From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 719D31381F3 for ; Mon, 17 Jun 2013 05:55:56 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 102E0E0848; Mon, 17 Jun 2013 05:55:40 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 8FD2BE0848 for ; Mon, 17 Jun 2013 05:55:39 +0000 (UTC) Received: from hornbill.gentoo.org (hornbill.gentoo.org [94.100.119.163]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 6B3C033E532 for ; Mon, 17 Jun 2013 05:55:38 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by hornbill.gentoo.org (Postfix) with ESMTP id 188DBE5459 for ; Mon, 17 Jun 2013 05:55:37 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1371448484.b26366da352ed3bf258da85228b0844317178372.jlec@gentoo> Subject: [gentoo-commits] proj/sci:ccp4 commit in: / X-VCS-Repository: proj/sci X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: b26366da352ed3bf258da85228b0844317178372 X-VCS-Branch: ccp4 Date: Mon, 17 Jun 2013 05:55:37 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 6e5c6c04-9181-49b8-9fa5-8f1cabf0d44d X-Archives-Hash: 5b5183faab3a79098a614992d42dec46 commit: b26366da352ed3bf258da85228b0844317178372 Author: Justin Lecher gentoo org> AuthorDate: Mon Jun 17 05:54:44 2013 +0000 Commit: Justin Lecher gentoo org> CommitDate: Mon Jun 17 05:54:44 2013 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b26366da Merge branch 'master' into ccp4 * master: add missing masks for live ebuilds dev-python/healpy: Initial import dev-java/jhealpix: Initial import sci-astronomy/healpix_idl: Initial import sci-astronomy/healpix_cxx: Initial import sci-astronomy/chealpix: Initial import sci-biology/twinscan: Bump to EAPI=5 and fix license sci-biology/ssaha2-bin: Version Bump; restrict license; add QA_PREBUILT for binaries sci-biology/smalt-bin: Version Bump; restrict license; add QA_PREBUILT for binaries sci-biology/sequin: Version BUmp; restrcit license; add QA_PREBUILT for binaries; install html files into sys path sci-biology/quicktree: Bump to EAPI=5 and fix license sci-biology/gap2caf: Bump to EAPI=5 and fix license; make it build with eautoreconf sci-biology/erpin: Bump to EAPI=5 and respect FLAGS / AR sci-biology/clover: Version BUmp; fixed license; respect LDFLAGS sci-chemistry/shiftx2: Respect FLAGS Enhanced the sci-chemistry/shiftx ebuild. Still needs some love for the emake part (portage complains about LDFLAGS not respected), but should work. broken ebuild for java fixing Signed-off-by: Justin Lecher gentoo.org> sci-astronomy/astrometry: Added extra use flag to plot sci-astronomy/astrometry: Added python bindings. Fixed more gsl bundling dev-java/jhealpix/ChangeLog | 9 + dev-java/jhealpix/Manifest | 1 + dev-java/jhealpix/jhealpix-3.11.ebuild | 43 ++++ dev-java/jhealpix/metadata.xml | 11 + dev-python/healpy/ChangeLog | 9 + dev-python/healpy/Manifest | 1 + dev-python/healpy/healpy-1.6.2.ebuild | 34 ++++ dev-python/healpy/metadata.xml | 10 + profiles/package.mask | 5 + sci-astronomy/astrometry/ChangeLog | 7 + sci-astronomy/astrometry/astrometry-0.43.ebuild | 40 ++-- .../astrometry/files/0.43-system-libs.patch | 226 ++++++++++++--------- sci-astronomy/astrometry/metadata.xml | 7 +- sci-astronomy/chealpix/ChangeLog | 9 + sci-astronomy/chealpix/Manifest | 1 + sci-astronomy/chealpix/chealpix-3.11.ebuild | 30 +++ sci-astronomy/chealpix/metadata.xml | 11 + sci-astronomy/healpix_cxx/ChangeLog | 9 + sci-astronomy/healpix_cxx/Manifest | 1 + sci-astronomy/healpix_cxx/healpix_cxx-3.11.ebuild | 54 +++++ sci-astronomy/healpix_cxx/metadata.xml | 12 ++ sci-astronomy/healpix_idl/ChangeLog | 9 + sci-astronomy/healpix_idl/Manifest | 1 + sci-astronomy/healpix_idl/healpix_idl-3.11.ebuild | 37 ++++ sci-astronomy/healpix_idl/metadata.xml | 12 ++ sci-biology/clover/ChangeLog | 6 +- sci-biology/clover/Manifest | 4 +- sci-biology/clover/clover-2010.02.19.ebuild | 43 ---- sci-biology/clover/clover-2011.10.24.ebuild | 40 ++++ sci-biology/clover/metadata.xml | 6 +- sci-biology/erpin/ChangeLog | 5 +- sci-biology/erpin/Manifest | 4 +- sci-biology/erpin/erpin-5.5b.ebuild | 23 ++- sci-biology/erpin/metadata.xml | 10 +- sci-biology/gap2caf/ChangeLog | 8 + sci-biology/gap2caf/Manifest | 4 +- sci-biology/gap2caf/gap2caf-2.1.0.ebuild | 45 ++-- sci-biology/gap2caf/metadata.xml | 10 +- sci-biology/quicktree/ChangeLog | 6 +- sci-biology/quicktree/Manifest | 2 +- sci-biology/quicktree/metadata.xml | 10 +- sci-biology/quicktree/quicktree-1.1-r1.ebuild | 17 +- sci-biology/sequin/ChangeLog | 9 +- sci-biology/sequin/Manifest | 4 +- sci-biology/sequin/sequin-20090722.ebuild | 32 --- sci-biology/sequin/sequin-20121202.ebuild | 44 ++++ sci-biology/smalt-bin/ChangeLog | 8 +- sci-biology/smalt-bin/Manifest | 2 +- sci-biology/smalt-bin/metadata.xml | 10 +- sci-biology/smalt-bin/smalt-bin-0.5.1.ebuild | 25 --- sci-biology/smalt-bin/smalt-bin-0.7.4.ebuild | 31 +++ sci-biology/ssaha2-bin/ChangeLog | 6 +- sci-biology/ssaha2-bin/Manifest | 9 +- sci-biology/ssaha2-bin/metadata.xml | 10 +- ...a2-bin-2.5.3.ebuild => ssaha2-bin-2.5.5.ebuild} | 26 ++- sci-biology/twinscan/ChangeLog | 6 +- sci-biology/twinscan/Manifest | 2 +- sci-biology/twinscan/metadata.xml | 10 +- sci-biology/twinscan/twinscan-4.1.2.ebuild | 30 ++- sci-chemistry/shiftx2/ChangeLog | 8 + sci-chemistry/shiftx2/Manifest | 1 + sci-chemistry/shiftx2/files/gentoo-fixes.patch | 194 ++++++++++++++++++ sci-chemistry/shiftx2/metadata.xml | 39 ++++ .../shiftx2/shiftx2-1.07_p20120106.ebuild | 112 ++++++++++ 64 files changed, 1127 insertions(+), 323 deletions(-)