From: "Justin Lecher" <jlec@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:ccp4 commit in: /
Date: Mon, 17 Jun 2013 05:55:37 +0000 (UTC) [thread overview]
Message-ID: <1371448484.b26366da352ed3bf258da85228b0844317178372.jlec@gentoo> (raw)
commit: b26366da352ed3bf258da85228b0844317178372
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Jun 17 05:54:44 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jun 17 05:54:44 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b26366da
Merge branch 'master' into ccp4
* master:
add missing masks for live ebuilds
dev-python/healpy: Initial import
dev-java/jhealpix: Initial import
sci-astronomy/healpix_idl: Initial import
sci-astronomy/healpix_cxx: Initial import
sci-astronomy/chealpix: Initial import
sci-biology/twinscan: Bump to EAPI=5 and fix license
sci-biology/ssaha2-bin: Version Bump; restrict license; add QA_PREBUILT for binaries
sci-biology/smalt-bin: Version Bump; restrict license; add QA_PREBUILT for binaries
sci-biology/sequin: Version BUmp; restrcit license; add QA_PREBUILT for binaries; install html files into sys path
sci-biology/quicktree: Bump to EAPI=5 and fix license
sci-biology/gap2caf: Bump to EAPI=5 and fix license; make it build with eautoreconf
sci-biology/erpin: Bump to EAPI=5 and respect FLAGS / AR
sci-biology/clover: Version BUmp; fixed license; respect LDFLAGS
sci-chemistry/shiftx2: Respect FLAGS
Enhanced the sci-chemistry/shiftx ebuild. Still needs some love for the emake part (portage complains about LDFLAGS not respected), but should work.
broken ebuild for java fixing Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-astronomy/astrometry: Added extra use flag to plot
sci-astronomy/astrometry: Added python bindings. Fixed more gsl bundling
dev-java/jhealpix/ChangeLog | 9 +
dev-java/jhealpix/Manifest | 1 +
dev-java/jhealpix/jhealpix-3.11.ebuild | 43 ++++
dev-java/jhealpix/metadata.xml | 11 +
dev-python/healpy/ChangeLog | 9 +
dev-python/healpy/Manifest | 1 +
dev-python/healpy/healpy-1.6.2.ebuild | 34 ++++
dev-python/healpy/metadata.xml | 10 +
profiles/package.mask | 5 +
sci-astronomy/astrometry/ChangeLog | 7 +
sci-astronomy/astrometry/astrometry-0.43.ebuild | 40 ++--
.../astrometry/files/0.43-system-libs.patch | 226 ++++++++++++---------
sci-astronomy/astrometry/metadata.xml | 7 +-
sci-astronomy/chealpix/ChangeLog | 9 +
sci-astronomy/chealpix/Manifest | 1 +
sci-astronomy/chealpix/chealpix-3.11.ebuild | 30 +++
sci-astronomy/chealpix/metadata.xml | 11 +
sci-astronomy/healpix_cxx/ChangeLog | 9 +
sci-astronomy/healpix_cxx/Manifest | 1 +
sci-astronomy/healpix_cxx/healpix_cxx-3.11.ebuild | 54 +++++
sci-astronomy/healpix_cxx/metadata.xml | 12 ++
sci-astronomy/healpix_idl/ChangeLog | 9 +
sci-astronomy/healpix_idl/Manifest | 1 +
sci-astronomy/healpix_idl/healpix_idl-3.11.ebuild | 37 ++++
sci-astronomy/healpix_idl/metadata.xml | 12 ++
sci-biology/clover/ChangeLog | 6 +-
sci-biology/clover/Manifest | 4 +-
sci-biology/clover/clover-2010.02.19.ebuild | 43 ----
sci-biology/clover/clover-2011.10.24.ebuild | 40 ++++
sci-biology/clover/metadata.xml | 6 +-
sci-biology/erpin/ChangeLog | 5 +-
sci-biology/erpin/Manifest | 4 +-
sci-biology/erpin/erpin-5.5b.ebuild | 23 ++-
sci-biology/erpin/metadata.xml | 10 +-
sci-biology/gap2caf/ChangeLog | 8 +
sci-biology/gap2caf/Manifest | 4 +-
sci-biology/gap2caf/gap2caf-2.1.0.ebuild | 45 ++--
sci-biology/gap2caf/metadata.xml | 10 +-
sci-biology/quicktree/ChangeLog | 6 +-
sci-biology/quicktree/Manifest | 2 +-
sci-biology/quicktree/metadata.xml | 10 +-
sci-biology/quicktree/quicktree-1.1-r1.ebuild | 17 +-
sci-biology/sequin/ChangeLog | 9 +-
sci-biology/sequin/Manifest | 4 +-
sci-biology/sequin/sequin-20090722.ebuild | 32 ---
sci-biology/sequin/sequin-20121202.ebuild | 44 ++++
sci-biology/smalt-bin/ChangeLog | 8 +-
sci-biology/smalt-bin/Manifest | 2 +-
sci-biology/smalt-bin/metadata.xml | 10 +-
sci-biology/smalt-bin/smalt-bin-0.5.1.ebuild | 25 ---
sci-biology/smalt-bin/smalt-bin-0.7.4.ebuild | 31 +++
sci-biology/ssaha2-bin/ChangeLog | 6 +-
sci-biology/ssaha2-bin/Manifest | 9 +-
sci-biology/ssaha2-bin/metadata.xml | 10 +-
...a2-bin-2.5.3.ebuild => ssaha2-bin-2.5.5.ebuild} | 26 ++-
sci-biology/twinscan/ChangeLog | 6 +-
sci-biology/twinscan/Manifest | 2 +-
sci-biology/twinscan/metadata.xml | 10 +-
sci-biology/twinscan/twinscan-4.1.2.ebuild | 30 ++-
sci-chemistry/shiftx2/ChangeLog | 8 +
sci-chemistry/shiftx2/Manifest | 1 +
sci-chemistry/shiftx2/files/gentoo-fixes.patch | 194 ++++++++++++++++++
sci-chemistry/shiftx2/metadata.xml | 39 ++++
.../shiftx2/shiftx2-1.07_p20120106.ebuild | 112 ++++++++++
64 files changed, 1127 insertions(+), 323 deletions(-)
next reply other threads:[~2013-06-17 5:55 UTC|newest]
Thread overview: 70+ messages / expand[flat|nested] mbox.gz Atom feed top
2013-06-17 5:55 Justin Lecher [this message]
-- strict thread matches above, loose matches on Subject: below --
2013-07-11 20:26 [gentoo-commits] proj/sci:vtk commit in: / Justin Lecher
2013-07-08 11:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-07-11 20:26 [gentoo-commits] proj/sci:vtk " Justin Lecher
2013-07-08 11:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-07-08 11:54 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-07-08 11:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-07-08 11:54 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-07-08 11:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-07-08 11:54 Justin Lecher
2013-07-08 11:54 Justin Lecher
2013-06-26 7:09 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-19 6:53 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-19 6:53 Justin Lecher
2013-06-19 6:53 Justin Lecher
2013-06-18 9:13 Justin Lecher
2013-06-18 9:13 Justin Lecher
2013-06-18 9:11 Justin Lecher
2013-06-18 8:57 Justin Lecher
2013-06-18 8:54 [gentoo-commits] proj/sci:fixing " Justin Lecher
2013-06-18 8:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-19 6:53 ` Justin Lecher
2013-06-18 8:54 Justin Lecher
2013-06-17 5:55 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-13 7:08 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17 5:55 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-13 7:08 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17 5:55 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-13 7:08 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17 5:55 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-13 7:08 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17 5:55 [gentoo-commits] proj/sci:fixing " Justin Lecher
2013-06-17 5:55 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17 5:55 [gentoo-commits] proj/sci:fixing " Justin Lecher
2013-06-17 5:55 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17 5:55 Justin Lecher
2013-06-17 5:55 Justin Lecher
2013-06-16 17:23 [gentoo-commits] proj/sci:master " Justin Lecher
2013-06-17 5:55 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-16 15:53 Justin Lecher
2013-06-16 14:23 [gentoo-commits] proj/sci:fixing " Justin Lecher
2013-06-16 14:23 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-16 14:23 Justin Lecher
2013-06-14 11:21 Justin Lecher
2013-06-13 7:08 Justin Lecher
2013-06-13 7:08 Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-04 11:59 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-04 11:59 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-01 17:24 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-01 17:24 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-10 12:01 Justin Lecher
2013-06-10 12:01 Justin Lecher
2013-06-10 11:57 [gentoo-commits] proj/sci:master " Justin Lecher
2013-06-10 12:01 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-04 11:59 Justin Lecher
2013-06-04 11:59 Justin Lecher
2013-06-01 17:24 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-30 10:31 Justin Lecher
2013-05-15 6:19 [gentoo-commits] proj/sci:master " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-05-15 6:19 [gentoo-commits] proj/sci:master " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-05-06 8:26 [gentoo-commits] proj/sci:master " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2012-12-12 9:23 Justin Lecher
2012-12-12 9:23 Justin Lecher
2012-12-10 14:47 [gentoo-commits] proj/sci:master " Justin Lecher
2012-12-12 9:23 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=1371448484.b26366da352ed3bf258da85228b0844317178372.jlec@gentoo \
--to=jlec@gentoo.org \
--cc=gentoo-commits@lists.gentoo.org \
--cc=gentoo-dev@lists.gentoo.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox