[gentoo-commits] proj/sci:fixing commit in: sci-biology/smalt-bin/

["Justin Lecher" <jlec@gentoo.org>]

commit:     36032ab3249b80b8d49af5f05d86878dc7c4b7a4
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 16 19:43:57 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jun 16 19:43:57 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=36032ab3

sci-biology/smalt-bin: Version Bump; restrict license; add QA_PREBUILT for binaries

Package-Manager: portage-2.2.0_alpha180

---
 sci-biology/smalt-bin/ChangeLog              |  8 ++++++-
 sci-biology/smalt-bin/metadata.xml           | 10 ++++-----
 sci-biology/smalt-bin/smalt-bin-0.5.1.ebuild | 25 ----------------------
 sci-biology/smalt-bin/smalt-bin-0.7.4.ebuild | 31 ++++++++++++++++++++++++++++
 4 files changed, 43 insertions(+), 31 deletions(-)

diff --git a/sci-biology/smalt-bin/ChangeLog b/sci-biology/smalt-bin/ChangeLog
index f3268fd..7f6f91f 100644
--- a/sci-biology/smalt-bin/ChangeLog
+++ b/sci-biology/smalt-bin/ChangeLog
@@ -1,7 +1,13 @@
 # ChangeLog for sci-biology/smalt-bin
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*smalt-bin-0.7.4 (16 Jun 2013)
+
+  16 Jun 2013; Justin Lecher <jlec@gentoo.org> -smalt-bin-0.5.1.ebuild,
+  +smalt-bin-0.7.4.ebuild, metadata.xml:
+  Version Bump; restrict license; add QA_PREBUILT for binaries
+
   25 Jun 2011; Justin Lecher <jlec@gentoo.org> smalt-bin-0.5.1.ebuild:
   Cleaned ebuild and fixed LICENSE
 

diff --git a/sci-biology/smalt-bin/metadata.xml b/sci-biology/smalt-bin/metadata.xml
index 07b5255..2bc8930 100644
--- a/sci-biology/smalt-bin/metadata.xml
+++ b/sci-biology/smalt-bin/metadata.xml
@@ -1,9 +1,9 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-	<herd>sci-biology</herd>
-	<maintainer>
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
 </pkgmetadata>

diff --git a/sci-biology/smalt-bin/smalt-bin-0.5.1.ebuild b/sci-biology/smalt-bin/smalt-bin-0.5.1.ebuild
deleted file mode 100644
index 7566c20..0000000
--- a/sci-biology/smalt-bin/smalt-bin-0.5.1.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=4
-
-DESCRIPTION="Pairwise sequence alignment mapping DNA reads onto genomic reference, better over SSAHA2"
-HOMEPAGE="http://www.sanger.ac.uk/resources/software/smalt/"
-SRC_URI="ftp://ftp.sanger.ac.uk/pub4/resources/software/smalt/smalt-"${PV}".tgz"
-
-LICENSE="as-is"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE=""
-
-S="${WORKDIR}"/smalt-"${PV}"
-
-src_install(){
-	use x86 && newbin smalt_i386 smalt
-	use amd64 && newbin smalt_x86_64 smalt
-	use ia64 && newbin smalt_ia64
-
-	dodoc NEWS smalt_manual.pdf
-	doman smalt.1
-}

diff --git a/sci-biology/smalt-bin/smalt-bin-0.7.4.ebuild b/sci-biology/smalt-bin/smalt-bin-0.7.4.ebuild
new file mode 100644
index 0000000..01acc05
--- /dev/null
+++ b/sci-biology/smalt-bin/smalt-bin-0.7.4.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+MY_PN="${PN%-bin}"
+MY_P="${MY_PN}-${PV}"
+
+DESCRIPTION="Pairwise sequence alignment mapping DNA reads onto genomic reference, better over SSAHA2"
+HOMEPAGE="http://www.sanger.ac.uk/resources/software/smalt/"
+SRC_URI="ftp://ftp.sanger.ac.uk/pub4/resources/software/${MY_PN}/${MY_P}.tgz"
+
+LICENSE="all-rights-reserved"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+S="${WORKDIR}"/${MY_P}
+
+QA_PREBUILT="/opt/.*"
+
+src_install(){
+	exeinto /opt/bin
+	use x86 && newexe ${MY_PN}_i386 ${MY_PN}
+	use amd64 && newexe ${MY_PN}_x86_64 ${MY_PN}
+	use ia64 && newexe ${MY_PN}_ia64 ${MY_PN}
+
+	dodoc NEWS ${MY_PN}_manual.pdf
+	doman ${MY_PN}.1
+}