[gentoo-commits] proj/sci:master commit in: sci-chemistry/mics/

["Justin Lecher" <jlec@gentoo.org>]

commit:     4e6c9699879f9b618a8ea9702f5e256da715eb82
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 18 08:54:00 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 18 09:05:22 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=4e6c9699

sci-chemistry/mics: New package

Package-Manager: portage-2.2.0_alpha180

---
 sci-chemistry/mics/ChangeLog                       | 10 +++++
 sci-chemistry/mics/metadata.xml                    |  5 +++
 sci-chemistry/mics/mics-1.00.2011.327.12.00.ebuild | 51 ++++++++++++++++++++++
 3 files changed, 66 insertions(+)

diff --git a/sci-chemistry/mics/ChangeLog b/sci-chemistry/mics/ChangeLog
new file mode 100644
index 0000000..0ca4c98
--- /dev/null
+++ b/sci-chemistry/mics/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-chemistry/mics
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*mics-1.00.2011.327.12.00 (18 Jun 2013)
+
+  18 Jun 2013; Justin Lecher <jlec@gentoo.org>
+  +mics-1.00.2011.327.12.00.ebuild, +metadata.xml:
+  New package
+

diff --git a/sci-chemistry/mics/metadata.xml b/sci-chemistry/mics/metadata.xml
new file mode 100644
index 0000000..51fdeda
--- /dev/null
+++ b/sci-chemistry/mics/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-chemistry</herd>
+</pkgmetadata>

diff --git a/sci-chemistry/mics/mics-1.00.2011.327.12.00.ebuild b/sci-chemistry/mics/mics-1.00.2011.327.12.00.ebuild
new file mode 100644
index 0000000..5f86a08
--- /dev/null
+++ b/sci-chemistry/mics/mics-1.00.2011.327.12.00.ebuild
@@ -0,0 +1,51 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit java-pkg-opt-2
+
+DESCRIPTION="Prediction of Protein Structural Motifs from NMR Chemical Shifts"
+HOMEPAGE="http://spin.niddk.nih.gov/bax/software/MICS/"
+SRC_URI="http://spin.niddk.nih.gov/bax/software/MICS/mics.tar.Z -> ${P}.tgz"
+
+SLOT="0"
+LICENSE="all-rights-reserved"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="examples"
+
+RDEPEND=">=virtual/jre-1.5"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}"/MICS
+
+QA_PREBUILT="/opt/.*"
+
+src_prepare() {
+	rm -f bin/MICS.{mac,static.*,exe} || die
+}
+
+src_install() {
+	local MICS="/opt/${PN}"
+	exeinto /opt/bin
+	newexe bin/MICS* ${PN}
+
+	insinto ${MICS}
+	doins -r tab
+
+	java-pkg_jarinto ${MICS}
+	java-pkg_dojar bin/rama.jar
+
+	java-pkg_dolauncher jrama+ --jar rama.jar -into /opt/
+
+	if use examples; then
+		insinto /usr/share/${PN}
+		doins -r demo
+	fi
+
+	cat >> "${T}"/40MICS <<- EOF
+	MICS_DIR="${EPREFIX}/${MICS}"
+	EOF
+	doenvd "${T}"/40MICS
+}