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* [gentoo-commits] proj/sci:master commit in: sci-chemistry/shiftx2/
@ 2013-06-16 17:23 Justin Lecher
  0 siblings, 0 replies; 8+ messages in thread
From: Justin Lecher @ 2013-06-16 17:23 UTC (permalink / raw
  To: gentoo-commits

commit:     e17ee503d9a4754bb8ee8b04f65d48404b731264
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 16 14:23:05 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jun 16 14:23:05 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e17ee503

broken ebuild for java fixing
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

---
 sci-chemistry/shiftx2/metadata.xml                 | 28 ++++++++
 .../shiftx2/shiftx2-1.07_p20120106.ebuild          | 74 ++++++++++++++++++++++
 2 files changed, 102 insertions(+)

diff --git a/sci-chemistry/shiftx2/metadata.xml b/sci-chemistry/shiftx2/metadata.xml
new file mode 100644
index 0000000..8fb55f2
--- /dev/null
+++ b/sci-chemistry/shiftx2/metadata.xml
@@ -0,0 +1,28 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<longdescription>
+  SHIFTX2 predicts both the backbone and side chain 1H, 13C and 15N chemical 
+  shifts for proteins using their structural (PDB) coordinates as input. 
+  SHIFTX2 combines ensemble machine learning methods with sequence 
+  alignment-based methods to calculate protein chemical shifts for backbone 
+  and side chain atoms. SHIFTX2 has been trained on a carefully selected set of 
+  197 proteins and tested on a separate set of 61 proteins. Both the training 
+  and testing sets consisted of high resolution X-ray structures (less 2.1A) 
+  with carefully verified chemical shifts assignments. SHIFTX2 is able to attain
+  correlation coefficients between experimentally observed and predicted 
+  backbone chemical shifts of 0.9800 (15N), 0.9959 (13CA), 0.9992 (13CB),
+  0.9676 (13CO), 0.9714 (1HN), 0.9744 (1HA) and RMS errors of 1.1169, 0.4412,
+  0.5163, 0.5330, 0.1711, and 0.1231 ppm, respectively. Comparisons to other 
+  chemical shift predictors using the same testing data set indicates that 
+  SHIFTX2 is substantially more accurate (up to 26% better by correlation 
+  coefficient with an RMS error that is up to 3.3X smaller) than any other 
+  program. 
+
+  Please cite the following: Beomsoo Han, Yifeng Liu, Simon Ginzinger, and 
+  David Wishart. (2011) SHIFTX2: significantly improved protein chemical shift 
+  prediction. Journal of Biomolecular NMR, Volume 50, Number 1, 43-57. 
+  doi: 10.1007/s10858-011-9478-4. 
+</longdescription>
+</pkgmetadata>

diff --git a/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild b/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild
new file mode 100644
index 0000000..b13677b
--- /dev/null
+++ b/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild
@@ -0,0 +1,74 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_6,2_7} )
+
+inherit java-pkg-2 java-pkg-simple python-r1 versionator
+
+MY_PV="$(delete_all_version_separators $(get_version_component_range 1-2))"
+MY_PATCH="20120106"
+MY_P="${PN}-v${MY_PV}-linux"
+
+DESCRIPTION="Predicts both the backbone and side chain 1H, 13C and 15N chemical shifts for proteins"
+HOMEPAGE="http://shiftx2.wishartlab.com/"
+SRC_URI="http://shiftx2.wishartlab.com/download/${MY_P}-${MY_PATCH}.tgz"
+
+SLOT="0"
+LICENSE="all-rights-reserved"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+CDEPEND="dev-util/weka"
+
+RDEPEND="${CDEPEND}
+	dev-lang/R
+	>=virtual/jre-1.5"
+DEPEND="${CDEPEND}
+	>=virtual/jdk-1.5"
+
+S="${WORKDIR}"/${MY_P}
+
+src_compile() {
+	mkdir "${S}"/build || die
+	ejavac -classpath "$(java-pkg_getjars weka)" -nowarn -d "${S}"/build $(find src/ -name "*.java")
+	jar cf "${PN}.jar" -C "${S}"/build . || die
+	ejavac -cp $(java-pkg_getjars weka):. -Xlint ShiftXp.java
+
+
+	cd "${S}"/modules/angles || die
+	emake clean
+	emake CFLAGS="${CFLAGS}" GCC=$(tc-getCC) LINK="${LDFLAGS}" get_angles phipsi
+
+}
+
+src_install() {
+	java-pkg_dolauncher ${PN} --main "ShiftXp"
+
+
+	local instdir="/opt/${PN}"
+	dodoc README 1UBQ.pdb
+	python_parallel_foreach_impl python_doscript *py
+
+	# modules/angles
+	cd "${S}"/modules/angles || die
+	dobin get_angles phipsi
+
+
+	# script
+	python_scriptinto ${instdir}/script
+	python_parallel_foreach_impl python_doscript script/*py
+	exeinto ${instdir}/script
+	doexe script/*.r
+
+
+	# shifty3
+	insinto ${instdir}
+	doins -r shifty3
+	python_scriptinto ${instdir}/shifty3
+	python_parallel_foreach_impl python_doscript shifty3/*py
+	exeinto ${instdir}/shifty3
+	doexe shifty3/xalign_x
+}


^ permalink raw reply related	[flat|nested] 8+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/shiftx2/
@ 2013-06-16 17:23 Justin Lecher
  0 siblings, 0 replies; 8+ messages in thread
From: Justin Lecher @ 2013-06-16 17:23 UTC (permalink / raw
  To: gentoo-commits

commit:     70c6bdd6914374ca8b505c4c843955e8289394d2
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 16 17:22:08 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jun 16 17:22:08 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=70c6bdd6

sci-chemistry/shiftx2: Respect FLAGS

Package-Manager: portage-2.2.0_alpha180

---
 sci-chemistry/shiftx2/ChangeLog                    |  8 ++++++++
 sci-chemistry/shiftx2/metadata.xml                 | 10 +++++-----
 .../shiftx2/shiftx2-1.07_p20120106.ebuild          | 22 +++++++++++++++-------
 3 files changed, 28 insertions(+), 12 deletions(-)

diff --git a/sci-chemistry/shiftx2/ChangeLog b/sci-chemistry/shiftx2/ChangeLog
new file mode 100644
index 0000000..5aafaf3
--- /dev/null
+++ b/sci-chemistry/shiftx2/ChangeLog
@@ -0,0 +1,8 @@
+# ChangeLog for sci-chemistry/shiftx2
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+  16 Jun 2013; Justin Lecher <jlec@gentoo.org> shiftx2-1.07_p20120106.ebuild,
+  metadata.xml:
+  Respect FLAGS
+

diff --git a/sci-chemistry/shiftx2/metadata.xml b/sci-chemistry/shiftx2/metadata.xml
index 947e346..80444f4 100644
--- a/sci-chemistry/shiftx2/metadata.xml
+++ b/sci-chemistry/shiftx2/metadata.xml
@@ -1,8 +1,8 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-	<herd>sci</herd>
-	<longdescription>
+  <herd>sci</herd>
+  <longdescription>
 		SHIFTX2 predicts both the backbone and side chain 1H, 13C and 15N chemical
 		shifts for proteins using their structural (PDB) coordinates as input.
 		SHIFTX2 combines ensemble machine learning methods with sequence
@@ -33,7 +33,7 @@
 		prediction. Journal of Biomolecular NMR, Volume 50, Number 1, 43-57.
 		doi: 10.1007/s10858-011-9478-4.
 	</longdescription>
-	<use>
-		<flag name='debug'>Enables debug output in the shiftx2 java part</flag>
-	</use>
+  <use>
+    <flag name="debug">Enables debug output in the shiftx2 java part</flag>
+  </use>
 </pkgmetadata>

diff --git a/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild b/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild
index e9cb4c7..5a19e4b 100644
--- a/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild
+++ b/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild
@@ -25,12 +25,15 @@ CDEPEND="dev-util/weka"
 
 RDEPEND="${CDEPEND}
 	dev-lang/R
+	sci-chemistry/reduce
 	>=virtual/jre-1.5"
 DEPEND="${CDEPEND}
 	>=virtual/jdk-1.5"
 
 S="${WORKDIR}"/${MY_P}
 
+QA_PREBUILT="/opt/.*"
+
 src_prepare() {
 	epatch "${FILESDIR}/gentoo-fixes.patch"
 	rm "${S}"/src/FeatureRanges.java || die
@@ -43,7 +46,12 @@ src_prepare() {
 	fi
 
 	# hack alert!
-	sed '/-o/s:$: -lm:g' -i "${S}/modules/resmf/Makefile" || die
+	sed \
+		-e '/-o/s:$(GCC):$(GCC) $(LDFLAGS):g' \
+		-e '/-o/s:$(CC):$(CC) $(LDFLAGS):g' \
+		-i modules/*/Makefile || die
+
+	sed -e '/-o/s:$: -lm:g' -i "${S}/modules/resmf/Makefile" || die
 }
 
 src_compile() {
@@ -65,7 +73,7 @@ src_compile() {
 	einfo "Building module effects"
 	cd "${S}"/modules/effects || die
 	emake clean
-	emake CFLAGS="${CFLAGS}" GCC=$(tc-getCC) LINK="${LDFLAGS}" all
+	emake CFLAGS="${CFLAGS}" CC=$(tc-getCC) LINK="${LDFLAGS}" all
 }
 
 src_install() {
@@ -83,12 +91,11 @@ src_install() {
 	dodoc README 1UBQ.pdb
 	python_parallel_foreach_impl python_doscript "${S}"/*py
 
-	# modules/angles
-	cd "${S}"/modules/angles || die
-	dobin get_angles phipsi
-
 	# other modules
-	dobin "${S}"/modules/resmf/resmf "${S}"/modules/effects/caleffect
+	dobin \
+		"${S}"/modules/angles/{get_angles,phipsi} \
+		"${S}"/modules/resmf/resmf \
+		"${S}"/modules/effects/caleffect
 
 	# script
 	python_scriptinto ${instdir}/script
@@ -101,4 +108,5 @@ src_install() {
 	python_parallel_foreach_impl python_doscript "${S}"/shifty3/*py
 	exeinto ${instdir}/shifty3
 	doexe "${S}"/shifty3/xalign_x
+	dosym ../${PN}/shifty3/xalign_x /opt/bin/xalign_x
 }


^ permalink raw reply related	[flat|nested] 8+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/shiftx2/
@ 2013-10-15 17:17 Justin Lecher
  0 siblings, 0 replies; 8+ messages in thread
From: Justin Lecher @ 2013-10-15 17:17 UTC (permalink / raw
  To: gentoo-commits

commit:     da3421952980483a25a3250c434b3c7ab5f9df36
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Oct 15 13:31:11 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Oct 15 17:17:08 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=da342195

sci-chemistry/shiftx2: Add missing PYTHON_DEPS and PYTHON_REQUIRED_USE

Package-Manager: portage-2.2.7

---
 sci-chemistry/shiftx2/ChangeLog                     | 3 +++
 sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild | 4 +++-
 2 files changed, 6 insertions(+), 1 deletion(-)

diff --git a/sci-chemistry/shiftx2/ChangeLog b/sci-chemistry/shiftx2/ChangeLog
index 572650b..9bbb954 100644
--- a/sci-chemistry/shiftx2/ChangeLog
+++ b/sci-chemistry/shiftx2/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  15 Oct 2013; Justin Lecher <jlec@gentoo.org> shiftx2-1.07_p20120106.ebuild:
+  Add missing PYTHON_DEPS and PYTHON_REQUIRED_USE
+
   21 Jun 2013; johann@j-schmitz.net files/shiftx2-1.07_p20120106-java.patch,
   files/shiftx2-1.07_p20120106-system.patch:
   Completly removed the directory check in the java source (we have everything

diff --git a/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild b/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild
index 01ebe04..405e75e 100644
--- a/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild
+++ b/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild
@@ -21,7 +21,9 @@ LICENSE="all-rights-reserved"
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 IUSE="debug"
 
-CDEPEND="dev-util/weka"
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+
+CDEPEND="dev-util/weka ${PYTHON_DEPS}"
 
 RDEPEND="${CDEPEND}
 	dev-lang/R


^ permalink raw reply related	[flat|nested] 8+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/shiftx2/
@ 2013-10-16  4:49 Nicolas Bock
  0 siblings, 0 replies; 8+ messages in thread
From: Nicolas Bock @ 2013-10-16  4:49 UTC (permalink / raw
  To: gentoo-commits

commit:     7cb3e5f7575ac1dbd5e06d8d9ba764fb7b606854
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Oct 15 13:31:11 2013 +0000
Commit:     Nicolas Bock <nicolasbock <AT> gmail <DOT> com>
CommitDate: Tue Oct 15 13:31:11 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7cb3e5f7

sci-chemistry/shiftx2: Add missing PYTHON_DEPS and PYTHON_REQUIRED_USE

Package-Manager: portage-2.2.7

---
 sci-chemistry/shiftx2/ChangeLog                     | 3 +++
 sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild | 4 +++-
 2 files changed, 6 insertions(+), 1 deletion(-)

diff --git a/sci-chemistry/shiftx2/ChangeLog b/sci-chemistry/shiftx2/ChangeLog
index 572650b..9bbb954 100644
--- a/sci-chemistry/shiftx2/ChangeLog
+++ b/sci-chemistry/shiftx2/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  15 Oct 2013; Justin Lecher <jlec@gentoo.org> shiftx2-1.07_p20120106.ebuild:
+  Add missing PYTHON_DEPS and PYTHON_REQUIRED_USE
+
   21 Jun 2013; johann@j-schmitz.net files/shiftx2-1.07_p20120106-java.patch,
   files/shiftx2-1.07_p20120106-system.patch:
   Completly removed the directory check in the java source (we have everything

diff --git a/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild b/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild
index 01ebe04..405e75e 100644
--- a/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild
+++ b/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild
@@ -21,7 +21,9 @@ LICENSE="all-rights-reserved"
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 IUSE="debug"
 
-CDEPEND="dev-util/weka"
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+
+CDEPEND="dev-util/weka ${PYTHON_DEPS}"
 
 RDEPEND="${CDEPEND}
 	dev-lang/R


^ permalink raw reply related	[flat|nested] 8+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/shiftx2/
@ 2013-10-16  6:30 Justin Lecher
  0 siblings, 0 replies; 8+ messages in thread
From: Justin Lecher @ 2013-10-16  6:30 UTC (permalink / raw
  To: gentoo-commits

commit:     eb1079711e4f060e5756cd2b0853c93a228d2da2
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Oct 15 09:35:24 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Oct 16 06:30:45 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=eb107971

sci-chemistry/shiftx2: Add missing python-r1 stuff

Package-Manager: portage-2.2.7

---
 sci-chemistry/shiftx2/ChangeLog | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/shiftx2/ChangeLog b/sci-chemistry/shiftx2/ChangeLog
index 9bbb954..e43499b 100644
--- a/sci-chemistry/shiftx2/ChangeLog
+++ b/sci-chemistry/shiftx2/ChangeLog
@@ -3,7 +3,7 @@
 # $Header: $
 
   15 Oct 2013; Justin Lecher <jlec@gentoo.org> shiftx2-1.07_p20120106.ebuild:
-  Add missing PYTHON_DEPS and PYTHON_REQUIRED_USE
+  Add missing python-r1 stuff
 
   21 Jun 2013; johann@j-schmitz.net files/shiftx2-1.07_p20120106-java.patch,
   files/shiftx2-1.07_p20120106-system.patch:


^ permalink raw reply related	[flat|nested] 8+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/shiftx2/
@ 2013-10-23  6:42 Justin Lecher
  0 siblings, 0 replies; 8+ messages in thread
From: Justin Lecher @ 2013-10-23  6:42 UTC (permalink / raw
  To: gentoo-commits

commit:     a75b0fbfcc09b31c70ee0c161e621895c666ba51
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Oct 23 06:41:58 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Oct 23 06:41:58 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a75b0fbf

sci-chemistry/shiftx2: Add missing PYTHON_DEPS

Package-Manager: portage-2.2.7

---
 sci-chemistry/shiftx2/ChangeLog                     | 3 +++
 sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild | 1 +
 2 files changed, 4 insertions(+)

diff --git a/sci-chemistry/shiftx2/ChangeLog b/sci-chemistry/shiftx2/ChangeLog
index e43499b..df92dab 100644
--- a/sci-chemistry/shiftx2/ChangeLog
+++ b/sci-chemistry/shiftx2/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  23 Oct 2013; Justin Lecher <jlec@gentoo.org> shiftx2-1.07_p20120106.ebuild:
+  Add missing PYTHON_DEPS
+
   15 Oct 2013; Justin Lecher <jlec@gentoo.org> shiftx2-1.07_p20120106.ebuild:
   Add missing python-r1 stuff
 

diff --git a/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild b/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild
index 405e75e..9d85635 100644
--- a/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild
+++ b/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild
@@ -26,6 +26,7 @@ REQUIRED_USE="${PYTHON_REQUIRED_USE}"
 CDEPEND="dev-util/weka ${PYTHON_DEPS}"
 
 RDEPEND="${CDEPEND}
+	${PYTHON_DEPS}
 	dev-lang/R
 	sci-biology/ncbi-tools
 	sci-chemistry/reduce


^ permalink raw reply related	[flat|nested] 8+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/shiftx2/
@ 2014-03-20  9:04 Justin Lecher
  0 siblings, 0 replies; 8+ messages in thread
From: Justin Lecher @ 2014-03-20  9:04 UTC (permalink / raw
  To: gentoo-commits

commit:     e4ee47d7762e1772e11c941b69744af1c045ab0a
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Mar 19 07:12:03 2014 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Mar 20 05:16:33 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e4ee47d7

sci-chemistry/shiftx2: Drop python2.6 support

Package-Manager: portage-2.2.8-r1

---
 sci-chemistry/shiftx2/ChangeLog                     | 5 ++++-
 sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild | 2 +-
 2 files changed, 5 insertions(+), 2 deletions(-)

diff --git a/sci-chemistry/shiftx2/ChangeLog b/sci-chemistry/shiftx2/ChangeLog
index df92dab..0b7f87e 100644
--- a/sci-chemistry/shiftx2/ChangeLog
+++ b/sci-chemistry/shiftx2/ChangeLog
@@ -1,7 +1,10 @@
 # ChangeLog for sci-chemistry/shiftx2
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  19 Mar 2014; Justin Lecher <jlec@gentoo.org> shiftx2-1.07_p20120106.ebuild:
+  Drop python2.6 support
+
   23 Oct 2013; Justin Lecher <jlec@gentoo.org> shiftx2-1.07_p20120106.ebuild:
   Add missing PYTHON_DEPS
 

diff --git a/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild b/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild
index 36c17b3..4f2a51e 100644
--- a/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild
+++ b/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild
@@ -4,7 +4,7 @@
 
 EAPI=5
 
-PYTHON_COMPAT=( python{2_6,2_7} )
+PYTHON_COMPAT=( python2_7 )
 
 inherit java-pkg-2 java-pkg-simple prefix python-r1 versionator
 


^ permalink raw reply related	[flat|nested] 8+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/shiftx2/
@ 2014-03-22  9:45 Justin Lecher
  0 siblings, 0 replies; 8+ messages in thread
From: Justin Lecher @ 2014-03-22  9:45 UTC (permalink / raw
  To: gentoo-commits

commit:     a503b90879e968ff83381f1a7e16021f2e2c885a
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Mar 19 07:12:03 2014 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Mar 22 09:44:40 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a503b908

sci-chemistry/shiftx2: Drop python2.6 support

Package-Manager: portage-2.2.8-r1

---
 sci-chemistry/shiftx2/ChangeLog                     | 5 ++++-
 sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild | 2 +-
 2 files changed, 5 insertions(+), 2 deletions(-)

diff --git a/sci-chemistry/shiftx2/ChangeLog b/sci-chemistry/shiftx2/ChangeLog
index df92dab..0b7f87e 100644
--- a/sci-chemistry/shiftx2/ChangeLog
+++ b/sci-chemistry/shiftx2/ChangeLog
@@ -1,7 +1,10 @@
 # ChangeLog for sci-chemistry/shiftx2
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  19 Mar 2014; Justin Lecher <jlec@gentoo.org> shiftx2-1.07_p20120106.ebuild:
+  Drop python2.6 support
+
   23 Oct 2013; Justin Lecher <jlec@gentoo.org> shiftx2-1.07_p20120106.ebuild:
   Add missing PYTHON_DEPS
 

diff --git a/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild b/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild
index 36c17b3..4f2a51e 100644
--- a/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild
+++ b/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild
@@ -4,7 +4,7 @@
 
 EAPI=5
 
-PYTHON_COMPAT=( python{2_6,2_7} )
+PYTHON_COMPAT=( python2_7 )
 
 inherit java-pkg-2 java-pkg-simple prefix python-r1 versionator
 


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2013-06-16 17:23 [gentoo-commits] proj/sci:master commit in: sci-chemistry/shiftx2/ Justin Lecher
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2014-03-22  9:45 Justin Lecher
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2013-10-23  6:42 Justin Lecher
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2013-10-16  4:49 Nicolas Bock
2013-10-15 17:17 Justin Lecher
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