[gentoo-commits] proj/sci:fixing commit in: sci-biology/erpin/

[gentoo-commits] proj/sci:fixing commit in: sci-biology/erpin/

[Justin Lecher]

commit:     9e506aa5543ae1f1a782b63f201c756aa0ee5a7f
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 16 19:18:01 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jun 16 19:18:01 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=9e506aa5

sci-biology/erpin: Bump to EAPI=5 and respect FLAGS / AR

Package-Manager: portage-2.2.0_alpha180

---
 sci-biology/erpin/ChangeLog         |  5 ++++-
 sci-biology/erpin/erpin-5.5b.ebuild | 23 +++++++++++++----------
 sci-biology/erpin/metadata.xml      | 10 +++++-----
 3 files changed, 22 insertions(+), 16 deletions(-)

diff --git a/sci-biology/erpin/ChangeLog b/sci-biology/erpin/ChangeLog
index f98fe95..de94a48 100644
--- a/sci-biology/erpin/ChangeLog
+++ b/sci-biology/erpin/ChangeLog
@@ -1,7 +1,10 @@
 # ChangeLog for sci-biology/erpin
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  16 Jun 2013; Justin Lecher <jlec@gentoo.org> erpin-5.5b.ebuild, metadata.xml:
+  Bump to EAPI=5 and respect FLAGS / AR
+
   23 Nov 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
   New package, ebuild written by me
 

diff --git a/sci-biology/erpin/erpin-5.5b.ebuild b/sci-biology/erpin/erpin-5.5b.ebuild
index 8aafe20..3673a32 100644
--- a/sci-biology/erpin/erpin-5.5b.ebuild
+++ b/sci-biology/erpin/erpin-5.5b.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2009 Gentoo Foundation
+# Copyright 1999-2013 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.10.1.ebuild,v 1.3 2009/09/22 11:43:28 maekke Exp $
 
-EAPI="2"
+EAPI=5
 
 inherit toolchain-funcs
 
@@ -10,10 +10,11 @@ ERPIN_BATCH_V=1.4
 
 DESCRIPTION="Easy RNA Profile IdentificatioN, an RNA motif search program"
 HOMEPAGE="http://tagc.univ-mrs.fr/erpin/"
-SRC_URI="http://rna.igmors.u-psud.fr/download/Erpin/erpin${PV}.serv.tar.gz
+SRC_URI="
+	http://rna.igmors.u-psud.fr/download/Erpin/erpin${PV}.serv.tar.gz
 	http://rna.igmors.u-psud.fr/download/Erpin/ErpinBatch.${ERPIN_BATCH_V}.tar.gz"
 
-LICENSE="as-is"
+LICENSE="all-rights-reserved"
 SLOT="0"
 IUSE=""
 KEYWORDS="~amd64 ~x86"
@@ -29,19 +30,21 @@ src_prepare() {
 	find -name '*.mk' | xargs sed -i \
 		-e 's/strip $@/echo skipping strip $@/' \
 		-e '/CFLAGS =/ d' \
-		-e "s/CC = .*/CC = $(tc-getCC)/" || die
+		-e "s/CC = .*/CC = $(tc-getCC)/" \
+		-e "s: -o : ${LDFLAGS} -o :g" \
+		-e "s:ar :$(tc-getAR) :g" || die
 	sed -i 's/cc -O2/$(tc-getCC) ${CFLAGS}/' erpin${PV}.serv/sum/sum.mk || die
 }
 
 src_compile() {
-	emake -C erpin${PV}.serv -f erpin.mk || die
+	emake -C erpin${PV}.serv -f erpin.mk
 }
 
 src_install() {
-	dobin erpin${PV}.serv/bin/* || die
+	dobin erpin${PV}.serv/bin/*
 	insinto /usr/share/${PN}
-	doins -r erpin${PV}.serv/scripts ErpinBatch.${ERPIN_BATCH_V} || die
+	doins -r erpin${PV}.serv/scripts ErpinBatch.${ERPIN_BATCH_V}
 	exeinto /usr/share/${PN}
-	newexe "${FILESDIR}/erpincommand-${PV}.pl" erpincommand.pl || die
-	dodoc erpin${PV}.serv/doc/doc*.pdf || die
+	newexe "${FILESDIR}/erpincommand-${PV}.pl" erpincommand
+	dodoc erpin${PV}.serv/doc/doc*.pdf
 }

diff --git a/sci-biology/erpin/metadata.xml b/sci-biology/erpin/metadata.xml
index 3302123..fc7c769 100644
--- a/sci-biology/erpin/metadata.xml
+++ b/sci-biology/erpin/metadata.xml
@@ -1,9 +1,9 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-	<maintainer>
-		<email>weaver@gentoo.org</email>
-		<name>Andrey Kislyuk</name>
-	</maintainer>
-	<herd>sci-biology</herd>
+  <maintainer>
+    <email>weaver@gentoo.org</email>
+    <name>Andrey Kislyuk</name>
+  </maintainer>
+  <herd>sci-biology</herd>
 </pkgmetadata>