/coot/files/9999-pc.patch | 561 +++++++++++++++++----------------
2 files changed, 284 insertions(+), 280 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:vtk commit in: /
@ 2013-07-11 20:27 Justin Lecher
0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:27 UTC (permalink / raw
To: gentoo-commits
commit: 68f704a5acc2a2db8dd7eae6fd683576af41e28c
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Jul 8 12:07:04 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jul 8 12:07:04 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=68f704a5
Merge branch 'jlec'
* jlec:
Completly removed the directory check in the java source (we have everything under control in gentoo). Removed the .py extension from the -system.patch to make that part working again (it's installed without extensions to /usr/bin/!).
Work in progress Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-chemistry/rosetta: Fix: Ebuild calls die in a subshell
sci-chemistry/rosetta: Add patches from www.csrosetta.org
update to new lange patches Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-chemistry/shiftx2/ChangeLog | 8 +-
...xes.patch => shiftx2-1.07_p20120106-java.patch} | 45 +++-
.../files/shiftx2-1.07_p20120106-system.patch | 231 +++++++++++++++++++++
.../shiftx2/shiftx2-1.07_p20120106.ebuild | 30 ++-
4 files changed, 299 insertions(+), 15 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:vtk commit in: /
@ 2013-07-11 20:27 Justin Lecher
0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:27 UTC (permalink / raw
To: gentoo-commits
commit: 521c3879e88d373f4eb885af030528caa867d7e8
Author: Sébastien Fabbro <bicatali <AT> gentoo <DOT> org>
AuthorDate: Tue Jul 9 23:48:53 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jul 9 23:48:53 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=521c3879
Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
licenses/mpich | 39 ----------------------
sci-physics/lammps/ChangeLog | 12 +++++++
sci-physics/lammps/Manifest | 1 +
...mmps-20130701.ebuild => lammps-20130708.ebuild} | 16 +++++++--
4 files changed, 26 insertions(+), 42 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:vtk commit in: /
@ 2013-07-11 20:27 Justin Lecher
0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:27 UTC (permalink / raw
To: gentoo-commits
commit: f1dcaee3267c375546293c9210d39b80c00c4ca1
Author: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Sun Jul 7 23:30:15 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jul 7 23:30:15 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f1dcaee3
Merge branch 'master' of ssh://github.com/gentoo-science/sci
sci-libs/libgeodecomp/Manifest | 1 +
...bgeodecomp-0.1.0.ebuild => libgeodecomp-0.2.0.ebuild} | 16 +++++++++++++---
2 files changed, 14 insertions(+), 3 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:vtk commit in: /
@ 2013-07-11 20:27 Justin Lecher
0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:27 UTC (permalink / raw
To: gentoo-commits
commit: bafcd12ba1034dd265fe4ac8d4f8497afdef8fe3
Author: Justin <jlec <AT> j-schmitz <DOT> net>
AuthorDate: Sun Jul 7 14:06:03 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jul 7 14:06:03 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=bafcd12b
Merge pull request #89 from gentryx/master
Added ebuild for LibGeoDecomp 0.2.0
sci-libs/libgeodecomp/Manifest | 1 +
...bgeodecomp-0.1.0.ebuild => libgeodecomp-0.2.0.ebuild} | 16 +++++++++++++---
2 files changed, 14 insertions(+), 3 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:vtk commit in: /
@ 2013-07-11 20:27 Justin Lecher
0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:27 UTC (permalink / raw
To: gentoo-commits
commit: f8f8325388e6a8978ef271640515a144b53a8ed5
Author: Andreas Schäfer <gentryx <AT> gmx <DOT> de>
AuthorDate: Sat Jul 6 20:33:34 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Jul 6 20:33:34 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f8f83253
Merge /usr/local/portage/andis_overlay
sci-libs/libgeodecomp/Manifest | 1 +
...bgeodecomp-0.1.0.ebuild => libgeodecomp-0.2.0.ebuild} | 16 +++++++++++++---
2 files changed, 14 insertions(+), 3 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:vtk commit in: /
@ 2013-07-11 20:27 Justin Lecher
0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:27 UTC (permalink / raw
To: gentoo-commits
commit: 9fbdb4ae6a0b9287dc4b9417e2ca7ced7b26c60b
Author: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Thu Jul 4 19:10:29 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Jul 4 19:10:29 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=9fbdb4ae
Merge branch 'master' of ssh://github.com/gentoo-science/sci
dev-util/amdapp/amdapp-2.8.ebuild | 19 ++++++-
dev-util/intel-ocl-sdk/Manifest | 1 +
.../intel-ocl-sdk/intel-ocl-sdk-3.0.67279.ebuild | 65 ++++++++++++++++++++++
dev-util/intel-ocl-sdk/metadata.xml | 17 ++++++
media-gfx/brlcad/ChangeLog | 3 +
media-gfx/brlcad/Manifest | 1 +
6 files changed, 103 insertions(+), 3 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:vtk commit in: /
@ 2013-07-11 20:27 Justin Lecher
0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:27 UTC (permalink / raw
To: gentoo-commits
commit: 7a1714a356cddb1aa2bb3ca5773328f973fe56b2
Author: Justin <jlec <AT> j-schmitz <DOT> net>
AuthorDate: Thu Jul 4 06:18:51 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Jul 4 06:18:51 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7a1714a3
Merge pull request #87 from gentryx/master
Fixed ebuild for AMDAPP and added updated ebuild for Intel OpenCL SDK
dev-util/amdapp/amdapp-2.8.ebuild | 19 ++++++-
dev-util/intel-ocl-sdk/Manifest | 1 +
.../intel-ocl-sdk/intel-ocl-sdk-3.0.67279.ebuild | 65 ++++++++++++++++++++++
dev-util/intel-ocl-sdk/metadata.xml | 17 ++++++
4 files changed, 99 insertions(+), 3 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:vtk commit in: /
@ 2013-07-11 20:27 Justin Lecher
0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:27 UTC (permalink / raw
To: gentoo-commits
commit: 637e2d028af727c3d7c0ab09bb29bdd0f80beeb7
Author: Andreas Schäfer <gentryx <AT> gmx <DOT> de>
AuthorDate: Wed Jul 3 19:57:02 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jul 3 19:57:02 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=637e2d02
Merge /usr/local/portage/andis_overlay
dev-util/intel-ocl-sdk/metadata.xml | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)
^ permalink raw reply [flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:vtk commit in: /
@ 2013-07-11 20:27 Justin Lecher
0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:27 UTC (permalink / raw
To: gentoo-commits
commit: 76e58b23060b68622a22a9812e954a44a9c7037b
Author: Sébastien Fabbro <bicatali <AT> gentoo <DOT> org>
AuthorDate: Wed Jul 3 19:57:29 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jul 3 19:57:29 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=76e58b23
Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
sci-physics/lammps/ChangeLog | 9 +++
sci-physics/lammps/Manifest | 1 +
sci-physics/lammps/lammps-20130701.ebuild | 105 ++++++++++++++++++++++++++++++
sci-physics/lammps/metadata.xml | 31 +++++++++
sys-cluster/charm/ChangeLog | 7 ++
sys-cluster/charm/charm-6.5.1.ebuild | 46 ++++++++-----
sys-cluster/charm/metadata.xml | 3 +
7 files changed, 184 insertions(+), 18 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:vtk commit in: /
@ 2013-07-11 20:27 Justin Lecher
0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:27 UTC (permalink / raw
To: gentoo-commits
commit: f2d3e656f959b32f0c70626924c0dc06de747be5
Author: Andreas Schäfer <gentryx <AT> gmx <DOT> de>
AuthorDate: Wed Jul 3 19:53:51 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jul 3 19:53:51 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f2d3e656
Merge /usr/local/portage/andis_overlay
dev-util/amdapp/amdapp-2.8.ebuild | 6 ++++--
dev-util/intel-ocl-sdk/intel-ocl-sdk-3.0.67279.ebuild | 10 +++++++---
2 files changed, 11 insertions(+), 5 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:vtk commit in: /
@ 2013-07-11 20:27 Justin Lecher
0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:27 UTC (permalink / raw
To: gentoo-commits
commit: 70ee018686f6160008c53cc8e59ff3ce06612260
Author: Andreas Schäfer <gentryx <AT> gmx <DOT> de>
AuthorDate: Wed Jul 3 03:54:22 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jul 3 03:54:22 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=70ee0186
Merge /usr/local/portage/andis_overlay
dev-util/amdapp/amdapp-2.8.ebuild | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:vtk commit in: /
@ 2013-07-11 20:27 Justin Lecher
0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:27 UTC (permalink / raw
To: gentoo-commits
commit: c5d9b66462d9cc0c9a17de7c4e95c85f12701a23
Author: Nicolas Bock <nicolasbock <AT> gmail <DOT> com>
AuthorDate: Wed Jul 3 16:40:40 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jul 3 16:40:40 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=c5d9b664
Merge branch 'master' of github.com:gentoo-science/sci
sci-geosciences/pydap/ChangeLog | 8 ++++-
sci-geosciences/pydap/Manifest | 2 +-
sci-geosciences/pydap/metadata.xml | 12 +++----
sci-geosciences/pydap/pydap-3.0.3.ebuild | 34 -------------------
sci-geosciences/pydap/pydap-3.1.ebuild | 38 ++++++++++++++++++++++
sci-libs/armadillo/ChangeLog | 6 ++++
sci-libs/armadillo/Manifest | 2 +-
...llo-3.820.1.ebuild => armadillo-3.900.6.ebuild} | 2 +-
sci-libs/mlpack/ChangeLog | 6 ++++
sci-libs/mlpack/Manifest | 2 +-
.../{mlpack-1.0.5.ebuild => mlpack-1.0.6.ebuild} | 0
11 files changed, 67 insertions(+), 45 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread* [gentoo-commits] proj/sci:vtk commit in: /
@ 2013-07-11 20:26 Justin Lecher
0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:26 UTC (permalink / raw
To: gentoo-commits
commit: 0dbff7dea8ebc8bfc1b3708ba59cfcee34e0273c
Author: Andreas Schäfer <gentryx <AT> gmx <DOT> de>
AuthorDate: Tue Jul 2 20:03:06 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jul 2 20:03:06 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0dbff7de
Merge https://github.com/gentoo-science/sci
app-doc/root-docs/ChangeLog | 6 +
app-doc/root-docs/Manifest | 2 +-
...ocs-5.34.08.ebuild => root-docs-5.34.09.ebuild} | 2 +-
metadata/layout.conf | 6 +
sci-chemistry/ambertools/ChangeLog | 4 +-
sci-chemistry/ambertools/ambertools-12.ebuild | 2 +-
sci-chemistry/pymol-plugins-ezviz/ChangeLog | 5 +
...uild => pymol-plugins-ezviz-1.0.2005-r1.ebuild} | 1 +
sci-libs/bigdft-abi/ChangeLog | 8 +
...abi-1.0.4.ebuild => bigdft-abi-1.0.4-r1.ebuild} | 3 +
.../files/bigdft-abi-1.0.4-CUDA_gethostname.patch | 22 +++
sci-libs/msms/ChangeLog | 10 +-
sci-libs/msms/Manifest | 3 +-
sci-libs/msms/metadata.xml | 2 +-
sci-libs/msms/msms-1.5.4-r1.ebuild | 54 ------
.../{msms-1.5.6_rc2.ebuild => msms-1.5.6.ebuild} | 19 +--
sci-mathematics/ufc/ChangeLog | 5 +-
sci-mathematics/ufc/ufc-1.4.2.ebuild | 4 +-
sci-physics/root/ChangeLog | 6 +
sci-physics/root/Manifest | 5 +-
sci-physics/root/metadata.xml | 1 +
.../{root-5.34.08.ebuild => root-5.34.09.ebuild} | 15 +-
sys-cluster/charm/ChangeLog | 13 ++
sys-cluster/charm/Manifest | 1 +
sys-cluster/charm/charm-6.5.1.ebuild | 181 +++++++++++++++++++++
.../charm/files/charm-6.5.0-charmc-gentoo.patch | 25 +++
sys-cluster/charm/metadata.xml | 15 ++
sys-cluster/empi/ChangeLog | 14 ++
.../empi/{empi-0.8.ebuild => empi-0.9.ebuild} | 14 +-
.../empi/files/{ChangeLog-0.8 => ChangeLog-0.9} | 0
sys-cluster/empi/files/{empi-0.8 => empi-0.9} | 4 +-
.../files/{eselect.mpi-0.8 => eselect.mpi-0.9} | 0
sys-cluster/empi/metadata.xml | 8 +-
sys-cluster/hpl/ChangeLog | 8 +
sys-cluster/hpl/Manifest | 3 +-
.../hpl/{hpl-2.0-r1.ebuild => hpl-2.1.ebuild} | 33 ++--
sys-cluster/openmpi/ChangeLog | 11 +-
...le-malloc-override-inside-of-Gentoo-sandb.patch | 42 +++++
...penmpi-1.6.4.ebuild => openmpi-1.6.4-r1.ebuild} | 4 +-
39 files changed, 451 insertions(+), 110 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread* [gentoo-commits] proj/sci:vtk commit in: /
@ 2013-07-11 20:26 Justin Lecher
0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:26 UTC (permalink / raw
To: gentoo-commits
commit: 01912d585cd65e73ab596d080e2debe61de19930
Author: Andreas Schäfer <gentryx <AT> gmx <DOT> de>
AuthorDate: Tue Jul 2 20:02:52 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jul 2 20:02:52 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=01912d58
Merge /usr/local/portage/andis_overlay
dev-util/amdapp/amdapp-2.8.ebuild | 3 ++-
dev-util/intel-ocl-sdk/intel-ocl-sdk-3.0.67279.ebuild | 6 ++++--
2 files changed, 6 insertions(+), 3 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:vtk commit in: /
@ 2013-07-11 20:26 Justin Lecher
0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:26 UTC (permalink / raw
To: gentoo-commits
commit: fcddbe9646bf40e7743f3505b5cdca29d766ae4d
Author: Andreas Schäfer <gentryx <AT> gmx <DOT> de>
AuthorDate: Thu Jun 27 22:13:41 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Jun 27 22:13:41 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=fcddbe96
Merge /usr/local/portage/andis_overlay
dev-util/amdapp/amdapp-2.8.ebuild | 10 +++-
dev-util/intel-ocl-sdk/Manifest | 1 +
.../intel-ocl-sdk/intel-ocl-sdk-3.0.67279.ebuild | 59 ++++++++++++++++++++++
dev-util/intel-ocl-sdk/metadata.xml | 14 +++++
4 files changed, 83 insertions(+), 1 deletion(-)
^ permalink raw reply [flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:vtk commit in: /
@ 2013-07-11 20:26 Justin Lecher
0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:26 UTC (permalink / raw
To: gentoo-commits
commit: f964406968cbe45f9268653af44c2dc6b52baadd
Author: Sébastien Fabbro <bicatali <AT> gentoo <DOT> org>
AuthorDate: Wed Jun 26 15:26:34 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jun 26 15:26:34 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f9644069
Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
dev-lang/ispc/ChangeLog | 3 ++
dev-lang/ispc/ispc-9999.ebuild | 3 +-
sci-chemistry/gnome-chemistry-utils/ChangeLog | 4 ++
.../gnome-chemistry-utils-0.14.2.ebuild | 2 +-
sci-chemistry/gnome-chemistry-utils/metadata.xml | 8 ++--
sci-chemistry/modeller/ChangeLog | 4 ++
...ller-9.12-r1.ebuild => modeller-9.12-r2.ebuild} | 3 +-
sci-chemistry/pymol/ChangeLog | 3 ++
sci-chemistry/pymol/pymol-9999.ebuild | 2 +-
sci-chemistry/ucsf-tools/ChangeLog | 3 ++
sci-chemistry/ucsf-tools/ucsf-tools-9999.ebuild | 13 +++++-
sci-physics/lammps/ChangeLog | 3 ++
sci-physics/lammps/lammps-20130526.ebuild | 25 +++++------
sys-cluster/charm/ChangeLog | 3 ++
sys-cluster/charm/charm-6.5.0.ebuild | 51 ++++++++--------------
...orline.patch => modules-3.2.10-errorline.patch} | 1 -
.../modules/files/modules-3.2.9c-errorline.patch | 1 -
sys-cluster/modules/modules-3.2.10.ebuild | 6 +--
18 files changed, 79 insertions(+), 59 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:vtk commit in: /
@ 2013-07-11 20:26 Justin Lecher
0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:26 UTC (permalink / raw
To: gentoo-commits
commit: e2667d72a9cda457057fc4531574c2634dc92387
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Jun 21 10:44:31 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Jun 21 10:44:31 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e2667d72
Merge branch 'master' into jlec
* master: (29 commits)
sci-chemistry/shiftx: Block shiftx2 at runtime
sci-chemistry/shiftx: Fix patch and add patch for buffer overflow fix
The announced, but forgotten, change in sci-libs/fox-4.1.2-r2 actually done.
The announced, but forgotten, change in sci-libs/etsf_io-1.0.3-r2 actually done.
sci-physics/abinit/files/6.12.3-gui-makefiles.tbz put back, its deletion was a mistake.
sci-libs/trilinos: Version bump and rewrite
sci-libs/coinor-clp: Version bump and patch for mpi
For sci-libs/bigdft-abi and sci-physics/bigdft, filter LDFLAGS for cuda use not to break nvcc.
To sci-libs/bigdft-abi and sci-physics/bigdft added dev-util/gdbus-codegen among dependencies.
Spaces in the testing snippet of fortran code in sci-libs/bigdft-abi-1.0.4.ebuild protected from reformatting.
fixed qt4 build
fixing manifests
big fixes of metadata and package sub-herd re-distribution
sci-physics/openmx upgraded to 3.7.3 with some openMP and MPI C/F90 juggling, previous sci-physics/openmx-3.6 preserved for the time being.
sci-chemistry/talosn: drop upstream path in favour of our
sci-chemistry/modeller: Fix broken symlink, #473680
sci-chemistry/mics: New package
sci-chemistry/talosn: New package
Abinit & friends upgraded to sci-physics/abinit-7.2.2. BigDFT moved from sci-libs to sci-physics, sci-physics/abinit uses sci-libs/bigdft-abi instead. Usage of LIBDIR/finclude abandoned in favour of /usr/include, as mostly used upstream. Old files cleaned up.
Version of bigdft bumped to 1.7_pre24, moved from sci-libs to sci-physics. No longer used as a library by sci-physics/abinit. Usage of LIBDIR/finclude abandoned in favour of /usr/include, as used upstream.
...
app-text/dgs/metadata.xml | 3 -
app-text/jabref/ChangeLog | 10 +
...jabref-2.10b.ebuild => jabref-2.10_beta.ebuild} | 8 +-
app-vim/freefem++-syntax/metadata.xml | 7 +-
app-vim/vim-gromacs/metadata.xml | 5 +-
dev-db/cppdb/metadata.xml | 19 +-
dev-libs/simclist/metadata.xml | 17 +-
dev-ml/mlgmpidl/metadata.xml | 23 +-
dev-ml/ocamlgraph/metadata.xml | 47 ++-
dev-ml/zarith/metadata.xml | 20 +-
dev-perl/opal-client/metadata.xml | 3 -
dev-python/opal-client/metadata.xml | 5 +-
dev-tcltk/img_rotate/metadata.xml | 5 +-
dev-tcltk/togl/metadata.xml | 3 -
media-gfx/librecad/ChangeLog | 6 +
media-gfx/librecad/Manifest | 4 +-
media-gfx/librecad/files/1.0.0_rc2-gcc4.6.patch | 38 ---
.../files/librecad-1.0.0_rc2-version.patch | 11 -
media-gfx/librecad/librecad-1.0.2.ebuild | 45 ---
media-gfx/librecad/librecad-2.0.0_beta5.ebuild | 48 ---
media-gfx/librecad/librecad-2.0.0_rc1.ebuild | 27 +-
media-gfx/librecad/metadata.xml | 23 +-
media-libs/OpenMOIV/metadata.xml | 3 -
media-libs/libgfx/metadata.xml | 3 -
profiles/package.mask | 6 +
sci-biology/perlprimer/metadata.xml | 3 -
sci-chemistry/GromacsWrapper/metadata.xml | 2 +-
sci-chemistry/ball/metadata.xml | 2 +-
sci-chemistry/burrow-owl/metadata.xml | 5 +-
sci-chemistry/camshift/metadata.xml | 5 +-
sci-chemistry/chemBuild/metadata.xml | 2 +-
sci-chemistry/chimera-bin/metadata.xml | 2 +-
sci-chemistry/chooch/metadata.xml | 5 +-
sci-chemistry/cnsface/metadata.xml | 5 +-
sci-chemistry/concoord/metadata.xml | 2 +-
sci-chemistry/coot/metadata.xml | 3 -
sci-chemistry/cs-rosetta/metadata.xml | 2 +-
sci-chemistry/curvefit/metadata.xml | 2 +-
sci-chemistry/direx/metadata.xml | 3 -
sci-chemistry/dssp2pdb/metadata.xml | 3 -
sci-chemistry/freeon/ChangeLog | 9 +
...ch => freeon-2012.05.03-no_internal_hdf5.patch} | 32 +-
.../files/freeon-9999-no_internal_hdf5.patch | 25 ++
.../files/freeon-9999-no_internal_libs.patch | 47 ---
sci-chemistry/freeon/freeon-2012.05.03.ebuild | 7 +-
sci-chemistry/freeon/freeon-9999.ebuild | 7 +-
sci-chemistry/hydronmr/metadata.xml | 2 +-
sci-chemistry/jana2000/metadata.xml | 3 -
sci-chemistry/jligand/metadata.xml | 5 +-
sci-chemistry/ligplot+/metadata.xml | 2 +-
sci-chemistry/mage/metadata.xml | 3 -
sci-chemistry/mddnmr/metadata.xml | 5 +-
sci-chemistry/mics/ChangeLog | 10 +
sci-chemistry/mics/Manifest | 1 +
.../{mgltools-autodocktools => mics}/metadata.xml | 0
sci-chemistry/mics/mics-1.00.2011.327.12.00.ebuild | 51 +++
sci-chemistry/modelfree/metadata.xml | 2 +-
sci-chemistry/modeller/ChangeLog | 6 +
...odeller-9.12.ebuild => modeller-9.12-r1.ebuild} | 2 +-
sci-chemistry/mtz2hkl/metadata.xml | 3 -
sci-chemistry/mtz2sca/metadata.xml | 3 -
sci-chemistry/nMOLDYN/ChangeLog | 12 +
sci-chemistry/nMOLDYN/Manifest | 1 +
sci-chemistry/{trajng => nMOLDYN}/metadata.xml | 0
sci-chemistry/nMOLDYN/nMOLDYN-3.0.10.ebuild | 24 ++
sci-chemistry/phenix-bin/metadata.xml | 2 +-
sci-chemistry/polygon/metadata.xml | 5 +-
sci-chemistry/pymol-apbs-plugin/metadata.xml | 5 +-
sci-chemistry/rosetta-tools/metadata.xml | 3 -
sci-chemistry/rosetta/metadata.xml | 23 +-
sci-chemistry/shiftx/ChangeLog | 7 +
sci-chemistry/shiftx/files/1.1-Makefile.patch | 15 +-
sci-chemistry/shiftx/files/1.1-bfr-overflow.patch | 16 +
sci-chemistry/shiftx/metadata.xml | 3 -
sci-chemistry/shiftx/shiftx-1.1.ebuild | 7 +-
sci-chemistry/shiftx2/metadata.xml | 2 +-
sci-chemistry/simpson/metadata.xml | 2 +-
sci-chemistry/smmp/metadata.xml | 5 +-
sci-chemistry/specView/metadata.xml | 2 +-
sci-chemistry/ssp/metadata.xml | 2 +-
sci-chemistry/talosn/ChangeLog | 16 +
sci-chemistry/talosn/Manifest | 1 +
.../metadata.xml | 0
.../talosn/talosn-4.01.2013.148.15.55-r2.ebuild | 68 ++++
sci-chemistry/ucsf-tools/metadata.xml | 2 +-
sci-chemistry/unio/metadata.xml | 5 +-
sci-libs/Cgraph/metadata.xml | 5 +-
sci-libs/bigdft-abi/ChangeLog | 29 ++
sci-libs/bigdft-abi/Manifest | 1 +
.../bigdft-abi-1.0.4.ebuild} | 78 +++--
.../files/bigdft-abi-1.0.4-tests.tar.bz2 | Bin 0 -> 402968 bytes
sci-libs/bigdft/metadata.xml | 19 +-
sci-libs/cnsface-scripts/metadata.xml | 3 -
sci-libs/coinor-clp/ChangeLog | 6 +
sci-libs/coinor-clp/Manifest | 2 +-
...-clp-1.15.0.ebuild => coinor-clp-1.15.1.ebuild} | 4 +-
.../files/coinor-clp-1.15.1-mpi-header.patch | 12 +
sci-libs/driftwood/metadata.xml | 5 +-
sci-libs/etsf_io/ChangeLog | 13 +-
..._io-1.0.3-r1.ebuild => etsf_io-1.0.3-r2.ebuild} | 6 +-
sci-libs/etsf_io/metadata.xml | 5 +-
sci-libs/fox/ChangeLog | 14 +-
...patch => 4.1.2-r2-install-customizations.patch} | 4 +-
.../{fox-4.1.2-r1.ebuild => fox-4.1.2-r2.ebuild} | 10 +-
sci-libs/fox/metadata.xml | 19 +-
sci-libs/libxc/ChangeLog | 11 +-
sci-libs/libxc/Manifest | 2 +-
...libxc-1.1.0-r1.ebuild => libxc-1.2.0-r1.ebuild} | 26 +-
.../{libxc-1.2.0.ebuild => libxc-2.0.1.ebuild} | 27 +-
sci-libs/libxc/libxc-9999.ebuild | 27 +-
sci-libs/libxc/metadata.xml | 5 +-
sci-libs/med/metadata.xml | 5 +-
sci-libs/msms/metadata.xml | 5 +-
sci-libs/mumps/ChangeLog | 5 +-
sci-libs/mumps/mumps-4.10.0-r2.ebuild | 5 +-
sci-libs/pagmo/metadata.xml | 13 +-
sci-libs/starparse/metadata.xml | 5 +-
sci-libs/trilinos/ChangeLog | 7 +-
sci-libs/trilinos/metadata.xml | 16 +
sci-libs/trilinos/trilinos-11.2.3.ebuild | 186 +++++++++++
sci-libs/wannier90/ChangeLog | 7 +
sci-libs/wannier90/metadata.xml | 5 +-
...annier90-1.2.ebuild => wannier90-1.2-r1.ebuild} | 0
sci-mathematics/alt-ergo/metadata.xml | 23 +-
sci-mathematics/apron/metadata.xml | 31 +-
sci-mathematics/flocq/metadata.xml | 17 +-
sci-mathematics/frama-c/metadata.xml | 28 +-
sci-mathematics/gap-guava/metadata.xml | 5 +-
sci-mathematics/gappa/metadata.xml | 22 +-
sci-mathematics/gappalib-coq/metadata.xml | 15 +-
sci-mathematics/giac/metadata.xml | 24 +-
sci-mathematics/ltl2ba/metadata.xml | 3 -
sci-mathematics/pff/metadata.xml | 17 +-
sci-mathematics/why/metadata.xml | 32 +-
sci-physics/LoopTools/metadata.xml | 2 +-
sci-physics/abinit/ChangeLog | 16 +
sci-physics/abinit/Manifest | 3 +-
sci-physics/abinit/abinit-7.0.5.ebuild | 356 ---------------------
.../{abinit-7.0.4.ebuild => abinit-7.2.2.ebuild} | 75 +++--
sci-physics/abinit/files/6.0.3-fftw.patch | 14 -
.../abinit/files/6.12.1-libabinit_options.patch | 57 ----
sci-physics/atompaw/ChangeLog | 7 +
...aw-3.0.1.9.ebuild => atompaw-3.0.1.9-r1.ebuild} | 11 +-
sci-physics/atompaw/metadata.xml | 11 +-
sci-physics/atompaw2abinit/metadata.xml | 5 +-
{sci-libs => sci-physics}/bigdft/ChangeLog | 23 +-
sci-physics/bigdft/Manifest | 1 +
.../bigdft/bigdft-1.7_pre24.ebuild | 37 +--
.../files/bigdft-1.7-dev.24-nolib_mods.patch | 14 +-
sci-physics/elk/ChangeLog | 4 +
sci-physics/elk/elk-1.4.22.ebuild | 2 +-
sci-physics/herwig++/metadata.xml | 2 +-
sci-physics/openmx/ChangeLog | 7 +
sci-physics/openmx/Manifest | 2 +
sci-physics/openmx/files/3.7-fortran_objects.patch | 15 +
sci-physics/openmx/metadata.xml | 2 +-
sci-physics/openmx/openmx-3.7.3.ebuild | 161 ++++++++++
sci-physics/thepeg/metadata.xml | 2 +-
sci-visualization/gnuplot/ChangeLog | 3 +
sci-visualization/gnuplot/gnuplot-4.7.9999.ebuild | 2 +-
sci-visualization/v_sim/metadata.xml | 3 -
www-apps/py-swish-e/metadata.xml | 5 +-
x11-libs/tr/metadata.xml | 3 -
163 files changed, 1278 insertions(+), 1264 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread* [gentoo-commits] proj/sci:vtk commit in: /
@ 2013-07-11 20:26 Justin Lecher
0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:26 UTC (permalink / raw
To: gentoo-commits
commit: f43609fc308239ce00e3b66ad121c43dbf15b1ed
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Jun 17 05:55:15 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jun 17 05:55:15 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f43609fc
Merge branch 'master' into jlec
* master: (120 commits)
add missing masks for live ebuilds
dev-python/healpy: Initial import
dev-java/jhealpix: Initial import
sci-astronomy/healpix_idl: Initial import
sci-astronomy/healpix_cxx: Initial import
sci-astronomy/chealpix: Initial import
sci-biology/twinscan: Bump to EAPI=5 and fix license
sci-biology/ssaha2-bin: Version Bump; restrict license; add QA_PREBUILT for binaries
sci-biology/smalt-bin: Version Bump; restrict license; add QA_PREBUILT for binaries
sci-biology/sequin: Version BUmp; restrcit license; add QA_PREBUILT for binaries; install html files into sys path
sci-biology/quicktree: Bump to EAPI=5 and fix license
sci-biology/gap2caf: Bump to EAPI=5 and fix license; make it build with eautoreconf
sci-biology/erpin: Bump to EAPI=5 and respect FLAGS / AR
sci-biology/clover: Version BUmp; fixed license; respect LDFLAGS
sci-chemistry/shiftx2: Respect FLAGS
Enhanced the sci-chemistry/shiftx ebuild. Still needs some love for the emake part (portage complains about LDFLAGS not respected), but should work.
sci-chemistry/pymol-plugins-psico: Bump to EAPI=5 and distutils-r1.eclass
sci-chemistry/smmp: Bump to EAPI=5 and python-r1.eclass
sci-chemistry/specView: Bump to EAPI=5 and python-single-r1.eclass
sci-chemistry/pyquante: Bump to EAPI=5 and distutils-r1.eclass
...
app-benchmarks/btl/ChangeLog | 5 +-
app-benchmarks/btl/btl-9999.ebuild | 11 +-
app-benchmarks/btl/metadata.xml | 14 +-
app-benchmarks/numbench/ChangeLog | 8 +-
app-benchmarks/numbench/metadata.xml | 14 +-
app-benchmarks/numbench/numbench-0.2.ebuild | 28 +-
app-benchmarks/numbench/numbench-9999.ebuild | 28 +-
app-doc/blacs-docs/Manifest | 2 +-
app-doc/blas-docs/Manifest | 6 +-
app-doc/lapack-docs/Manifest | 4 +-
app-doc/root-docs/Manifest | 5 -
app-text/dgs/Manifest | 2 +-
app-vim/freefem++-syntax/Manifest | 2 +-
dev-cpp/growler-arch/Manifest | 4 +-
dev-cpp/growler-core/Manifest | 2 +-
dev-cpp/growler-math/Manifest | 2 +-
dev-cpp/growler-thread/Manifest | 2 +-
dev-java/jeuclid-core/Manifest | 2 +-
dev-java/jgraphx/ChangeLog | 7 +-
dev-java/jgraphx/Manifest | 3 -
dev-java/jgraphx/jgraphx-1.2.0.7.ebuild | 44 --
dev-java/jgraphx/jgraphx-1.3.0.2.ebuild | 44 --
dev-java/jgraphx/jgraphx-1.4.1.0.ebuild | 18 +-
dev-java/jgraphx/jgraphx-1.4.1.2.ebuild | 44 --
dev-java/jgraphx/jgraphx-1.8.0.6.ebuild | 20 +-
dev-java/jgraphx/metadata.xml | 4 +-
dev-java/jhealpix/ChangeLog | 9 +
dev-java/jhealpix/Manifest | 1 +
dev-java/jhealpix/jhealpix-3.11.ebuild | 43 ++
dev-java/jhealpix/metadata.xml | 11 +
dev-java/joda-convert/Manifest | 2 +-
dev-java/vecmath/Manifest | 4 +-
dev-lang/ispc/ChangeLog | 3 +
dev-lang/ispc/ispc-9999.ebuild | 2 +-
dev-lang/julia/ChangeLog | 5 +-
dev-lang/julia/julia-9999.ebuild | 2 +-
dev-lang/julia/metadata.xml | 4 +-
dev-lang/path64/ChangeLog | 6 +-
dev-lang/path64/metadata.xml | 22 +-
dev-lang/path64/path64-9999.ebuild | 4 +-
dev-libs/asmjit/ChangeLog | 8 +-
dev-libs/asmjit/Manifest | 2 +-
...-1.0_beta_p2.ebuild => asmjit-1.0_beta4.ebuild} | 6 +-
dev-libs/asmjit/metadata.xml | 12 +-
dev-libs/libunzip/Manifest | 2 +-
dev-libs/simclist/Manifest | 5 +-
dev-ml/mlgmpidl/Manifest | 6 +-
dev-ml/ocamlgraph/Manifest | 4 -
dev-perl/BTLib/Manifest | 2 +-
dev-perl/Lab-Instrument/Manifest | 2 +-
dev-perl/Lab-Tools/Manifest | 2 +-
dev-perl/Lab-VISA/Manifest | 2 +-
dev-perl/go-db-perl/Manifest | 2 +-
dev-perl/opal-client/Manifest | 2 +-
dev-python/GOGrapher/ChangeLog | 3 +
dev-python/GOGrapher/GOGrapher-9999.ebuild | 21 +-
dev-python/astropy/ChangeLog | 8 +
dev-python/astropy/astropy-9999.ebuild | 40 +-
dev-python/astropy/metadata.xml | 10 +-
dev-python/astropysics/ChangeLog | 6 +-
dev-python/astropysics/astropysics-9999.ebuild | 55 +-
dev-python/astropysics/metadata.xml | 4 +-
dev-python/coards/ChangeLog | 8 +-
dev-python/coards/Manifest | 2 +-
dev-python/coards/coards-0.2.2.ebuild | 22 -
dev-python/coards/coards-1.0.5.ebuild | 23 +
dev-python/coards/metadata.xml | 10 +-
dev-python/coords/ChangeLog | 6 +-
dev-python/coords/Manifest | 2 +-
dev-python/coords/coords-0.37.ebuild | 22 +-
dev-python/coords/metadata.xml | 4 +-
dev-python/cosmocalc/ChangeLog | 6 +-
dev-python/cosmocalc/Manifest | 2 +-
dev-python/cosmocalc/cosmocalc-0.1.2-r1.ebuild | 23 +-
dev-python/cosmocalc/metadata.xml | 4 +-
dev-python/dimensionful/ChangeLog | 6 +-
dev-python/dimensionful/dimensionful-9999.ebuild | 37 +-
dev-python/dimensionful/metadata.xml | 8 +-
dev-python/emcee/ChangeLog | 8 +-
dev-python/emcee/Manifest | 2 +-
dev-python/emcee/emcee-1.0.1.ebuild | 35 -
dev-python/emcee/emcee-1.2.0.ebuild | 27 +
dev-python/emcee/metadata.xml | 4 +-
dev-python/ffc/ChangeLog | 8 +-
dev-python/ffc/Manifest | 2 +-
dev-python/ffc/ffc-0.9.4.ebuild | 23 -
dev-python/ffc/ffc-1.2.0.ebuild | 18 +
dev-python/ffc/metadata.xml | 4 +-
dev-python/fiat/ChangeLog | 8 +-
dev-python/fiat/Manifest | 2 +-
.../fiat/{fiat-0.9.2.ebuild => fiat-1.1.ebuild} | 14 +-
dev-python/fiat/metadata.xml | 4 +-
dev-python/go-parser/ChangeLog | 6 +-
dev-python/go-parser/Manifest | 2 +-
dev-python/go-parser/go-parser-9999.ebuild | 13 +-
dev-python/go-parser/metadata.xml | 10 +-
dev-python/healpy/ChangeLog | 9 +
dev-python/healpy/Manifest | 1 +
dev-python/healpy/healpy-1.6.2.ebuild | 34 +
dev-python/healpy/metadata.xml | 10 +
dev-python/inference/ChangeLog | 7 +-
dev-python/inference/inference-0.4.ebuild | 31 +-
dev-python/inference/metadata.xml | 4 +-
dev-python/instant/ChangeLog | 8 +-
dev-python/instant/Manifest | 2 +-
dev-python/instant/instant-0.9.8.ebuild | 23 -
dev-python/instant/instant-1.2.0.ebuild | 18 +
dev-python/instant/metadata.xml | 4 +-
dev-python/meshpy/ChangeLog | 8 +-
dev-python/meshpy/Manifest | 2 +-
...meshpy-0.91.2.ebuild => meshpy-2013.1.2.ebuild} | 29 +-
dev-python/meshpy/metadata.xml | 5 +-
dev-python/numpydoc/ChangeLog | 6 +-
dev-python/numpydoc/Manifest | 2 +-
dev-python/numpydoc/metadata.xml | 4 +-
dev-python/numpydoc/numpydoc-0.4.ebuild | 22 +-
dev-python/omniorbpy/ChangeLog | 6 +-
dev-python/omniorbpy/Manifest | 2 +-
dev-python/omniorbpy/metadata.xml | 2 +-
dev-python/omniorbpy/omniorbpy-3.4.ebuild | 90 +--
dev-python/opal-client/ChangeLog | 8 +-
dev-python/opal-client/Manifest | 2 +-
dev-python/opal-client/metadata.xml | 8 +-
dev-python/opal-client/opal-client-2.2-r1.ebuild | 55 --
dev-python/opal-client/opal-client-2.4.1.ebuild | 42 ++
dev-python/pyhdf/ChangeLog | 8 +
dev-python/pyhdf/Manifest | 2 +-
dev-python/pyhdf/metadata.xml | 16 +-
dev-python/pyhdf/pyhdf-0.8.3.ebuild | 29 +-
dev-python/pythoncgns/ChangeLog | 6 +-
dev-python/pythoncgns/Manifest | 2 +-
dev-python/pythoncgns/metadata.xml | 2 +-
dev-python/pythoncgns/pythoncgns-2009.10.30.ebuild | 10 +-
dev-python/ufl/ChangeLog | 5 +-
dev-python/ufl/Manifest | 2 +-
dev-python/ufl/metadata.xml | 4 +-
dev-python/ufl/ufl-0.5.4.ebuild | 17 +-
dev-python/viper/ChangeLog | 8 +-
dev-python/viper/Manifest | 2 +-
dev-python/viper/metadata.xml | 4 +-
dev-python/viper/viper-0.4.6.ebuild | 23 -
dev-python/viper/viper-1.0.1.ebuild | 18 +
dev-tcltk/img_rotate/ChangeLog | 6 +-
dev-tcltk/img_rotate/Manifest | 2 +-
dev-tcltk/img_rotate/img_rotate-1.1.ebuild | 14 +-
dev-tcltk/img_rotate/metadata.xml | 8 +-
dev-tcltk/togl/Manifest | 2 +-
dev-util/smartgit/Manifest | 2 +-
licenses/GRL | 15 +
licenses/HSL | 222 ++++++
licenses/Tablet | 8 +-
media-gfx/brlcad/ChangeLog | 6 +-
media-gfx/brlcad/brlcad-9999.ebuild | 2 +-
media-gfx/brlcad/metadata.xml | 26 +-
media-gfx/librecad/ChangeLog | 6 +
media-gfx/librecad/librecad-9999.ebuild | 32 +-
media-libs/OpenMOIV/Manifest | 2 +-
media-libs/avbin-bin/Manifest | 4 +-
media-libs/libgfx/Manifest | 2 +-
net-firewall/gcb/Manifest | 2 +-
net-ftp/bbftp-client/Manifest | 2 +-
net-ftp/bbftp-server/Manifest | 2 +-
net-misc/bbscp/Manifest | 2 +-
net-misc/dhcp/ChangeLog | 61 --
net-misc/dhcp/Manifest | 1 -
net-misc/dhcp/dhcp-4.2.3_p2-r1.ebuild | 245 -------
net-misc/dhcp/files/dhcp-3.0-fix-perms.patch | 15 -
net-misc/dhcp/files/dhcp-3.0.3-dhclient-dbus.patch | 84 ---
.../dhcp/files/dhcp-3.0.3-dhclient-no-down.patch | 70 --
net-misc/dhcp/files/dhcp-4.0-dhclient-ntp.patch | 216 ------
net-misc/dhcp/files/dhcp-4.2.0-PPP.patch | 150 -----
.../dhcp/files/dhcp-4.2.0-errwarn-message.patch | 31 -
.../dhcp/files/dhcp-4.2.2-bind-build-flags.patch | 14 -
net-misc/dhcp/files/dhcp-4.2.2-bind-disable.patch | 13 -
.../files/dhcp-4.2.2-bind-parallel-build.patch | 14 -
.../files/dhcp-4.2.2-dhclient-resolvconf.patch | 409 ------------
.../files/dhcp-4.2.2-dhclient-stdin-conf.patch | 113 ----
net-misc/dhcp/files/dhcp-4.2.2-gpxe-cid.patch | 132 ----
net-misc/dhcp/files/dhcp-4.2.2-improved-xid.patch | 138 ----
net-misc/dhcp/files/dhcp-4.2.2-lpf-ib.patch | 538 ---------------
net-misc/dhcp/files/dhcp-4.2.2-nogateway.patch | 46 --
net-misc/dhcp/files/dhcp-4.2.2-xen-checksum.patch | 249 -------
net-misc/dhcp/files/dhcp-4.2.3-options.patch | 391 -----------
net-misc/dhcp/files/dhcpd.conf2 | 28 -
net-misc/dhcp/files/dhcpd.init2 | 94 ---
net-misc/dhcp/files/dhcpd.init5 | 114 ----
net-misc/dhcp/files/dhcrelay.conf | 13 -
net-misc/dhcp/files/dhcrelay.init2 | 29 -
net-misc/dhcp/metadata.xml | 10 -
perl-core/encoding-warnings/Manifest | 2 +-
profiles/arch/amd64/no-multilib/package.mask | 27 -
profiles/arch/amd64/package.use.mask | 23 -
profiles/package.mask | 118 +---
sci-astronomy/astrometry/ChangeLog | 23 +-
sci-astronomy/astrometry/Manifest | 2 +-
sci-astronomy/astrometry/astrometry-0.38.ebuild | 57 --
sci-astronomy/astrometry/astrometry-0.43.ebuild | 87 +++
.../astrometry/files/0.38-array-bounds.patch | 11 -
.../astrometry/files/0.38-as-needed.patch | 694 -------------------
.../astrometry/files/0.38-missing-headers.patch | 11 -
.../astrometry/files/0.38-strict-aliasing.patch | 30 -
.../astrometry/files/0.38-system-libs.patch | 48 --
.../astrometry/files/0.43-as-needed.patch | 366 ++++++++++
...r-flags.patch => 0.43-respect-user-flags.patch} | 3 +
.../astrometry/files/0.43-system-libs.patch | 742 +++++++++++++++++++++
sci-astronomy/astrometry/metadata.xml | 7 +-
sci-astronomy/bpz/ChangeLog | 5 +-
sci-astronomy/bpz/bpz-1.99.3.ebuild | 57 +-
sci-astronomy/bpz/metadata.xml | 4 +-
sci-astronomy/chealpix/ChangeLog | 9 +
sci-astronomy/chealpix/Manifest | 1 +
sci-astronomy/chealpix/chealpix-3.11.ebuild | 30 +
sci-astronomy/chealpix/metadata.xml | 11 +
sci-astronomy/eazy/ChangeLog | 5 +-
sci-astronomy/eazy/eazy-1.00.ebuild | 16 +-
sci-astronomy/eazy/metadata.xml | 4 +-
sci-astronomy/galfit-bin/ChangeLog | 3 +
sci-astronomy/galfit-bin/galfit-bin-3.0.4.ebuild | 6 +-
sci-astronomy/healpix_cxx/ChangeLog | 9 +
sci-astronomy/healpix_cxx/Manifest | 1 +
sci-astronomy/healpix_cxx/healpix_cxx-3.11.ebuild | 54 ++
sci-astronomy/healpix_cxx/metadata.xml | 12 +
sci-astronomy/healpix_idl/ChangeLog | 9 +
sci-astronomy/healpix_idl/Manifest | 1 +
sci-astronomy/healpix_idl/healpix_idl-3.11.ebuild | 37 +
sci-astronomy/healpix_idl/metadata.xml | 12 +
sci-astronomy/psfex/ChangeLog | 5 +-
sci-astronomy/psfex/metadata.xml | 10 +-
sci-astronomy/psfex/psfex-9999.ebuild | 3 +-
sci-astronomy/scamp/ChangeLog | 5 +-
sci-astronomy/scamp/metadata.xml | 10 +-
sci-astronomy/scamp/scamp-9999.ebuild | 3 +-
sci-biology/ONTO-PERL/Manifest | 2 +-
sci-biology/YASRA/ChangeLog | 4 +
sci-biology/YASRA/Manifest | 2 +-
.../YASRA/{YASRA-2.1.ebuild => YASRA-2.32.ebuild} | 15 +-
sci-biology/align_to_scf/Manifest | 2 +-
sci-biology/amos-short/Manifest | 2 +-
sci-biology/argo-bin/Manifest | 2 +-
sci-biology/argo/Manifest | 2 +-
sci-biology/autoeditor/Manifest | 4 +-
sci-biology/bambus/Manifest | 2 +-
sci-biology/brat/Manifest | 2 +-
sci-biology/caftools/ChangeLog | 8 +
sci-biology/caftools/Manifest | 4 +-
sci-biology/caftools/caftools-2.0.2.ebuild | 36 +-
sci-biology/caftools/caftools-2.0.ebuild | 38 --
sci-biology/caftools/metadata.xml | 16 +-
sci-biology/cap3-bin/Manifest | 4 +-
sci-biology/cdbfasta/Manifest | 2 +-
sci-biology/clover/ChangeLog | 6 +-
sci-biology/clover/Manifest | 4 +-
sci-biology/clover/clover-2010.02.19.ebuild | 43 --
sci-biology/clover/clover-2011.10.24.ebuild | 40 ++
sci-biology/clover/metadata.xml | 6 +-
sci-biology/clview/Manifest | 4 +-
sci-biology/codonw/Manifest | 2 +-
sci-biology/cutadapt/ChangeLog | 6 +-
sci-biology/cutadapt/Manifest | 2 +-
.../{cutadapt-1.0.ebuild => cutadapt-1.2.1.ebuild} | 13 +-
sci-biology/cutadapt/metadata.xml | 10 +-
sci-biology/dawg/Manifest | 2 +-
sci-biology/embassy-cbstools/Manifest | 2 +-
sci-biology/embassy-domainatrix/Manifest | 2 +-
sci-biology/embassy-domalign/Manifest | 2 +-
sci-biology/embassy-domsearch/Manifest | 2 +-
sci-biology/embassy-emnu/Manifest | 2 +-
sci-biology/embassy-esim4/Manifest | 2 +-
sci-biology/embassy-hmmer/Manifest | 2 +-
sci-biology/embassy-iprscan/Manifest | 2 +-
sci-biology/embassy-mse/Manifest | 2 +-
sci-biology/embassy-phylipnew/Manifest | 2 +-
sci-biology/embassy-signature/Manifest | 2 +-
sci-biology/embassy-structure/Manifest | 2 +-
sci-biology/embassy-topo/Manifest | 2 +-
sci-biology/embassy-vienna/Manifest | 2 +-
sci-biology/erpin/ChangeLog | 5 +-
sci-biology/erpin/Manifest | 4 +-
sci-biology/erpin/erpin-5.5b.ebuild | 23 +-
sci-biology/erpin/metadata.xml | 10 +-
sci-biology/est2uni/Manifest | 10 +-
sci-biology/fastdnaml/Manifest | 4 +-
sci-biology/gap2caf/ChangeLog | 8 +
sci-biology/gap2caf/Manifest | 4 +-
sci-biology/gap2caf/gap2caf-2.1.0.ebuild | 45 +-
sci-biology/gap2caf/metadata.xml | 10 +-
sci-biology/gbench/Manifest | 2 +-
sci-biology/genepop/Manifest | 2 +-
sci-biology/generecon/Manifest | 2 +-
sci-biology/genseed/Manifest | 2 +-
sci-biology/grappa/Manifest | 2 +-
sci-biology/jalview/Manifest | 2 +-
sci-biology/lastz/ChangeLog | 12 +-
sci-biology/lastz/Manifest | 3 +-
sci-biology/lastz/files/lastz-1.03.34-build.patch | 43 ++
.../{lastz-1.02.00.ebuild => lastz-1.03.34.ebuild} | 28 +-
sci-biology/lastz/metadata.xml | 10 +-
sci-biology/lucy/Manifest | 2 +-
sci-biology/mavid/Manifest | 2 +-
sci-biology/merlin/Manifest | 2 +-
sci-biology/miranda/Manifest | 2 +-
sci-biology/mrbayes/Manifest | 2 +-
sci-biology/mreps/Manifest | 2 +-
sci-biology/mrfast/Manifest | 2 +-
sci-biology/mrsfast/Manifest | 2 +-
sci-biology/ncbi-tools++/ChangeLog | 6 +
.../ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild | 3 +-
sci-biology/nrcl/Manifest | 4 +-
sci-biology/perlprimer/Manifest | 2 +-
sci-biology/phylobayes/ChangeLog | 10 -
sci-biology/phylobayes/Manifest | 2 -
sci-biology/phylobayes/metadata.xml | 9 -
sci-biology/phylobayes/phylobayes-3.3b.ebuild | 37 -
sci-biology/proda/Manifest | 2 +-
sci-biology/psx/Manifest | 2 +-
sci-biology/pybrain/ChangeLog | 6 +-
sci-biology/pybrain/metadata.xml | 2 +-
sci-biology/pybrain/pybrain-9999.ebuild | 25 +-
sci-biology/quicktree/ChangeLog | 6 +-
sci-biology/quicktree/Manifest | 2 +-
sci-biology/quicktree/metadata.xml | 10 +-
sci-biology/quicktree/quicktree-1.1-r1.ebuild | 17 +-
sci-biology/rnaplex/Manifest | 2 +-
sci-biology/roche454ace2caf/Manifest | 2 +-
sci-biology/sclust/Manifest | 4 +-
sci-biology/sequin/ChangeLog | 9 +-
sci-biology/sequin/Manifest | 4 +-
sci-biology/sequin/sequin-20090722.ebuild | 32 -
sci-biology/sequin/sequin-20121202.ebuild | 44 ++
sci-biology/sff_dump/Manifest | 2 +-
sci-biology/signalp/Manifest | 2 +-
sci-biology/smalt-bin/ChangeLog | 8 +-
sci-biology/smalt-bin/Manifest | 2 +-
sci-biology/smalt-bin/metadata.xml | 10 +-
sci-biology/smalt-bin/smalt-bin-0.5.1.ebuild | 25 -
sci-biology/smalt-bin/smalt-bin-0.7.4.ebuild | 31 +
sci-biology/ssaha2-bin/ChangeLog | 6 +-
sci-biology/ssaha2-bin/Manifest | 9 +-
sci-biology/ssaha2-bin/metadata.xml | 10 +-
...a2-bin-2.5.3.ebuild => ssaha2-bin-2.5.5.ebuild} | 26 +-
sci-biology/swissknife/Manifest | 2 +-
sci-biology/tablet-bin/ChangeLog | 9 +-
sci-biology/tablet-bin/Manifest | 3 +-
sci-biology/tablet-bin/metadata.xml | 10 +-
.../tablet-bin/tablet-bin-1.11.11.01.ebuild | 73 --
...1.05.03.ebuild => tablet-bin-1.13.05.17.ebuild} | 57 +-
sci-biology/tclust/Manifest | 4 +-
sci-biology/tgicl/Manifest | 2 +-
sci-biology/tigr-assembler/Manifest | 2 +-
sci-biology/tigr-foundation-libs/Manifest | 2 +-
sci-biology/tmhmm/Manifest | 2 +-
sci-biology/twinscan/ChangeLog | 6 +-
sci-biology/twinscan/Manifest | 2 +-
sci-biology/twinscan/metadata.xml | 10 +-
sci-biology/twinscan/twinscan-4.1.2.ebuild | 30 +-
sci-biology/zmsort/Manifest | 4 +-
sci-chemistry/almost/Manifest | 2 +-
sci-chemistry/ball/ChangeLog | 3 +
sci-chemistry/ball/ball-9999.ebuild | 11 +-
sci-chemistry/ball/metadata.xml | 2 +-
sci-chemistry/bist/Manifest | 2 +-
sci-chemistry/chemBuild/ChangeLog | 6 +-
sci-chemistry/chemBuild/chemBuild-1.0.2.ebuild | 33 +-
sci-chemistry/chemBuild/files/chemBuild | 2 +-
sci-chemistry/chemBuild/metadata.xml | 2 +-
sci-chemistry/cnsface/ChangeLog | 6 +-
sci-chemistry/cnsface/Manifest | 2 +-
sci-chemistry/cnsface/cnsface-0.0.12.ebuild | 19 +-
sci-chemistry/cnsface/metadata.xml | 8 +-
sci-chemistry/direx/Manifest | 2 +-
sci-chemistry/drawxtl/Manifest | 4 +-
sci-chemistry/dssp2pdb/Manifest | 2 +-
sci-chemistry/hydronmr/ChangeLog | 3 +
sci-chemistry/hydronmr/hydronmr-7c.ebuild | 1 -
sci-chemistry/jana2000/Manifest | 2 +-
sci-chemistry/jmol/Manifest | 2 +-
sci-chemistry/mage/Manifest | 2 +-
sci-chemistry/modeller/ChangeLog | 6 +-
sci-chemistry/modeller/Manifest | 2 +-
sci-chemistry/modeller/metadata.xml | 2 +-
.../{modeller-9.8.ebuild => modeller-9.12.ebuild} | 96 ++-
sci-chemistry/mtz2hkl/Manifest | 2 +-
sci-chemistry/mtz2sca/Manifest | 2 +-
sci-chemistry/nmrpipe/ChangeLog | 8 +
.../nmrpipe/nmrpipe-7.9.2013.021.23.09-r2.ebuild | 4 +-
sci-chemistry/nmrview/ChangeLog | 6 +-
sci-chemistry/nmrview/metadata.xml | 10 +-
sci-chemistry/nmrview/nmrview-5.2.2-r3.ebuild | 15 +-
sci-chemistry/nwchem/ChangeLog | 4 +
sci-chemistry/nwchem/Manifest | 1 -
sci-chemistry/nwchem/nwchem-6.1.1.ebuild | 126 ----
sci-chemistry/nwchem/nwchem-6.3.ebuild | 10 +-
sci-chemistry/phaser/ChangeLog | 21 -
sci-chemistry/phaser/Manifest | 1 -
sci-chemistry/phaser/files/2.1.4-sadf.patch | 64 --
.../phaser/files/phaser-2.1.4-chmod.patch | 11 -
sci-chemistry/phaser/metadata.xml | 30 -
sci-chemistry/phaser/phaser-2.1.4-r1.ebuild | 138 ----
sci-chemistry/phaser/phaser-2.1.4.ebuild | 114 ----
sci-chemistry/polygon/ChangeLog | 7 +-
sci-chemistry/polygon/Manifest | 4 +-
.../polygon/files/{0710-db.patch => 0612-db.patch} | 20 +-
sci-chemistry/polygon/metadata.xml | 8 +-
.../{polygon-0710.ebuild => polygon-0612.ebuild} | 18 +-
sci-chemistry/pymol-apbs-plugin/ChangeLog | 9 +-
sci-chemistry/pymol-apbs-plugin/metadata.xml | 8 +-
.../pymol-apbs-plugin-9999.ebuild | 53 +-
sci-chemistry/pymol-plugins-ezviz/ChangeLog | 4 +
sci-chemistry/pymol-plugins-ezviz/Manifest | 2 +-
.../pymol-plugins-ezviz-1.0.2005.ebuild | 56 +-
sci-chemistry/pymol-plugins-psico/ChangeLog | 3 +
.../pymol-plugins-psico-9999.ebuild | 15 +-
sci-chemistry/pyquante/ChangeLog | 6 +-
sci-chemistry/pyquante/Manifest | 2 +-
sci-chemistry/pyquante/metadata.xml | 2 +-
sci-chemistry/pyquante/pyquante-1.6.3-r1.ebuild | 11 +-
sci-chemistry/rosetta-tools/Manifest | 2 +-
sci-chemistry/shiftx/ChangeLog | 5 +-
sci-chemistry/shiftx/Manifest | 2 +-
sci-chemistry/shiftx/metadata.xml | 8 +-
sci-chemistry/shiftx/shiftx-1.1.ebuild | 24 +-
sci-chemistry/shiftx2/ChangeLog | 8 +
sci-chemistry/shiftx2/Manifest | 1 +
sci-chemistry/shiftx2/files/gentoo-fixes.patch | 194 ++++++
sci-chemistry/shiftx2/metadata.xml | 39 ++
.../shiftx2/shiftx2-1.07_p20120106.ebuild | 112 ++++
sci-chemistry/smmp/ChangeLog | 5 +-
sci-chemistry/smmp/Manifest | 2 +-
sci-chemistry/smmp/metadata.xml | 8 +-
sci-chemistry/smmp/smmp-3.0.5.ebuild | 41 +-
sci-chemistry/specView/ChangeLog | 3 +
sci-chemistry/specView/specView-1.0.2.ebuild | 52 +-
sci-chemistry/ssp/ChangeLog | 5 +-
sci-chemistry/ssp/metadata.xml | 8 +-
sci-chemistry/ssp/ssp-09.11.ebuild | 6 +-
sci-chemistry/unio/Manifest | 4 +-
sci-electronics/player/Manifest | 2 +-
sci-electronics/stage/Manifest | 2 +-
sci-electronics/tnt/Manifest | 2 +-
sci-geosciences/cdat-lite/Manifest | 4 +-
sci-geosciences/congen/Manifest | 2 +-
.../harmonics-dwf-free-noncomm/Manifest | 2 +-
sci-geosciences/harmonics-dwf-free/Manifest | 4 +-
sci-geosciences/libtcd/Manifest | 4 +-
sci-geosciences/seawater/Manifest | 2 +-
sci-geosciences/swmm/Manifest | 2 +-
sci-geosciences/tappy/Manifest | 2 +-
sci-geosciences/tcd-utils/Manifest | 4 +-
sci-geosciences/xtide/Manifest | 4 +-
sci-libs/blastdb/ChangeLog | 8 +
sci-libs/blastdb/blastdb-9999.ebuild | 8 +-
sci-libs/blastdb/metadata.xml | 31 +-
sci-libs/calculix-cgx/Manifest | 4 +-
sci-libs/cgnsfoam/Manifest | 2 +-
sci-libs/cgnslib/Manifest | 2 +-
sci-libs/cnsface-scripts/Manifest | 2 +-
sci-libs/coinhsl/ChangeLog | 12 +
sci-libs/coinhsl/Manifest | 1 +
sci-libs/coinhsl/coinhsl-2012.12.21.ebuild | 36 +
sci-libs/coinhsl/metadata.xml | 12 +
sci-libs/dcmtk/Manifest | 6 +-
sci-libs/driftwood/Manifest | 2 +-
sci-libs/etsf_io/Manifest | 2 +-
sci-libs/factory/Manifest | 2 +-
sci-libs/fgsl/Manifest | 4 +-
sci-libs/fox/Manifest | 12 +-
sci-libs/fplll/Manifest | 2 +-
sci-libs/framewave/Manifest | 2 +-
sci-libs/geom/Manifest | 2 +-
sci-libs/givaro/Manifest | 4 +-
sci-libs/ipopt/ChangeLog | 9 +
sci-libs/ipopt/Manifest | 2 +-
.../{ipopt-3.10.3.ebuild => ipopt-3.11.0.ebuild} | 19 +-
sci-libs/ipopt/metadata.xml | 11 +-
sci-libs/libcgnsoo/Manifest | 2 +-
sci-libs/libfac/Manifest | 4 +-
sci-libs/libxc/Manifest | 2 +-
sci-libs/lwpr/Manifest | 2 +-
sci-libs/m4ri/Manifest | 4 +-
sci-libs/matio/Manifest | 2 +-
sci-libs/mesquite/Manifest | 2 +-
sci-libs/ni-visa/Manifest | 2 +-
sci-libs/oasa/Manifest | 2 +-
sci-libs/omalloc/Manifest | 2 +-
sci-libs/symmetrica/Manifest | 2 +-
sci-libs/trilinos/ChangeLog | 4 +
sci-libs/trilinos/Manifest | 2 +-
sci-libs/trilinos/metadata.xml | 56 +-
sci-libs/trilinos/trilinos-10.10.1.ebuild | 124 ----
sci-libs/trilinos/trilinos-11.0.3.ebuild | 12 +-
sci-mathematics/Oid/Manifest | 4 +-
sci-mathematics/acl2/Manifest | 2 +-
sci-mathematics/algae/files/unbundle.patch | 41 --
sci-mathematics/apron/Manifest | 5 +-
sci-mathematics/aribas/Manifest | 2 +-
sci-mathematics/axiom/Manifest | 2 +-
sci-mathematics/burrtools/Manifest | 4 +-
sci-mathematics/cadabra/ChangeLog | 5 +
sci-mathematics/cadabra/Manifest | 3 -
sci-mathematics/cadabra/cadabra-1.25.ebuild | 89 ---
sci-mathematics/cadabra/cadabra-1.28.ebuild | 87 ---
sci-mathematics/cadabra/cadabra-1.29.ebuild | 87 ---
sci-mathematics/cadabra/cadabra-1.31.ebuild | 14 +-
sci-mathematics/cadabra/metadata.xml | 4 +-
sci-mathematics/dolfin/Manifest | 2 +-
sci-mathematics/frama-c/Manifest | 3 -
sci-mathematics/gap-guava/Manifest | 2 +-
sci-mathematics/gap/Manifest | 4 +-
sci-mathematics/gappa/Manifest | 3 -
sci-mathematics/htk/Manifest | 4 +-
sci-mathematics/kayali/Manifest | 2 +-
sci-mathematics/libsfmt/Manifest | 2 +-
sci-mathematics/lie/Manifest | 2 +-
sci-mathematics/ltl2ba/Manifest | 25 +-
sci-mathematics/netgen/Manifest | 2 +-
sci-mathematics/open-axiom/Manifest | 2 +-
sci-mathematics/pest/Manifest | 6 +-
sci-mathematics/ufc/Manifest | 2 +-
sci-misc/finomaton/Manifest | 2 +-
sci-misc/fitscut/Manifest | 2 +-
sci-misc/jwnl/Manifest | 4 +-
sci-misc/kotus-sanalista/Manifest | 2 +-
sci-misc/nltk/Manifest | 2 +-
sci-misc/omorfi/Manifest | 2 +-
sci-misc/opennlp-maxent/Manifest | 2 +-
sci-misc/opennlp-tools/Manifest | 88 +--
sci-misc/pywordnet/Manifest | 2 +-
sci-misc/salome-kernel/Manifest | 4 +-
sci-misc/salome-pycalculator/Manifest | 4 +-
sci-misc/stanford-parser/Manifest | 2 +-
sci-misc/stanford-tagger/Manifest | 2 +-
sci-physics/espresso++/ChangeLog | 4 +
sci-physics/espresso++/espresso++-9999.ebuild | 22 +-
sci-physics/espresso++/metadata.xml | 16 +-
sci-physics/espresso/ChangeLog | 4 +
sci-physics/espresso/espresso-9999.ebuild | 24 +-
sci-physics/espresso/metadata.xml | 10 +-
sci-physics/qcl/Manifest | 8 +-
sci-visualization/gnuplot/ChangeLog | 4 +
sci-visualization/gnuplot/gnuplot-4.6.9999.ebuild | 2 +-
sci-visualization/gnuplot/gnuplot-4.7.9999.ebuild | 2 +-
sci-visualization/nodemon/Manifest | 2 +-
sys-cluster/condor/ChangeLog | 40 --
sys-cluster/condor/Manifest | 2 -
sys-cluster/condor/condor-7.5.2.ebuild | 160 -----
sys-cluster/condor/condor-7.5.4.ebuild | 160 -----
sys-cluster/condor/files/condor.confd | 2 -
sys-cluster/condor/files/condor.initd | 64 --
sys-cluster/condor/files/condor_config.local | 11 -
sys-cluster/condor/metadata.xml | 26 -
sys-cluster/ganglia_jobmonarch/Manifest | 2 +-
sys-cluster/lustre/ChangeLog | 4 +
sys-cluster/lustre/lustre-9999.ebuild | 6 +-
sys-cluster/lustre/metadata.xml | 20 +-
sys-cluster/modules/modules-3.2.9c-r1.ebuild | 2 +-
sys-cluster/mpe2/ChangeLog | 15 -
sys-cluster/mpe2/Manifest | 1 -
.../files/slog2sdk-trace_rlog-makefile-fixes.patch | 68 --
.../slog2sdk-trace_sample-makefile-fixes.patch | 68 --
sys-cluster/mpe2/metadata.xml | 10 -
sys-cluster/mpe2/mpe2-1.0.6_p1.ebuild | 148 ----
sys-cluster/nullmpi/ChangeLog | 6 +-
sys-cluster/nullmpi/Manifest | 2 +-
sys-cluster/nullmpi/metadata.xml | 10 +-
sys-cluster/nullmpi/nullmpi-0.7.ebuild | 4 +-
sys-cluster/nullmpi/nullmpi-9999.ebuild | 16 +-
sys-cluster/pyslice/Manifest | 2 +-
sys-devel/gdebugger/Manifest | 4 +-
sys-infiniband/librxe/Manifest | 2 +-
www-apps/py-swish-e/ChangeLog | 6 +-
www-apps/py-swish-e/Manifest | 2 +-
www-apps/py-swish-e/metadata.xml | 8 +-
www-apps/py-swish-e/py-swish-e-0.5.ebuild | 12 +-
x11-libs/tr/Manifest | 2 +-
x11-libs/xview-bin/ChangeLog | 3 +
x11-libs/xview-bin/xview-bin-3.2_p1428.ebuild | 2 +-
x11-misc/envytools/ChangeLog | 6 +-
x11-misc/envytools/envytools-9999.ebuild | 18 +-
x11-misc/envytools/metadata.xml | 10 +-
579 files changed, 4325 insertions(+), 8161 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread* [gentoo-commits] proj/sci:master commit in: /
@ 2013-07-08 12:08 Justin Lecher
2013-07-11 20:26 ` [gentoo-commits] proj/sci:vtk " Justin Lecher
0 siblings, 1 reply; 28+ messages in thread
From: Justin Lecher @ 2013-07-08 12:08 UTC (permalink / raw
To: gentoo-commits
commit: 871dd6c9683391d6caedb0c82efac78e8befd55c
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 30 15:31:13 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jun 30 15:31:13 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=871dd6c9
Merge branch 'master' into jlec
* master: (36 commits)
sci-libs/msms: Version BUmp; Bump to new distutil-r1.eclass
app-doc/root-docs: version bump
sci-physics/root: version bump
sys-cluster/hpl: version bump and fixes
fixed deps
In sci-libs/bigdft-abi-1.0.4-r1, CUDA support made compile.
moved to gx86
moved to gx86
Beautify
Beautify
Beautify.
Added new package: projections
Added new package: projections
Bashified package name mangling.
sys-cluster/modules: Prefix keyworded. Added tests. FHS fixes. Add bunch of fedora patches
Fixed missing use flag.
sci-chemistry/ucsf-tools: Fix compilation with latest gcc
sci-chemistry/modeller: Fix lib position, #474696
sci-chemistry/pymol: Update repo uri
sci-chemistry/pymol: Update repo uri
...
app-admin/eselect/ChangeLog | 6 +
app-admin/eselect/Manifest | 2 +-
...1.3.4-r100.ebuild => eselect-1.3.5-r100.ebuild} | 0
app-doc/root-docs/ChangeLog | 6 +
app-doc/root-docs/Manifest | 2 +-
...ocs-5.34.08.ebuild => root-docs-5.34.09.ebuild} | 2 +-
dev-java/fits/ChangeLog | 9 +-
dev-java/fits/Manifest | 2 +-
.../{fits-1.08.1.ebuild => fits-1.11.0.ebuild} | 6 +-
dev-lang/ispc/ChangeLog | 3 +
dev-lang/ispc/ispc-9999.ebuild | 3 +-
sci-chemistry/ambertools/ChangeLog | 4 +-
sci-chemistry/ambertools/ambertools-12.ebuild | 2 +-
sci-chemistry/gnome-chemistry-utils/ChangeLog | 4 +
.../gnome-chemistry-utils-0.14.2.ebuild | 2 +-
sci-chemistry/gnome-chemistry-utils/metadata.xml | 8 +-
sci-chemistry/modeller/ChangeLog | 4 +
...ller-9.12-r1.ebuild => modeller-9.12-r2.ebuild} | 3 +-
sci-chemistry/pymol/ChangeLog | 3 +
sci-chemistry/pymol/pymol-9999.ebuild | 2 +-
sci-chemistry/ucsf-tools/ChangeLog | 3 +
sci-chemistry/ucsf-tools/ucsf-tools-9999.ebuild | 13 +-
sci-libs/bigdft-abi/ChangeLog | 8 +
...abi-1.0.4.ebuild => bigdft-abi-1.0.4-r1.ebuild} | 3 +
.../files/bigdft-abi-1.0.4-CUDA_gethostname.patch | 22 +++
sci-libs/lwpr/ChangeLog | 9 +-
sci-libs/lwpr/Manifest | 2 +-
sci-libs/lwpr/files/lwpr-1.2.2-setup.py.patch | 12 --
sci-libs/lwpr/lwpr-1.2.2.ebuild | 83 ---------
sci-libs/lwpr/lwpr-1.2.5.ebuild | 51 ++++++
sci-libs/lwpr/metadata.xml | 10 +-
sci-libs/msms/ChangeLog | 10 +-
sci-libs/msms/Manifest | 3 +-
sci-libs/msms/metadata.xml | 2 +-
sci-libs/msms/msms-1.5.4-r1.ebuild | 54 ------
.../{msms-1.5.6_rc2.ebuild => msms-1.5.6.ebuild} | 19 +--
sci-physics/lammps/ChangeLog | 55 ------
sci-physics/lammps/Manifest | 3 -
sci-physics/lammps/lammps-20130512.ebuild | 72 --------
sci-physics/lammps/lammps-20130514.ebuild | 75 ---------
sci-physics/lammps/lammps-20130526.ebuild | 75 ---------
sci-physics/lammps/metadata.xml | 30 ----
sci-physics/root/ChangeLog | 6 +
sci-physics/root/Manifest | 5 +-
sci-physics/root/metadata.xml | 1 +
.../{root-5.34.08.ebuild => root-5.34.09.ebuild} | 15 +-
sys-cluster/charm/ChangeLog | 26 ---
sys-cluster/charm/Manifest | 1 -
sys-cluster/charm/charm-6.5.0.ebuild | 175 -------------------
.../charm/files/charm-6.5.0-charmc-gentoo.patch | 25 ---
sys-cluster/charm/metadata.xml | 10 --
sys-cluster/charmdebug/ChangeLog | 12 ++
sys-cluster/charmdebug/Manifest | 1 +
sys-cluster/charmdebug/charmdebug-6.2.0.ebuild | 31 ++++
.../charmdebug}/metadata.xml | 0
sys-cluster/hpl/ChangeLog | 8 +
sys-cluster/hpl/Manifest | 3 +-
.../hpl/{hpl-2.0-r1.ebuild => hpl-2.1.ebuild} | 33 ++--
sys-cluster/modules/ChangeLog | 10 ++
sys-cluster/modules/files/createmodule.py | 186 +++++++++++++++++++++
sys-cluster/modules/files/createmodule.sh | 166 ++++++++++++++++++
.../modules/files/modules-3.2.10-avail.patch | 12 ++
.../modules/files/modules-3.2.10-bindir.patch | 11 ++
.../modules/files/modules-3.2.10-clear.patch | 11 ++
...orline.patch => modules-3.2.10-errorline.patch} | 1 -
.../modules/files/modules-3.2.10-versioning.patch | 10 ++
.../modules/files/modules-3.2.9c-errorline.patch | 1 -
sys-cluster/modules/files/modules.sh.in | 7 +
sys-cluster/modules/metadata.xml | 20 ++-
sys-cluster/modules/modules-3.2.10-r1.ebuild | 61 +++++++
sys-cluster/modules/modules-3.2.10.ebuild | 6 +-
sys-cluster/projections/ChangeLog | 13 ++
sys-cluster/projections/Manifest | 1 +
.../projections}/metadata.xml | 0
sys-cluster/projections/projections-6.2.1.ebuild | 30 ++++
75 files changed, 811 insertions(+), 774 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread* [gentoo-commits] proj/sci:vtk commit in: /
2013-07-08 12:08 [gentoo-commits] proj/sci:master " Justin Lecher
@ 2013-07-11 20:26 ` Justin Lecher
0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:26 UTC (permalink / raw
To: gentoo-commits
commit: 871dd6c9683391d6caedb0c82efac78e8befd55c
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 30 15:31:13 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jun 30 15:31:13 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=871dd6c9
Merge branch 'master' into jlec
* master: (36 commits)
sci-libs/msms: Version BUmp; Bump to new distutil-r1.eclass
app-doc/root-docs: version bump
sci-physics/root: version bump
sys-cluster/hpl: version bump and fixes
fixed deps
In sci-libs/bigdft-abi-1.0.4-r1, CUDA support made compile.
moved to gx86
moved to gx86
Beautify
Beautify
Beautify.
Added new package: projections
Added new package: projections
Bashified package name mangling.
sys-cluster/modules: Prefix keyworded. Added tests. FHS fixes. Add bunch of fedora patches
Fixed missing use flag.
sci-chemistry/ucsf-tools: Fix compilation with latest gcc
sci-chemistry/modeller: Fix lib position, #474696
sci-chemistry/pymol: Update repo uri
sci-chemistry/pymol: Update repo uri
...
app-admin/eselect/ChangeLog | 6 +
app-admin/eselect/Manifest | 2 +-
...1.3.4-r100.ebuild => eselect-1.3.5-r100.ebuild} | 0
app-doc/root-docs/ChangeLog | 6 +
app-doc/root-docs/Manifest | 2 +-
...ocs-5.34.08.ebuild => root-docs-5.34.09.ebuild} | 2 +-
dev-java/fits/ChangeLog | 9 +-
dev-java/fits/Manifest | 2 +-
.../{fits-1.08.1.ebuild => fits-1.11.0.ebuild} | 6 +-
dev-lang/ispc/ChangeLog | 3 +
dev-lang/ispc/ispc-9999.ebuild | 3 +-
sci-chemistry/ambertools/ChangeLog | 4 +-
sci-chemistry/ambertools/ambertools-12.ebuild | 2 +-
sci-chemistry/gnome-chemistry-utils/ChangeLog | 4 +
.../gnome-chemistry-utils-0.14.2.ebuild | 2 +-
sci-chemistry/gnome-chemistry-utils/metadata.xml | 8 +-
sci-chemistry/modeller/ChangeLog | 4 +
...ller-9.12-r1.ebuild => modeller-9.12-r2.ebuild} | 3 +-
sci-chemistry/pymol/ChangeLog | 3 +
sci-chemistry/pymol/pymol-9999.ebuild | 2 +-
sci-chemistry/ucsf-tools/ChangeLog | 3 +
sci-chemistry/ucsf-tools/ucsf-tools-9999.ebuild | 13 +-
sci-libs/bigdft-abi/ChangeLog | 8 +
...abi-1.0.4.ebuild => bigdft-abi-1.0.4-r1.ebuild} | 3 +
.../files/bigdft-abi-1.0.4-CUDA_gethostname.patch | 22 +++
sci-libs/lwpr/ChangeLog | 9 +-
sci-libs/lwpr/Manifest | 2 +-
sci-libs/lwpr/files/lwpr-1.2.2-setup.py.patch | 12 --
sci-libs/lwpr/lwpr-1.2.2.ebuild | 83 ---------
sci-libs/lwpr/lwpr-1.2.5.ebuild | 51 ++++++
sci-libs/lwpr/metadata.xml | 10 +-
sci-libs/msms/ChangeLog | 10 +-
sci-libs/msms/Manifest | 3 +-
sci-libs/msms/metadata.xml | 2 +-
sci-libs/msms/msms-1.5.4-r1.ebuild | 54 ------
.../{msms-1.5.6_rc2.ebuild => msms-1.5.6.ebuild} | 19 +--
sci-physics/lammps/ChangeLog | 55 ------
sci-physics/lammps/Manifest | 3 -
sci-physics/lammps/lammps-20130512.ebuild | 72 --------
sci-physics/lammps/lammps-20130514.ebuild | 75 ---------
sci-physics/lammps/lammps-20130526.ebuild | 75 ---------
sci-physics/lammps/metadata.xml | 30 ----
sci-physics/root/ChangeLog | 6 +
sci-physics/root/Manifest | 5 +-
sci-physics/root/metadata.xml | 1 +
.../{root-5.34.08.ebuild => root-5.34.09.ebuild} | 15 +-
sys-cluster/charm/ChangeLog | 26 ---
sys-cluster/charm/Manifest | 1 -
sys-cluster/charm/charm-6.5.0.ebuild | 175 -------------------
.../charm/files/charm-6.5.0-charmc-gentoo.patch | 25 ---
sys-cluster/charm/metadata.xml | 10 --
sys-cluster/charmdebug/ChangeLog | 12 ++
sys-cluster/charmdebug/Manifest | 1 +
sys-cluster/charmdebug/charmdebug-6.2.0.ebuild | 31 ++++
.../charmdebug}/metadata.xml | 0
sys-cluster/hpl/ChangeLog | 8 +
sys-cluster/hpl/Manifest | 3 +-
.../hpl/{hpl-2.0-r1.ebuild => hpl-2.1.ebuild} | 33 ++--
sys-cluster/modules/ChangeLog | 10 ++
sys-cluster/modules/files/createmodule.py | 186 +++++++++++++++++++++
sys-cluster/modules/files/createmodule.sh | 166 ++++++++++++++++++
.../modules/files/modules-3.2.10-avail.patch | 12 ++
.../modules/files/modules-3.2.10-bindir.patch | 11 ++
.../modules/files/modules-3.2.10-clear.patch | 11 ++
...orline.patch => modules-3.2.10-errorline.patch} | 1 -
.../modules/files/modules-3.2.10-versioning.patch | 10 ++
.../modules/files/modules-3.2.9c-errorline.patch | 1 -
sys-cluster/modules/files/modules.sh.in | 7 +
sys-cluster/modules/metadata.xml | 20 ++-
sys-cluster/modules/modules-3.2.10-r1.ebuild | 61 +++++++
sys-cluster/modules/modules-3.2.10.ebuild | 6 +-
sys-cluster/projections/ChangeLog | 13 ++
sys-cluster/projections/Manifest | 1 +
.../projections}/metadata.xml | 0
sys-cluster/projections/projections-6.2.1.ebuild | 30 ++++
75 files changed, 811 insertions(+), 774 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:jlec commit in: /
@ 2013-07-08 11:54 Justin Lecher
2013-07-11 20:26 ` [gentoo-commits] proj/sci:vtk " Justin Lecher
0 siblings, 1 reply; 28+ messages in thread
From: Justin Lecher @ 2013-07-08 11:54 UTC (permalink / raw
To: gentoo-commits
commit: e88605269a92bfb4a232752657f59519603709da
Author: Nicolas Bock <nicolasbock <AT> gmail <DOT> com>
AuthorDate: Wed Jun 26 18:32:49 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jun 26 18:32:49 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e8860526
Merge branch 'master' of github.com:gentoo-science/sci
dev-java/fits/ChangeLog | 9 +-
dev-java/fits/Manifest | 2 +-
.../{fits-1.08.1.ebuild => fits-1.11.0.ebuild} | 6 +-
sci-libs/lwpr/ChangeLog | 9 +-
sci-libs/lwpr/Manifest | 2 +-
sci-libs/lwpr/files/lwpr-1.2.2-setup.py.patch | 12 --
sci-libs/lwpr/lwpr-1.2.2.ebuild | 83 ---------
sci-libs/lwpr/lwpr-1.2.5.ebuild | 51 ++++++
sci-libs/lwpr/metadata.xml | 10 +-
sys-cluster/modules/ChangeLog | 10 ++
sys-cluster/modules/files/createmodule.py | 186 +++++++++++++++++++++
sys-cluster/modules/files/createmodule.sh | 166 ++++++++++++++++++
.../modules/files/modules-3.2.10-avail.patch | 12 ++
.../modules/files/modules-3.2.10-bindir.patch | 11 ++
.../modules/files/modules-3.2.10-clear.patch | 11 ++
.../modules/files/modules-3.2.10-versioning.patch | 10 ++
sys-cluster/modules/files/modules.sh.in | 7 +
sys-cluster/modules/metadata.xml | 20 ++-
sys-cluster/modules/modules-3.2.10-r1.ebuild | 61 +++++++
19 files changed, 561 insertions(+), 117 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread* [gentoo-commits] proj/sci:vtk commit in: /
2013-07-08 11:54 [gentoo-commits] proj/sci:jlec " Justin Lecher
@ 2013-07-11 20:26 ` Justin Lecher
0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-07-11 20:26 UTC (permalink / raw
To: gentoo-commits
commit: e88605269a92bfb4a232752657f59519603709da
Author: Nicolas Bock <nicolasbock <AT> gmail <DOT> com>
AuthorDate: Wed Jun 26 18:32:49 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jun 26 18:32:49 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e8860526
Merge branch 'master' of github.com:gentoo-science/sci
dev-java/fits/ChangeLog | 9 +-
dev-java/fits/Manifest | 2 +-
.../{fits-1.08.1.ebuild => fits-1.11.0.ebuild} | 6 +-
sci-libs/lwpr/ChangeLog | 9 +-
sci-libs/lwpr/Manifest | 2 +-
sci-libs/lwpr/files/lwpr-1.2.2-setup.py.patch | 12 --
sci-libs/lwpr/lwpr-1.2.2.ebuild | 83 ---------
sci-libs/lwpr/lwpr-1.2.5.ebuild | 51 ++++++
sci-libs/lwpr/metadata.xml | 10 +-
sys-cluster/modules/ChangeLog | 10 ++
sys-cluster/modules/files/createmodule.py | 186 +++++++++++++++++++++
sys-cluster/modules/files/createmodule.sh | 166 ++++++++++++++++++
.../modules/files/modules-3.2.10-avail.patch | 12 ++
.../modules/files/modules-3.2.10-bindir.patch | 11 ++
.../modules/files/modules-3.2.10-clear.patch | 11 ++
.../modules/files/modules-3.2.10-versioning.patch | 10 ++
sys-cluster/modules/files/modules.sh.in | 7 +
sys-cluster/modules/metadata.xml | 20 ++-
sys-cluster/modules/modules-3.2.10-r1.ebuild | 61 +++++++
19 files changed, 561 insertions(+), 117 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:jlec commit in: /
@ 2013-07-08 11:54 Justin Lecher
2013-07-11 20:26 ` [gentoo-commits] proj/sci:vtk " Justin Lecher
0 siblings, 1 reply; 28+ messages in thread
From: Justin Lecher @ 2013-07-08 11:54 UTC (permalink / raw
To: gentoo-commits
commit: 5bdbd20181a8d1c6e88a852b8c869804ebf450d1
Author: Sébastien Fabbro <bicatali <AT> gentoo <DOT> org>
AuthorDate: Wed Jun 26 16:53:22 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jun 26 16:53:22 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5bdbd201
Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
sci-physics/lammps/ChangeLog | 3 +++
sci-physics/lammps/lammps-20130526.ebuild | 2 +-
2 files changed, 4 insertions(+), 1 deletion(-)
^ permalink raw reply [flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-07-08 11:54 Justin Lecher
2013-07-11 20:26 ` [gentoo-commits] proj/sci:vtk " Justin Lecher
0 siblings, 1 reply; 28+ messages in thread
From: Justin Lecher @ 2013-07-08 11:54 UTC (permalink / raw
To: gentoo-commits
commit: d1167d3e9fbea263a965cb527c1ec46e27318474
Author: Justin <jlec <AT> j-schmitz <DOT> net>
AuthorDate: Wed Jun 26 07:24:32 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jun 26 07:24:32 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=d1167d3e
Merge pull request #86 from gentryx/master
Added TCL patch to modules 3.2.10
...odules-3.2.9c-errorline.patch => modules-3.2.10-errorline.patch} | 1 -
sys-cluster/modules/files/modules-3.2.9c-errorline.patch | 1 -
sys-cluster/modules/modules-3.2.10.ebuild | 6 +++---
3 files changed, 3 insertions(+), 5 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:jlec commit in: /
@ 2013-06-26 7:09 Justin Lecher
2013-07-11 20:26 ` [gentoo-commits] proj/sci:vtk " Justin Lecher
0 siblings, 1 reply; 28+ messages in thread
From: Justin Lecher @ 2013-06-26 7:09 UTC (permalink / raw
To: gentoo-commits
commit: c40b625da6a65449986d4c2f7f1d90728531725c
Author: Justin <jlec <AT> j-schmitz <DOT> net>
AuthorDate: Fri Jun 21 13:50:53 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Jun 21 13:50:53 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=c40b625d
Merge pull request #85 from ercpe/jlec
Changes to the patch files to make the shiftx2 package working again.
sci-chemistry/shiftx2/ChangeLog | 8 +++-
.../files/shiftx2-1.07_p20120106-java.patch | 45 +++++++++++++++++++---
.../files/shiftx2-1.07_p20120106-system.patch | 6 +--
3 files changed, 49 insertions(+), 10 deletions(-)
^ permalink raw reply [flat|nested] 28+ messages in thread
end of thread, other threads:[~2013-07-11 20:27 UTC | newest]
Thread overview: 28+ messages (download: mbox.gz follow: Atom feed
-- links below jump to the message on this page --
2013-07-11 20:26 [gentoo-commits] proj/sci:vtk commit in: / Justin Lecher
2013-06-26 14:55 ` [gentoo-commits] proj/sci:master " Justin Lecher
2013-07-08 11:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-07-08 11:54 ` [gentoo-commits] proj/sci:jlec " Justin Lecher
-- strict thread matches above, loose matches on Subject: below --
2013-07-11 20:27 [gentoo-commits] proj/sci:vtk " Justin Lecher
2013-07-11 20:27 Justin Lecher
2013-07-11 20:27 Justin Lecher
2013-07-11 20:27 Justin Lecher
2013-07-11 20:27 Justin Lecher
2013-07-11 20:27 Justin Lecher
2013-07-11 20:27 Justin Lecher
2013-07-11 20:27 Justin Lecher
2013-07-11 20:27 Justin Lecher
2013-07-11 20:27 Justin Lecher
2013-07-11 20:27 Justin Lecher
2013-07-11 20:27 Justin Lecher
2013-07-11 20:27 Justin Lecher
2013-07-11 20:26 Justin Lecher
2013-07-11 20:26 Justin Lecher
2013-07-11 20:26 Justin Lecher
2013-07-11 20:26 Justin Lecher
2013-07-11 20:26 Justin Lecher
2013-07-11 20:26 Justin Lecher
2013-07-08 12:08 [gentoo-commits] proj/sci:master " Justin Lecher
2013-07-11 20:26 ` [gentoo-commits] proj/sci:vtk " Justin Lecher
2013-07-08 11:54 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-07-11 20:26 ` [gentoo-commits] proj/sci:vtk " Justin Lecher
2013-07-08 11:54 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-07-11 20:26 ` [gentoo-commits] proj/sci:vtk " Justin Lecher
2013-07-08 11:54 [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-07-11 20:26 ` [gentoo-commits] proj/sci:vtk " Justin Lecher
2013-06-26 7:09 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-07-11 20:26 ` [gentoo-commits] proj/sci:vtk " Justin Lecher
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox