From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 2C8331381F3 for ; Sun, 16 Jun 2013 20:20:08 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 48003E09C4; Sun, 16 Jun 2013 20:19:15 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 930C5E09AD for ; Sun, 16 Jun 2013 20:19:04 +0000 (UTC) Received: from hornbill.gentoo.org (hornbill.gentoo.org [94.100.119.163]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 78ADF33E300 for ; Sun, 16 Jun 2013 20:19:03 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by hornbill.gentoo.org (Postfix) with ESMTP id 216BCE468F for ; Sun, 16 Jun 2013 20:19:02 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1371409634.fd12f80985bdcfcfe457ba734c632fb97c3375b5.jlec@gentoo> Subject: [gentoo-commits] proj/sci:fixing commit in: sci-biology/clover/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/clover/ChangeLog sci-biology/clover/clover-2010.02.19.ebuild sci-biology/clover/clover-2011.10.24.ebuild sci-biology/clover/metadata.xml X-VCS-Directories: sci-biology/clover/ X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: fd12f80985bdcfcfe457ba734c632fb97c3375b5 X-VCS-Branch: fixing Date: Sun, 16 Jun 2013 20:19:02 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 99c00ed4-faea-4031-b916-41c6aa29c7f4 X-Archives-Hash: cf28b2daf7f9041751448584b3ce96c2 commit: fd12f80985bdcfcfe457ba734c632fb97c3375b5 Author: Justin Lecher gentoo org> AuthorDate: Sun Jun 16 19:07:14 2013 +0000 Commit: Justin Lecher gentoo org> CommitDate: Sun Jun 16 19:07:14 2013 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=fd12f809 sci-biology/clover: Version BUmp; fixed license; respect LDFLAGS Package-Manager: portage-2.2.0_alpha180 --- sci-biology/clover/ChangeLog | 6 +++- sci-biology/clover/clover-2010.02.19.ebuild | 43 ----------------------------- sci-biology/clover/clover-2011.10.24.ebuild | 40 +++++++++++++++++++++++++++ sci-biology/clover/metadata.xml | 6 ++-- 4 files changed, 49 insertions(+), 46 deletions(-) diff --git a/sci-biology/clover/ChangeLog b/sci-biology/clover/ChangeLog index 18775e4..edcb8dd 100644 --- a/sci-biology/clover/ChangeLog +++ b/sci-biology/clover/ChangeLog @@ -1,7 +1,11 @@ # ChangeLog for sci-biology/clover -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 16 Jun 2013; Justin Lecher -clover-2010.02.19.ebuild, + +clover-2011.10.24.ebuild, metadata.xml: + Version BUmp; fixed license; respect LDFLAGS + *clover-2010.02.19 (23 Aug 2010) 23 Aug 2010; Andreas K. Huettel (dilfridge) diff --git a/sci-biology/clover/clover-2010.02.19.ebuild b/sci-biology/clover/clover-2010.02.19.ebuild deleted file mode 100644 index 239cc30..0000000 --- a/sci-biology/clover/clover-2010.02.19.ebuild +++ /dev/null @@ -1,43 +0,0 @@ -# Copyright 1999-2010 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -inherit toolchain-funcs versionator - -MY_PV=$(replace_all_version_separators '-') - -DESCRIPTION="Cis-eLement OVERrepresentation: Detection of functional DNA motifs" -HOMEPAGE="http://zlab.bu.edu/clover/" -SRC_URI="http://zlab.bu.edu/~mfrith/downloads/${PN}-${MY_PV}.tar.gz http://zlab.bu.edu/clover/jaspar2005core" - -LICENSE="as-is" -SLOT="0" -IUSE="" -KEYWORDS="~x86 ~amd64" - -DEPEND="" -RDEPEND="" - -S="${WORKDIR}/${PN}-${MY_PV}" - -src_unpack() { - unpack ${PN}-${MY_PV}.tar.gz -} - -src_compile() { - sed -i "s:g++:$(tc-getCXX):; s:-Wall -O3:${CFLAGS}:" Makefile || die "sed failed" - emake || die "emake failed" -} - -src_install() { - dobin clover - dodir "/usr/share/${PN}" - insinto "/usr/share/${PN}" - doins "${DISTDIR}/jaspar2005core" || die -} - -pkg_postinst() { - einfo "The motif library jaspar2005core has been installed in" - einfo " /usr/share/clover/jaspar2005core" - einfo "You can pass this library to clover for motif search, or use your own library." -} diff --git a/sci-biology/clover/clover-2011.10.24.ebuild b/sci-biology/clover/clover-2011.10.24.ebuild new file mode 100644 index 0000000..cfb0574 --- /dev/null +++ b/sci-biology/clover/clover-2011.10.24.ebuild @@ -0,0 +1,40 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit toolchain-funcs versionator + +MY_PV=$(replace_all_version_separators '-') + +DESCRIPTION="Cis-eLement OVERrepresentation: Detection of functional DNA motifs" +HOMEPAGE="http://zlab.bu.edu/clover/" +SRC_URI=" + http://zlab.bu.edu/~mfrith/downloads/${PN}-${MY_PV}.tar.gz + http://zlab.bu.edu/clover/jaspar2009core" + +LICENSE="freedist" +SLOT="0" +IUSE="" +KEYWORDS="~x86 ~amd64" + +S="${WORKDIR}/${PN}-${MY_PV}" + +src_prepare() { + sed \ + -e "s:g++:$(tc-getCXX) \$(LDFLAGS):; s:-Wall -O3:${CFLAGS}:" \ + -i Makefile || die "sed failed" +} + +src_install() { + dobin clover + insinto /usr/share/${PN} + doins "${DISTDIR}/jaspar2009core" +} + +pkg_postinst() { + einfo "The motif library jaspar2009core has been installed in" + einfo " /usr/share/clover/jaspar2009core" + einfo "You can pass this library to clover for motif search, or use your own library." +} diff --git a/sci-biology/clover/metadata.xml b/sci-biology/clover/metadata.xml index 622c9ed..fd501d2 100644 --- a/sci-biology/clover/metadata.xml +++ b/sci-biology/clover/metadata.xml @@ -1,6 +1,8 @@ -sci-biology -maintainer-wanted@gentoo.org + sci-biology + + maintainer-wanted@gentoo.org +