[gentoo-commits] proj/sci:fixing commit in: sci-biology/clover/

[gentoo-commits] proj/sci:fixing commit in: sci-biology/clover/

[Justin Lecher]

commit:     fd12f80985bdcfcfe457ba734c632fb97c3375b5
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 16 19:07:14 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jun 16 19:07:14 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=fd12f809

sci-biology/clover: Version BUmp; fixed license; respect LDFLAGS

Package-Manager: portage-2.2.0_alpha180

---
 sci-biology/clover/ChangeLog                |  6 +++-
 sci-biology/clover/clover-2010.02.19.ebuild | 43 -----------------------------
 sci-biology/clover/clover-2011.10.24.ebuild | 40 +++++++++++++++++++++++++++
 sci-biology/clover/metadata.xml             |  6 ++--
 4 files changed, 49 insertions(+), 46 deletions(-)

diff --git a/sci-biology/clover/ChangeLog b/sci-biology/clover/ChangeLog
index 18775e4..edcb8dd 100644
--- a/sci-biology/clover/ChangeLog
+++ b/sci-biology/clover/ChangeLog
@@ -1,7 +1,11 @@
 # ChangeLog for sci-biology/clover
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  16 Jun 2013; Justin Lecher <jlec@gentoo.org> -clover-2010.02.19.ebuild,
+  +clover-2011.10.24.ebuild, metadata.xml:
+  Version BUmp; fixed license; respect LDFLAGS
+
 *clover-2010.02.19 (23 Aug 2010)
 
   23 Aug 2010; Andreas K. Huettel (dilfridge) <mail@akhuettel.de>

diff --git a/sci-biology/clover/clover-2010.02.19.ebuild b/sci-biology/clover/clover-2010.02.19.ebuild
deleted file mode 100644
index 239cc30..0000000
--- a/sci-biology/clover/clover-2010.02.19.ebuild
+++ /dev/null
@@ -1,43 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit toolchain-funcs versionator
-
-MY_PV=$(replace_all_version_separators '-')
-
-DESCRIPTION="Cis-eLement OVERrepresentation: Detection of functional DNA motifs"
-HOMEPAGE="http://zlab.bu.edu/clover/"
-SRC_URI="http://zlab.bu.edu/~mfrith/downloads/${PN}-${MY_PV}.tar.gz http://zlab.bu.edu/clover/jaspar2005core"
-
-LICENSE="as-is"
-SLOT="0"
-IUSE=""
-KEYWORDS="~x86 ~amd64"
-
-DEPEND=""
-RDEPEND=""
-
-S="${WORKDIR}/${PN}-${MY_PV}"
-
-src_unpack() {
-	unpack ${PN}-${MY_PV}.tar.gz
-}
-
-src_compile() {
-	sed -i "s:g++:$(tc-getCXX):; s:-Wall -O3:${CFLAGS}:" Makefile || die "sed failed"
-	emake || die "emake failed"
-}
-
-src_install() {
-	dobin clover
-	dodir "/usr/share/${PN}"
-	insinto "/usr/share/${PN}"
-	doins "${DISTDIR}/jaspar2005core" || die
-}
-
-pkg_postinst() {
-	einfo "The motif library jaspar2005core has been installed in"
-	einfo "    /usr/share/clover/jaspar2005core"
-	einfo "You can pass this library to clover for motif search, or use your own library."
-}

diff --git a/sci-biology/clover/clover-2011.10.24.ebuild b/sci-biology/clover/clover-2011.10.24.ebuild
new file mode 100644
index 0000000..cfb0574
--- /dev/null
+++ b/sci-biology/clover/clover-2011.10.24.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit toolchain-funcs versionator
+
+MY_PV=$(replace_all_version_separators '-')
+
+DESCRIPTION="Cis-eLement OVERrepresentation: Detection of functional DNA motifs"
+HOMEPAGE="http://zlab.bu.edu/clover/"
+SRC_URI="
+	http://zlab.bu.edu/~mfrith/downloads/${PN}-${MY_PV}.tar.gz
+	http://zlab.bu.edu/clover/jaspar2009core"
+
+LICENSE="freedist"
+SLOT="0"
+IUSE=""
+KEYWORDS="~x86 ~amd64"
+
+S="${WORKDIR}/${PN}-${MY_PV}"
+
+src_prepare() {
+	sed \
+		-e "s:g++:$(tc-getCXX) \$(LDFLAGS):; s:-Wall -O3:${CFLAGS}:" \
+		-i Makefile || die "sed failed"
+}
+
+src_install() {
+	dobin clover
+	insinto /usr/share/${PN}
+	doins "${DISTDIR}/jaspar2009core"
+}
+
+pkg_postinst() {
+	einfo "The motif library jaspar2009core has been installed in"
+	einfo "    /usr/share/clover/jaspar2009core"
+	einfo "You can pass this library to clover for motif search, or use your own library."
+}

diff --git a/sci-biology/clover/metadata.xml b/sci-biology/clover/metadata.xml
index 622c9ed..fd501d2 100644
--- a/sci-biology/clover/metadata.xml
+++ b/sci-biology/clover/metadata.xml
@@ -1,6 +1,8 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<herd>sci-biology</herd>
-<maintainer><email>maintainer-wanted@gentoo.org</email></maintainer>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>maintainer-wanted@gentoo.org</email>
+  </maintainer>
 </pkgmetadata>