From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 898761381F3 for ; Tue, 18 Jun 2013 09:07:47 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id AD6BBE0931; Tue, 18 Jun 2013 09:07:45 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id D2CD7E0931 for ; Tue, 18 Jun 2013 09:07:44 +0000 (UTC) Received: from hornbill.gentoo.org (hornbill.gentoo.org [94.100.119.163]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id AE65433E563 for ; Tue, 18 Jun 2013 09:07:43 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by hornbill.gentoo.org (Postfix) with ESMTP id 40EC4E5461 for ; Tue, 18 Jun 2013 09:07:42 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1371546322.49368d48095f653b5edef0fb863d5b5e70c0a2d1.jlec@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-chemistry/talosn/ X-VCS-Repository: proj/sci X-VCS-Files: sci-chemistry/talosn/ChangeLog sci-chemistry/talosn/metadata.xml sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild X-VCS-Directories: sci-chemistry/talosn/ X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: 49368d48095f653b5edef0fb863d5b5e70c0a2d1 X-VCS-Branch: master Date: Tue, 18 Jun 2013 09:07:42 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: f3db8cc6-f719-42b1-a91d-8b9fa87e1687 X-Archives-Hash: 959a82704e07c41030044e70d0674a96 commit: 49368d48095f653b5edef0fb863d5b5e70c0a2d1 Author: Justin Lecher gentoo org> AuthorDate: Tue Jun 18 08:44:19 2013 +0000 Commit: Justin Lecher gentoo org> CommitDate: Tue Jun 18 09:05:22 2013 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=49368d48 sci-chemistry/talosn: New package Package-Manager: portage-2.2.0_alpha180 --- sci-chemistry/talosn/ChangeLog | 10 ++++ sci-chemistry/talosn/metadata.xml | 5 ++ .../talosn/talosn-4.01.2013.148.15.55.ebuild | 59 ++++++++++++++++++++++ 3 files changed, 74 insertions(+) diff --git a/sci-chemistry/talosn/ChangeLog b/sci-chemistry/talosn/ChangeLog new file mode 100644 index 0000000..dea3c84 --- /dev/null +++ b/sci-chemistry/talosn/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-chemistry/talosn +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*talosn-4.01.2013.148.15.55 (18 Jun 2013) + + 18 Jun 2013; Justin Lecher + +talosn-4.01.2013.148.15.55.ebuild, +metadata.xml: + New package + diff --git a/sci-chemistry/talosn/metadata.xml b/sci-chemistry/talosn/metadata.xml new file mode 100644 index 0000000..51fdeda --- /dev/null +++ b/sci-chemistry/talosn/metadata.xml @@ -0,0 +1,5 @@ + + + + sci-chemistry + diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild new file mode 100644 index 0000000..ac569c3 --- /dev/null +++ b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild @@ -0,0 +1,59 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit java-pkg-opt-2 + +DESCRIPTION="Prediction of Protein Backbone and Sidechain Torsion Angles from NMR Chemical Shifts" +HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/" +SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz" + +SLOT="0" +LICENSE="all-rights-reserved" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="examples" + +RDEPEND=">=virtual/jre-1.5" +DEPEND="${RDEPEND}" + +S="${WORKDIR}" + +QA_PREBUILT="/opt/.*" + +src_prepare() { + local s64 + use amd64 || s64="_x64" + rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die +} + +src_install() { + local TALOSN="/opt/${PN}" + exeinto ${TALOSN}/bin + doexe bin/* + + exeinto ${TALOSN}/com + doexe com/* + + exeinto /opt/bin + doexe talosn{,_ss} + + insinto ${TALOSN} + doins -r tab + + java-pkg_jarinto ${TALOSN} + java-pkg_dojar rama.jar + + java-pkg_dolauncher jrama --jar rama.jar -into /opt/ + + if use examples; then + insinto /usr/share/${PN} + doins -r demo + fi + + cat >> "${T}"/40talosn <<- EOF + TALOSN_DIR="${EPREFIX}/${TALOSN}" + EOF + doenvd "${T}"/40talosn +}