* [gentoo-commits] proj/sci:fixing commit in: sci-chemistry/talosn/
@ 2013-06-18 8:54 Justin Lecher
2013-06-18 8:56 ` [gentoo-commits] proj/sci:master " Justin Lecher
0 siblings, 1 reply; 2+ messages in thread
From: Justin Lecher @ 2013-06-18 8:54 UTC (permalink / raw
To: gentoo-commits
commit: 1181076dda88bff9cba8aa1432fdcaa5a14ba144
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 18 08:44:19 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 18 08:44:19 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1181076d
sci-chemistry/talosn: New package
Package-Manager: portage-2.2.0_alpha180
---
sci-chemistry/talosn/ChangeLog | 10 ++++
sci-chemistry/talosn/metadata.xml | 5 ++
.../talosn/talosn-4.01.2013.148.15.55.ebuild | 59 ++++++++++++++++++++++
3 files changed, 74 insertions(+)
diff --git a/sci-chemistry/talosn/ChangeLog b/sci-chemistry/talosn/ChangeLog
new file mode 100644
index 0000000..dea3c84
--- /dev/null
+++ b/sci-chemistry/talosn/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-chemistry/talosn
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*talosn-4.01.2013.148.15.55 (18 Jun 2013)
+
+ 18 Jun 2013; Justin Lecher <jlec@gentoo.org>
+ +talosn-4.01.2013.148.15.55.ebuild, +metadata.xml:
+ New package
+
diff --git a/sci-chemistry/talosn/metadata.xml b/sci-chemistry/talosn/metadata.xml
new file mode 100644
index 0000000..51fdeda
--- /dev/null
+++ b/sci-chemistry/talosn/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-chemistry</herd>
+</pkgmetadata>
diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
new file mode 100644
index 0000000..ac569c3
--- /dev/null
+++ b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
@@ -0,0 +1,59 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit java-pkg-opt-2
+
+DESCRIPTION="Prediction of Protein Backbone and Sidechain Torsion Angles from NMR Chemical Shifts"
+HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/"
+SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
+
+SLOT="0"
+LICENSE="all-rights-reserved"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="examples"
+
+RDEPEND=">=virtual/jre-1.5"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}"
+
+QA_PREBUILT="/opt/.*"
+
+src_prepare() {
+ local s64
+ use amd64 || s64="_x64"
+ rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die
+}
+
+src_install() {
+ local TALOSN="/opt/${PN}"
+ exeinto ${TALOSN}/bin
+ doexe bin/*
+
+ exeinto ${TALOSN}/com
+ doexe com/*
+
+ exeinto /opt/bin
+ doexe talosn{,_ss}
+
+ insinto ${TALOSN}
+ doins -r tab
+
+ java-pkg_jarinto ${TALOSN}
+ java-pkg_dojar rama.jar
+
+ java-pkg_dolauncher jrama --jar rama.jar -into /opt/
+
+ if use examples; then
+ insinto /usr/share/${PN}
+ doins -r demo
+ fi
+
+ cat >> "${T}"/40talosn <<- EOF
+ TALOSN_DIR="${EPREFIX}/${TALOSN}"
+ EOF
+ doenvd "${T}"/40talosn
+}
^ permalink raw reply related [flat|nested] 2+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/talosn/
2013-06-18 8:54 [gentoo-commits] proj/sci:fixing commit in: sci-chemistry/talosn/ Justin Lecher
@ 2013-06-18 8:56 ` Justin Lecher
0 siblings, 0 replies; 2+ messages in thread
From: Justin Lecher @ 2013-06-18 8:56 UTC (permalink / raw
To: gentoo-commits
commit: 1181076dda88bff9cba8aa1432fdcaa5a14ba144
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 18 08:44:19 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 18 08:44:19 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1181076d
sci-chemistry/talosn: New package
Package-Manager: portage-2.2.0_alpha180
---
sci-chemistry/talosn/ChangeLog | 10 ++++
sci-chemistry/talosn/metadata.xml | 5 ++
.../talosn/talosn-4.01.2013.148.15.55.ebuild | 59 ++++++++++++++++++++++
3 files changed, 74 insertions(+)
diff --git a/sci-chemistry/talosn/ChangeLog b/sci-chemistry/talosn/ChangeLog
new file mode 100644
index 0000000..dea3c84
--- /dev/null
+++ b/sci-chemistry/talosn/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-chemistry/talosn
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*talosn-4.01.2013.148.15.55 (18 Jun 2013)
+
+ 18 Jun 2013; Justin Lecher <jlec@gentoo.org>
+ +talosn-4.01.2013.148.15.55.ebuild, +metadata.xml:
+ New package
+
diff --git a/sci-chemistry/talosn/metadata.xml b/sci-chemistry/talosn/metadata.xml
new file mode 100644
index 0000000..51fdeda
--- /dev/null
+++ b/sci-chemistry/talosn/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-chemistry</herd>
+</pkgmetadata>
diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
new file mode 100644
index 0000000..ac569c3
--- /dev/null
+++ b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
@@ -0,0 +1,59 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit java-pkg-opt-2
+
+DESCRIPTION="Prediction of Protein Backbone and Sidechain Torsion Angles from NMR Chemical Shifts"
+HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/"
+SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
+
+SLOT="0"
+LICENSE="all-rights-reserved"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="examples"
+
+RDEPEND=">=virtual/jre-1.5"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}"
+
+QA_PREBUILT="/opt/.*"
+
+src_prepare() {
+ local s64
+ use amd64 || s64="_x64"
+ rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die
+}
+
+src_install() {
+ local TALOSN="/opt/${PN}"
+ exeinto ${TALOSN}/bin
+ doexe bin/*
+
+ exeinto ${TALOSN}/com
+ doexe com/*
+
+ exeinto /opt/bin
+ doexe talosn{,_ss}
+
+ insinto ${TALOSN}
+ doins -r tab
+
+ java-pkg_jarinto ${TALOSN}
+ java-pkg_dojar rama.jar
+
+ java-pkg_dolauncher jrama --jar rama.jar -into /opt/
+
+ if use examples; then
+ insinto /usr/share/${PN}
+ doins -r demo
+ fi
+
+ cat >> "${T}"/40talosn <<- EOF
+ TALOSN_DIR="${EPREFIX}/${TALOSN}"
+ EOF
+ doenvd "${T}"/40talosn
+}
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2013-06-18 8:54 [gentoo-commits] proj/sci:fixing commit in: sci-chemistry/talosn/ Justin Lecher
2013-06-18 8:56 ` [gentoo-commits] proj/sci:master " Justin Lecher
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