From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 715601381F3 for ; Tue, 18 Jun 2013 09:13:57 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id B5252E08FC; Tue, 18 Jun 2013 09:13:55 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 3C60FE08FC for ; Tue, 18 Jun 2013 09:13:55 +0000 (UTC) Received: from hornbill.gentoo.org (hornbill.gentoo.org [94.100.119.163]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 2715433E5BE for ; Tue, 18 Jun 2013 09:13:54 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by hornbill.gentoo.org (Postfix) with ESMTP id A6018E545C for ; Tue, 18 Jun 2013 09:13:52 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1371546755.1c75b2410a7dce9cc1762cb8c434cbabc12fe3ef.jlec@gentoo> Subject: [gentoo-commits] proj/sci:ccp4 commit in: / X-VCS-Repository: proj/sci X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: 1c75b2410a7dce9cc1762cb8c434cbabc12fe3ef X-VCS-Branch: ccp4 Date: Tue, 18 Jun 2013 09:13:52 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: ee11a707-d7b7-4014-ab77-b32ff4a949ae X-Archives-Hash: 06d272ef472907d034edb36424c9be27 commit: 1c75b2410a7dce9cc1762cb8c434cbabc12fe3ef Author: Justin Lecher gentoo org> AuthorDate: Tue Jun 18 09:12:35 2013 +0000 Commit: Justin Lecher gentoo org> CommitDate: Tue Jun 18 09:12:35 2013 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1c75b241 Merge branch 'master' into ccp4 * master: sci-chemistry/mics: New package sci-chemistry/talosn: New package Abinit & friends upgraded to sci-physics/abinit-7.2.2. BigDFT moved from sci-libs to sci-physics, sci-physics/abinit uses sci-libs/bigdft-abi instead. Usage of LIBDIR/finclude abandoned in favour of /usr/include, as mostly used upstream. Old files cleaned up. Version of bigdft bumped to 1.7_pre24, moved from sci-libs to sci-physics. No longer used as a library by sci-physics/abinit. Usage of LIBDIR/finclude abandoned in favour of /usr/include, as used upstream. Don't let openmpi override malloc, works around sandbox issue in #462602 Fixed bug in jabref ebuild. Renamed ebuild to conform with Gentoo Ebuild Naming Convention (TM). media-gfx/librecad: Cleanup and apply patch from bug #473388 Mangling of the sources of sci-chemistry/freeon reduced, both for 2012.05.03, and for 9999. [sci-chemistry/nMOLDYN] Update deps [sci-chemistry/nMOLDYN] Add to overlay app-text/jabref/ChangeLog | 10 + ...jabref-2.10b.ebuild => jabref-2.10_beta.ebuild} | 8 +- media-gfx/librecad/ChangeLog | 6 + media-gfx/librecad/Manifest | 4 +- media-gfx/librecad/files/1.0.0_rc2-gcc4.6.patch | 38 --- .../files/librecad-1.0.0_rc2-version.patch | 11 - media-gfx/librecad/librecad-1.0.2.ebuild | 45 --- media-gfx/librecad/librecad-2.0.0_beta5.ebuild | 48 --- media-gfx/librecad/librecad-2.0.0_rc1.ebuild | 27 +- media-gfx/librecad/metadata.xml | 23 +- sci-chemistry/freeon/ChangeLog | 9 + ...ch => freeon-2012.05.03-no_internal_hdf5.patch} | 32 +- .../files/freeon-9999-no_internal_hdf5.patch | 25 ++ .../files/freeon-9999-no_internal_libs.patch | 47 --- sci-chemistry/mics/ChangeLog | 10 + sci-chemistry/mics/Manifest | 1 + .../{mgltools-autodocktools => mics}/metadata.xml | 0 sci-chemistry/mics/mics-1.00.2011.327.12.00.ebuild | 51 +++ sci-chemistry/nMOLDYN/ChangeLog | 12 + sci-chemistry/nMOLDYN/Manifest | 1 + sci-chemistry/{trajng => nMOLDYN}/metadata.xml | 0 sci-chemistry/nMOLDYN/nMOLDYN-3.0.10.ebuild | 24 ++ sci-chemistry/talosn/ChangeLog | 10 + sci-chemistry/talosn/Manifest | 1 + .../metadata.xml | 0 .../talosn/talosn-4.01.2013.148.15.55.ebuild | 59 ++++ sci-libs/bigdft-abi/ChangeLog | 12 + sci-libs/bigdft-abi/Manifest | 3 + .../bigdft-abi-1.0.4.ebuild} | 79 +++-- .../files/bigdft-abi-1.0.4-tests.tar.bz2 | Bin 0 -> 402968 bytes sci-libs/etsf_io/ChangeLog | 9 +- ..._io-1.0.3-r1.ebuild => etsf_io-1.0.3-r2.ebuild} | 0 sci-libs/fox/ChangeLog | 10 +- ...patch => 4.1.2-r2-install-customizations.patch} | 0 .../{fox-4.1.2-r1.ebuild => fox-4.1.2-r2.ebuild} | 10 +- sci-libs/libxc/ChangeLog | 11 +- ...libxc-1.1.0-r1.ebuild => libxc-1.2.0-r1.ebuild} | 26 +- .../{libxc-1.2.0.ebuild => libxc-2.0.1.ebuild} | 27 +- sci-libs/mumps/ChangeLog | 5 +- sci-libs/mumps/mumps-4.10.0-r2.ebuild | 5 +- sci-libs/wannier90/ChangeLog | 7 + ...annier90-1.2.ebuild => wannier90-1.2-r1.ebuild} | 0 sci-physics/abinit/ChangeLog | 9 + sci-physics/abinit/abinit-7.0.5.ebuild | 356 --------------------- .../{abinit-7.0.4.ebuild => abinit-7.2.2.ebuild} | 75 +++-- sci-physics/abinit/files/6.0.3-fftw.patch | 14 - .../abinit/files/6.12.1-libabinit_options.patch | 57 ---- sci-physics/abinit/files/6.12.3-gui-makefiles.tbz | Bin 14600 -> 0 bytes sci-physics/atompaw/ChangeLog | 7 + ...aw-3.0.1.9.ebuild => atompaw-3.0.1.9-r1.ebuild} | 11 +- {sci-libs => sci-physics}/bigdft/ChangeLog | 10 +- .../bigdft/bigdft-1.7_pre24.ebuild | 35 +- .../files/bigdft-1.7-dev.24-nolib_mods.patch | 14 +- 53 files changed, 497 insertions(+), 797 deletions(-)