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From: "Justin Lecher" <jlec@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:ccp4 commit in: /
Date: Wed, 19 Jun 2013 06:53:40 +0000 (UTC)	[thread overview]
Message-ID: <1371624811.7deb8b2f53280b43e75b7bbe369a64ce85eac123.jlec@gentoo> (raw)

commit:     7deb8b2f53280b43e75b7bbe369a64ce85eac123
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Jun 19 06:53:31 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jun 19 06:53:31 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7deb8b2f

Merge branch 'master' into ccp4

* master:
  fixed qt4 build
  fixing manifests
  big fixes of metadata and package sub-herd re-distribution
  sci-physics/openmx upgraded to 3.7.3 with some openMP and MPI C/F90 juggling, previous sci-physics/openmx-3.6 preserved for the time being.
  sci-chemistry/talosn: drop upstream path in favour of our
  sci-chemistry/modeller: Fix broken symlink, #473680
  Abinit & friends upgraded to sci-physics/abinit-7.2.2. BigDFT moved from sci-libs to sci-physics, sci-physics/abinit uses sci-libs/bigdft-abi instead. Usage of LIBDIR/finclude abandoned in favour of /usr/include, as mostly used upstream. Old files cleaned up.
  Version of bigdft bumped to 1.7_pre24, moved from sci-libs to sci-physics. No longer used as a library by sci-physics/abinit. Usage of LIBDIR/finclude abandoned in favour of /usr/include, as used upstream.


 app-text/dgs/metadata.xml                          |   3 -
 app-vim/freefem++-syntax/metadata.xml              |   7 +-
 app-vim/vim-gromacs/metadata.xml                   |   5 +-
 dev-db/cppdb/metadata.xml                          |  19 +--
 dev-libs/simclist/metadata.xml                     |  17 +--
 dev-ml/mlgmpidl/metadata.xml                       |  23 ++-
 dev-ml/ocamlgraph/metadata.xml                     |  47 +++---
 dev-ml/zarith/metadata.xml                         |  20 +--
 dev-perl/opal-client/metadata.xml                  |   3 -
 dev-python/opal-client/metadata.xml                |   5 +-
 dev-tcltk/img_rotate/metadata.xml                  |   5 +-
 dev-tcltk/togl/metadata.xml                        |   3 -
 media-libs/OpenMOIV/metadata.xml                   |   3 -
 media-libs/libgfx/metadata.xml                     |   3 -
 profiles/package.mask                              |   6 +
 sci-biology/perlprimer/metadata.xml                |   3 -
 sci-chemistry/GromacsWrapper/metadata.xml          |   2 +-
 sci-chemistry/ball/metadata.xml                    |   2 +-
 sci-chemistry/burrow-owl/metadata.xml              |   5 +-
 sci-chemistry/camshift/metadata.xml                |   5 +-
 sci-chemistry/chemBuild/metadata.xml               |   2 +-
 sci-chemistry/chimera-bin/metadata.xml             |   2 +-
 sci-chemistry/chooch/metadata.xml                  |   5 +-
 sci-chemistry/cnsface/metadata.xml                 |   5 +-
 sci-chemistry/concoord/metadata.xml                |   2 +-
 sci-chemistry/coot/metadata.xml                    |   3 -
 sci-chemistry/cs-rosetta/metadata.xml              |   2 +-
 sci-chemistry/curvefit/metadata.xml                |   2 +-
 sci-chemistry/direx/metadata.xml                   |   3 -
 sci-chemistry/dssp2pdb/metadata.xml                |   3 -
 sci-chemistry/freeon/freeon-2012.05.03.ebuild      |   7 +-
 sci-chemistry/freeon/freeon-9999.ebuild            |   7 +-
 sci-chemistry/hydronmr/metadata.xml                |   2 +-
 sci-chemistry/jana2000/metadata.xml                |   3 -
 sci-chemistry/jligand/metadata.xml                 |   5 +-
 sci-chemistry/ligplot+/metadata.xml                |   2 +-
 sci-chemistry/mage/metadata.xml                    |   3 -
 sci-chemistry/mddnmr/metadata.xml                  |   5 +-
 sci-chemistry/modelfree/metadata.xml               |   2 +-
 sci-chemistry/modeller/ChangeLog                   |   6 +
 ...odeller-9.12.ebuild => modeller-9.12-r1.ebuild} |   2 +-
 sci-chemistry/mtz2hkl/metadata.xml                 |   3 -
 sci-chemistry/mtz2sca/metadata.xml                 |   3 -
 sci-chemistry/phenix-bin/metadata.xml              |   2 +-
 sci-chemistry/polygon/metadata.xml                 |   5 +-
 sci-chemistry/pymol-apbs-plugin/metadata.xml       |   5 +-
 sci-chemistry/rosetta-tools/metadata.xml           |   3 -
 sci-chemistry/rosetta/metadata.xml                 |  23 ++-
 sci-chemistry/shiftx/metadata.xml                  |   5 +-
 sci-chemistry/shiftx2/metadata.xml                 |   2 +-
 sci-chemistry/simpson/metadata.xml                 |   2 +-
 sci-chemistry/smmp/metadata.xml                    |   5 +-
 sci-chemistry/specView/metadata.xml                |   2 +-
 sci-chemistry/ssp/metadata.xml                     |   2 +-
 sci-chemistry/talosn/ChangeLog                     |   6 +
 ...ebuild => talosn-4.01.2013.148.15.55-r2.ebuild} |  13 +-
 sci-chemistry/ucsf-tools/metadata.xml              |   2 +-
 sci-chemistry/unio/metadata.xml                    |   5 +-
 sci-libs/Cgraph/metadata.xml                       |   5 +-
 sci-libs/bigdft-abi/ChangeLog                      |   4 +
 sci-libs/bigdft-abi/Manifest                       |   2 -
 sci-libs/bigdft-abi/bigdft-abi-1.0.4.ebuild        |   5 +-
 sci-libs/bigdft/metadata.xml                       |  19 +--
 sci-libs/cnsface-scripts/metadata.xml              |   3 -
 sci-libs/driftwood/metadata.xml                    |   5 +-
 sci-libs/etsf_io/metadata.xml                      |   5 +-
 sci-libs/fox/metadata.xml                          |  19 +--
 sci-libs/libxc/Manifest                            |   2 +-
 sci-libs/libxc/libxc-9999.ebuild                   |  27 ++--
 sci-libs/libxc/metadata.xml                        |   5 +-
 sci-libs/med/metadata.xml                          |   5 +-
 sci-libs/msms/metadata.xml                         |   5 +-
 sci-libs/pagmo/metadata.xml                        |  13 +-
 sci-libs/starparse/metadata.xml                    |   5 +-
 sci-libs/wannier90/metadata.xml                    |   5 +-
 sci-mathematics/alt-ergo/metadata.xml              |  23 +--
 sci-mathematics/apron/metadata.xml                 |  31 ++--
 sci-mathematics/flocq/metadata.xml                 |  17 +--
 sci-mathematics/frama-c/metadata.xml               |  28 ++--
 sci-mathematics/gap-guava/metadata.xml             |   5 +-
 sci-mathematics/gappa/metadata.xml                 |  22 +--
 sci-mathematics/gappalib-coq/metadata.xml          |  15 +-
 sci-mathematics/giac/metadata.xml                  |  24 +--
 sci-mathematics/ltl2ba/metadata.xml                |   3 -
 sci-mathematics/pff/metadata.xml                   |  17 +--
 sci-mathematics/why/metadata.xml                   |  32 ++--
 sci-physics/LoopTools/metadata.xml                 |   2 +-
 sci-physics/abinit/ChangeLog                       |   3 +
 sci-physics/abinit/Manifest                        |   3 +-
 sci-physics/abinit/abinit-7.2.2.ebuild             |   2 +-
 sci-physics/atompaw/metadata.xml                   |  11 +-
 sci-physics/atompaw2abinit/metadata.xml            |   5 +-
 sci-physics/bigdft/ChangeLog                       |   5 +
 sci-physics/bigdft/Manifest                        |   1 +
 sci-physics/bigdft/bigdft-1.7_pre24.ebuild         |   2 +-
 sci-physics/elk/ChangeLog                          |   4 +
 sci-physics/elk/elk-1.4.22.ebuild                  |   2 +-
 sci-physics/herwig++/metadata.xml                  |   2 +-
 sci-physics/openmx/ChangeLog                       |   7 +
 sci-physics/openmx/Manifest                        |   2 +
 sci-physics/openmx/files/3.7-fortran_objects.patch |  15 ++
 sci-physics/openmx/metadata.xml                    |   2 +-
 sci-physics/openmx/openmx-3.7.3.ebuild             | 161 +++++++++++++++++++++
 sci-physics/thepeg/metadata.xml                    |   2 +-
 sci-visualization/gnuplot/ChangeLog                |   3 +
 sci-visualization/gnuplot/gnuplot-4.7.9999.ebuild  |   2 +-
 sci-visualization/v_sim/metadata.xml               |   3 -
 www-apps/py-swish-e/metadata.xml                   |   5 +-
 x11-libs/tr/metadata.xml                           |   3 -
 109 files changed, 482 insertions(+), 463 deletions(-)


             reply	other threads:[~2013-06-19  6:53 UTC|newest]

Thread overview: 70+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2013-06-19  6:53 Justin Lecher [this message]
  -- strict thread matches above, loose matches on Subject: below --
2013-07-11 20:26 [gentoo-commits] proj/sci:vtk commit in: / Justin Lecher
2013-07-08 11:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-07-11 20:26 [gentoo-commits] proj/sci:vtk " Justin Lecher
2013-07-08 11:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-07-08 11:54 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-07-08 11:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-07-08 11:54 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-07-08 11:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-07-08 11:54 Justin Lecher
2013-07-08 11:54 Justin Lecher
2013-06-26  7:09 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-19  6:53 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-19  6:53 Justin Lecher
2013-06-18  9:13 Justin Lecher
2013-06-18  9:13 Justin Lecher
2013-06-18  9:11 Justin Lecher
2013-06-18  8:57 Justin Lecher
2013-06-18  8:54 [gentoo-commits] proj/sci:fixing " Justin Lecher
2013-06-18  8:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-19  6:53 ` Justin Lecher
2013-06-18  8:54 Justin Lecher
2013-06-17  5:55 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-13  7:08 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17  5:55 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-13  7:08 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17  5:55 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-13  7:08 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17  5:55 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-13  7:08 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17  5:55 [gentoo-commits] proj/sci:fixing " Justin Lecher
2013-06-17  5:55 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17  5:55 [gentoo-commits] proj/sci:fixing " Justin Lecher
2013-06-17  5:55 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17  5:55 Justin Lecher
2013-06-17  5:55 Justin Lecher
2013-06-17  5:55 Justin Lecher
2013-06-16 17:23 [gentoo-commits] proj/sci:master " Justin Lecher
2013-06-17  5:55 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-16 15:53 Justin Lecher
2013-06-16 14:23 [gentoo-commits] proj/sci:fixing " Justin Lecher
2013-06-16 14:23 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-16 14:23 Justin Lecher
2013-06-14 11:21 Justin Lecher
2013-06-13  7:08 Justin Lecher
2013-06-13  7:08 Justin Lecher
2013-06-12  8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-04 11:59 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12  8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-04 11:59 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12  8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-01 17:24 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12  8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-01 17:24 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12  8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12  8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12  8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12  8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12  8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-10 12:01 Justin Lecher
2013-06-10 12:01 Justin Lecher
2013-06-10 11:57 [gentoo-commits] proj/sci:master " Justin Lecher
2013-06-10 12:01 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-04 11:59 Justin Lecher
2013-06-04 11:59 Justin Lecher
2013-06-01 17:24 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-15  6:19 [gentoo-commits] proj/sci:master " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-05-15  6:19 [gentoo-commits] proj/sci:master " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-05-06  8:26 [gentoo-commits] proj/sci:master " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2012-12-12  9:23 Justin Lecher
2012-12-12  9:23 Justin Lecher
2012-12-10 14:47 [gentoo-commits] proj/sci:master " Justin Lecher
2012-12-12  9:23 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher

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