[gentoo-commits] proj/sci:master commit in: sci-chemistry/talosn/

["Justin Lecher" <jlec@gentoo.org>]

commit:     9d212698b5fd45e8eb6af316de16c741c8a73de5
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 18 13:36:29 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 18 13:36:29 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=9d212698

sci-chemistry/talosn: drop upstream path in favour of our

Package-Manager: portage-2.2.0_alpha180

---
 sci-chemistry/talosn/ChangeLog                              |  6 ++++++
 ...48.15.55.ebuild => talosn-4.01.2013.148.15.55-r2.ebuild} | 13 +++++++++++--
 2 files changed, 17 insertions(+), 2 deletions(-)

diff --git a/sci-chemistry/talosn/ChangeLog b/sci-chemistry/talosn/ChangeLog
index dea3c84..9d358bf 100644
--- a/sci-chemistry/talosn/ChangeLog
+++ b/sci-chemistry/talosn/ChangeLog
@@ -2,6 +2,12 @@
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*talosn-4.01.2013.148.15.55-r2 (18 Jun 2013)
+
+  18 Jun 2013; Justin Lecher <jlec@gentoo.org>
+  -talosn-4.01.2013.148.15.55.ebuild, +talosn-4.01.2013.148.15.55-r2.ebuild:
+  drop upstream path in favour of our
+
 *talosn-4.01.2013.148.15.55 (18 Jun 2013)
 
   18 Jun 2013; Justin Lecher <jlec@gentoo.org>

diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r2.ebuild
similarity index 80%
rename from sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
rename to sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r2.ebuild
index ac569c3..648c342 100644
--- a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
+++ b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r2.ebuild
@@ -15,8 +15,10 @@ LICENSE="all-rights-reserved"
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 IUSE="examples"
 
-RDEPEND=">=virtual/jre-1.5"
-DEPEND="${RDEPEND}"
+DEPEND=">=virtual/jre-1.5"
+RDEPEND="${DEPEND}
+	app-shells/tcsh
+	sci-biology/ncbi-tools"
 
 S="${WORKDIR}"
 
@@ -26,6 +28,12 @@ src_prepare() {
 	local s64
 	use amd64 || s64="_x64"
 	rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die
+
+	sed \
+		-e '/setenv TALOSN_DIR/d' \
+		-e "/set BLAST/s:=.*:= \"${EPREFIX}/usr/bin/blastpgp\":g" \
+		-e '/set NR_DBNAME/s:=.*:= ${BLASTDB}:g' \
+		-i talosn_ss || die
 }
 
 src_install() {
@@ -54,6 +62,7 @@ src_install() {
 
 	cat >> "${T}"/40talosn <<- EOF
 	TALOSN_DIR="${EPREFIX}/${TALOSN}"
+	#BLASTDB=
 	EOF
 	doenvd "${T}"/40talosn
 }