From: "Justin Lecher" <jlec@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:ccp4 commit in: /
Date: Wed, 19 Jun 2013 06:53:40 +0000 (UTC) [thread overview]
Message-ID: <1371624811.7deb8b2f53280b43e75b7bbe369a64ce85eac123.jlec@gentoo> (raw)
commit: 7deb8b2f53280b43e75b7bbe369a64ce85eac123
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Jun 19 06:53:31 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jun 19 06:53:31 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7deb8b2f
Merge branch 'master' into ccp4
* master:
fixed qt4 build
fixing manifests
big fixes of metadata and package sub-herd re-distribution
sci-physics/openmx upgraded to 3.7.3 with some openMP and MPI C/F90 juggling, previous sci-physics/openmx-3.6 preserved for the time being.
sci-chemistry/talosn: drop upstream path in favour of our
sci-chemistry/modeller: Fix broken symlink, #473680
Abinit & friends upgraded to sci-physics/abinit-7.2.2. BigDFT moved from sci-libs to sci-physics, sci-physics/abinit uses sci-libs/bigdft-abi instead. Usage of LIBDIR/finclude abandoned in favour of /usr/include, as mostly used upstream. Old files cleaned up.
Version of bigdft bumped to 1.7_pre24, moved from sci-libs to sci-physics. No longer used as a library by sci-physics/abinit. Usage of LIBDIR/finclude abandoned in favour of /usr/include, as used upstream.
app-text/dgs/metadata.xml | 3 -
app-vim/freefem++-syntax/metadata.xml | 7 +-
app-vim/vim-gromacs/metadata.xml | 5 +-
dev-db/cppdb/metadata.xml | 19 +--
dev-libs/simclist/metadata.xml | 17 +--
dev-ml/mlgmpidl/metadata.xml | 23 ++-
dev-ml/ocamlgraph/metadata.xml | 47 +++---
dev-ml/zarith/metadata.xml | 20 +--
dev-perl/opal-client/metadata.xml | 3 -
dev-python/opal-client/metadata.xml | 5 +-
dev-tcltk/img_rotate/metadata.xml | 5 +-
dev-tcltk/togl/metadata.xml | 3 -
media-libs/OpenMOIV/metadata.xml | 3 -
media-libs/libgfx/metadata.xml | 3 -
profiles/package.mask | 6 +
sci-biology/perlprimer/metadata.xml | 3 -
sci-chemistry/GromacsWrapper/metadata.xml | 2 +-
sci-chemistry/ball/metadata.xml | 2 +-
sci-chemistry/burrow-owl/metadata.xml | 5 +-
sci-chemistry/camshift/metadata.xml | 5 +-
sci-chemistry/chemBuild/metadata.xml | 2 +-
sci-chemistry/chimera-bin/metadata.xml | 2 +-
sci-chemistry/chooch/metadata.xml | 5 +-
sci-chemistry/cnsface/metadata.xml | 5 +-
sci-chemistry/concoord/metadata.xml | 2 +-
sci-chemistry/coot/metadata.xml | 3 -
sci-chemistry/cs-rosetta/metadata.xml | 2 +-
sci-chemistry/curvefit/metadata.xml | 2 +-
sci-chemistry/direx/metadata.xml | 3 -
sci-chemistry/dssp2pdb/metadata.xml | 3 -
sci-chemistry/freeon/freeon-2012.05.03.ebuild | 7 +-
sci-chemistry/freeon/freeon-9999.ebuild | 7 +-
sci-chemistry/hydronmr/metadata.xml | 2 +-
sci-chemistry/jana2000/metadata.xml | 3 -
sci-chemistry/jligand/metadata.xml | 5 +-
sci-chemistry/ligplot+/metadata.xml | 2 +-
sci-chemistry/mage/metadata.xml | 3 -
sci-chemistry/mddnmr/metadata.xml | 5 +-
sci-chemistry/modelfree/metadata.xml | 2 +-
sci-chemistry/modeller/ChangeLog | 6 +
...odeller-9.12.ebuild => modeller-9.12-r1.ebuild} | 2 +-
sci-chemistry/mtz2hkl/metadata.xml | 3 -
sci-chemistry/mtz2sca/metadata.xml | 3 -
sci-chemistry/phenix-bin/metadata.xml | 2 +-
sci-chemistry/polygon/metadata.xml | 5 +-
sci-chemistry/pymol-apbs-plugin/metadata.xml | 5 +-
sci-chemistry/rosetta-tools/metadata.xml | 3 -
sci-chemistry/rosetta/metadata.xml | 23 ++-
sci-chemistry/shiftx/metadata.xml | 5 +-
sci-chemistry/shiftx2/metadata.xml | 2 +-
sci-chemistry/simpson/metadata.xml | 2 +-
sci-chemistry/smmp/metadata.xml | 5 +-
sci-chemistry/specView/metadata.xml | 2 +-
sci-chemistry/ssp/metadata.xml | 2 +-
sci-chemistry/talosn/ChangeLog | 6 +
...ebuild => talosn-4.01.2013.148.15.55-r2.ebuild} | 13 +-
sci-chemistry/ucsf-tools/metadata.xml | 2 +-
sci-chemistry/unio/metadata.xml | 5 +-
sci-libs/Cgraph/metadata.xml | 5 +-
sci-libs/bigdft-abi/ChangeLog | 4 +
sci-libs/bigdft-abi/Manifest | 2 -
sci-libs/bigdft-abi/bigdft-abi-1.0.4.ebuild | 5 +-
sci-libs/bigdft/metadata.xml | 19 +--
sci-libs/cnsface-scripts/metadata.xml | 3 -
sci-libs/driftwood/metadata.xml | 5 +-
sci-libs/etsf_io/metadata.xml | 5 +-
sci-libs/fox/metadata.xml | 19 +--
sci-libs/libxc/Manifest | 2 +-
sci-libs/libxc/libxc-9999.ebuild | 27 ++--
sci-libs/libxc/metadata.xml | 5 +-
sci-libs/med/metadata.xml | 5 +-
sci-libs/msms/metadata.xml | 5 +-
sci-libs/pagmo/metadata.xml | 13 +-
sci-libs/starparse/metadata.xml | 5 +-
sci-libs/wannier90/metadata.xml | 5 +-
sci-mathematics/alt-ergo/metadata.xml | 23 +--
sci-mathematics/apron/metadata.xml | 31 ++--
sci-mathematics/flocq/metadata.xml | 17 +--
sci-mathematics/frama-c/metadata.xml | 28 ++--
sci-mathematics/gap-guava/metadata.xml | 5 +-
sci-mathematics/gappa/metadata.xml | 22 +--
sci-mathematics/gappalib-coq/metadata.xml | 15 +-
sci-mathematics/giac/metadata.xml | 24 +--
sci-mathematics/ltl2ba/metadata.xml | 3 -
sci-mathematics/pff/metadata.xml | 17 +--
sci-mathematics/why/metadata.xml | 32 ++--
sci-physics/LoopTools/metadata.xml | 2 +-
sci-physics/abinit/ChangeLog | 3 +
sci-physics/abinit/Manifest | 3 +-
sci-physics/abinit/abinit-7.2.2.ebuild | 2 +-
sci-physics/atompaw/metadata.xml | 11 +-
sci-physics/atompaw2abinit/metadata.xml | 5 +-
sci-physics/bigdft/ChangeLog | 5 +
sci-physics/bigdft/Manifest | 1 +
sci-physics/bigdft/bigdft-1.7_pre24.ebuild | 2 +-
sci-physics/elk/ChangeLog | 4 +
sci-physics/elk/elk-1.4.22.ebuild | 2 +-
sci-physics/herwig++/metadata.xml | 2 +-
sci-physics/openmx/ChangeLog | 7 +
sci-physics/openmx/Manifest | 2 +
sci-physics/openmx/files/3.7-fortran_objects.patch | 15 ++
sci-physics/openmx/metadata.xml | 2 +-
sci-physics/openmx/openmx-3.7.3.ebuild | 161 +++++++++++++++++++++
sci-physics/thepeg/metadata.xml | 2 +-
sci-visualization/gnuplot/ChangeLog | 3 +
sci-visualization/gnuplot/gnuplot-4.7.9999.ebuild | 2 +-
sci-visualization/v_sim/metadata.xml | 3 -
www-apps/py-swish-e/metadata.xml | 5 +-
x11-libs/tr/metadata.xml | 3 -
109 files changed, 482 insertions(+), 463 deletions(-)
next reply other threads:[~2013-06-19 6:53 UTC|newest]
Thread overview: 70+ messages / expand[flat|nested] mbox.gz Atom feed top
2013-06-19 6:53 Justin Lecher [this message]
-- strict thread matches above, loose matches on Subject: below --
2013-07-11 20:26 [gentoo-commits] proj/sci:vtk commit in: / Justin Lecher
2013-07-08 11:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-07-11 20:26 [gentoo-commits] proj/sci:vtk " Justin Lecher
2013-07-08 11:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-07-08 11:54 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-07-08 11:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-07-08 11:54 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-07-08 11:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-07-08 11:54 Justin Lecher
2013-07-08 11:54 Justin Lecher
2013-06-26 7:09 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-19 6:53 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-19 6:53 Justin Lecher
2013-06-18 9:13 Justin Lecher
2013-06-18 9:13 Justin Lecher
2013-06-18 9:11 Justin Lecher
2013-06-18 8:57 Justin Lecher
2013-06-18 8:54 [gentoo-commits] proj/sci:fixing " Justin Lecher
2013-06-18 8:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-19 6:53 ` Justin Lecher
2013-06-18 8:54 Justin Lecher
2013-06-17 5:55 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-13 7:08 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17 5:55 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-13 7:08 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17 5:55 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-13 7:08 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17 5:55 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-13 7:08 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17 5:55 [gentoo-commits] proj/sci:fixing " Justin Lecher
2013-06-17 5:55 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17 5:55 [gentoo-commits] proj/sci:fixing " Justin Lecher
2013-06-17 5:55 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17 5:55 Justin Lecher
2013-06-17 5:55 Justin Lecher
2013-06-17 5:55 Justin Lecher
2013-06-16 17:23 [gentoo-commits] proj/sci:master " Justin Lecher
2013-06-17 5:55 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-16 15:53 Justin Lecher
2013-06-16 14:23 [gentoo-commits] proj/sci:fixing " Justin Lecher
2013-06-16 14:23 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-16 14:23 Justin Lecher
2013-06-14 11:21 Justin Lecher
2013-06-13 7:08 Justin Lecher
2013-06-13 7:08 Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-04 11:59 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-04 11:59 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-01 17:24 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-01 17:24 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-10 12:01 Justin Lecher
2013-06-10 12:01 Justin Lecher
2013-06-10 11:57 [gentoo-commits] proj/sci:master " Justin Lecher
2013-06-10 12:01 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-04 11:59 Justin Lecher
2013-06-04 11:59 Justin Lecher
2013-06-01 17:24 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-15 6:19 [gentoo-commits] proj/sci:master " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-05-15 6:19 [gentoo-commits] proj/sci:master " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-05-06 8:26 [gentoo-commits] proj/sci:master " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2012-12-12 9:23 Justin Lecher
2012-12-12 9:23 Justin Lecher
2012-12-10 14:47 [gentoo-commits] proj/sci:master " Justin Lecher
2012-12-12 9:23 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
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