From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 7298D1381F3 for ; Tue, 18 Jun 2013 13:36:41 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id F3CA4E086F; Tue, 18 Jun 2013 13:36:40 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 89C5CE086F for ; Tue, 18 Jun 2013 13:36:40 +0000 (UTC) Received: from hornbill.gentoo.org (hornbill.gentoo.org [94.100.119.163]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id A059733E5B3 for ; Tue, 18 Jun 2013 13:36:39 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by hornbill.gentoo.org (Postfix) with ESMTP id 47765E468F for ; Tue, 18 Jun 2013 13:36:38 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1371562589.9d212698b5fd45e8eb6af316de16c741c8a73de5.jlec@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-chemistry/talosn/ X-VCS-Repository: proj/sci X-VCS-Files: sci-chemistry/talosn/ChangeLog sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r2.ebuild sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild X-VCS-Directories: sci-chemistry/talosn/ X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: 9d212698b5fd45e8eb6af316de16c741c8a73de5 X-VCS-Branch: master Date: Tue, 18 Jun 2013 13:36:38 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: f476a22b-ae90-49d2-84d0-597df48f98f8 X-Archives-Hash: 3db091a50b0fb5f2757cbdfa7fa08f08 commit: 9d212698b5fd45e8eb6af316de16c741c8a73de5 Author: Justin Lecher gentoo org> AuthorDate: Tue Jun 18 13:36:29 2013 +0000 Commit: Justin Lecher gentoo org> CommitDate: Tue Jun 18 13:36:29 2013 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=9d212698 sci-chemistry/talosn: drop upstream path in favour of our Package-Manager: portage-2.2.0_alpha180 --- sci-chemistry/talosn/ChangeLog | 6 ++++++ ...48.15.55.ebuild => talosn-4.01.2013.148.15.55-r2.ebuild} | 13 +++++++++++-- 2 files changed, 17 insertions(+), 2 deletions(-) diff --git a/sci-chemistry/talosn/ChangeLog b/sci-chemistry/talosn/ChangeLog index dea3c84..9d358bf 100644 --- a/sci-chemistry/talosn/ChangeLog +++ b/sci-chemistry/talosn/ChangeLog @@ -2,6 +2,12 @@ # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*talosn-4.01.2013.148.15.55-r2 (18 Jun 2013) + + 18 Jun 2013; Justin Lecher + -talosn-4.01.2013.148.15.55.ebuild, +talosn-4.01.2013.148.15.55-r2.ebuild: + drop upstream path in favour of our + *talosn-4.01.2013.148.15.55 (18 Jun 2013) 18 Jun 2013; Justin Lecher diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r2.ebuild similarity index 80% rename from sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild rename to sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r2.ebuild index ac569c3..648c342 100644 --- a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild +++ b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r2.ebuild @@ -15,8 +15,10 @@ LICENSE="all-rights-reserved" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" IUSE="examples" -RDEPEND=">=virtual/jre-1.5" -DEPEND="${RDEPEND}" +DEPEND=">=virtual/jre-1.5" +RDEPEND="${DEPEND} + app-shells/tcsh + sci-biology/ncbi-tools" S="${WORKDIR}" @@ -26,6 +28,12 @@ src_prepare() { local s64 use amd64 || s64="_x64" rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die + + sed \ + -e '/setenv TALOSN_DIR/d' \ + -e "/set BLAST/s:=.*:= \"${EPREFIX}/usr/bin/blastpgp\":g" \ + -e '/set NR_DBNAME/s:=.*:= ${BLASTDB}:g' \ + -i talosn_ss || die } src_install() { @@ -54,6 +62,7 @@ src_install() { cat >> "${T}"/40talosn <<- EOF TALOSN_DIR="${EPREFIX}/${TALOSN}" + #BLASTDB= EOF doenvd "${T}"/40talosn }