* [gentoo-commits] proj/sci:master commit in: sci-chemistry/shiftx/
@ 2013-06-16 15:53 Justin Lecher
0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher @ 2013-06-16 15:53 UTC (permalink / raw
To: gentoo-commits
commit: 54c8c9253776bf41414c7b0ed390f80c95b5a88b
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 16 13:32:56 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jun 16 13:32:56 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=54c8c925
sci-chemistry/shiftx: Bump to EAPI=5 and fix license
Package-Manager: portage-2.2.0_alpha180
---
sci-chemistry/shiftx/ChangeLog | 5 ++++-
sci-chemistry/shiftx/metadata.xml | 8 ++++----
sci-chemistry/shiftx/shiftx-1.1.ebuild | 24 +++++++++++-------------
3 files changed, 19 insertions(+), 18 deletions(-)
diff --git a/sci-chemistry/shiftx/ChangeLog b/sci-chemistry/shiftx/ChangeLog
index 3284d50..e588d4f 100644
--- a/sci-chemistry/shiftx/ChangeLog
+++ b/sci-chemistry/shiftx/ChangeLog
@@ -1,7 +1,10 @@
# ChangeLog for sci-chemistry/shiftx
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 16 Jun 2013; Justin Lecher <jlec@gentoo.org> shiftx-1.1.ebuild, metadata.xml:
+ Bump to EAPI=5 and fix license
+
*shiftx-1.1 (14 Jun 2009)
14 Jun 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
diff --git a/sci-chemistry/shiftx/metadata.xml b/sci-chemistry/shiftx/metadata.xml
index 0fbe927..d410f15 100644
--- a/sci-chemistry/shiftx/metadata.xml
+++ b/sci-chemistry/shiftx/metadata.xml
@@ -1,8 +1,8 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
-<herd>sci-chemistry</herd>
-<maintainer>
- <email>sci@gentoo.org</email>
-</maintainer>
+ <herd>sci-chemistry</herd>
+ <maintainer>
+ <email>sci@gentoo.org</email>
+ </maintainer>
</pkgmetadata>
diff --git a/sci-chemistry/shiftx/shiftx-1.1.ebuild b/sci-chemistry/shiftx/shiftx-1.1.ebuild
index 336c77c..5f26ed3 100644
--- a/sci-chemistry/shiftx/shiftx-1.1.ebuild
+++ b/sci-chemistry/shiftx/shiftx-1.1.ebuild
@@ -1,33 +1,31 @@
-# Copyright 1999-2009 Gentoo Foundation
+# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
+EAPI=5
+
inherit base toolchain-funcs
-DESCRIPTION="With this form you can predict 1H, 13C and 15N chemical shifts for your favorite protein"
-HOMEPAGE="http://redpoll.pharmacy.ualberta.ca/shiftx/"
-SRC_URI="http://redpoll.pharmacy.ualberta.ca/download/${PN}/${PN}.tar.gz"
+DESCRIPTION="Prediction of 1H, 13C and 15N chemical shifts for proteins"
+HOMEPAGE="http://shiftx.wishartlab.com/"
+SRC_URI="http://shiftx.wishartlab.com/download/${PN}.tar.gz -> ${P}.tar.gz"
-LICENSE="as-is"
+LICENSE="all-rights-reserved"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
S="${WORKDIR}"/${PN}
-PATCHES=(
- "${FILESDIR}"/${PV}-Makefile.patch
-)
+PATCHES=( "${FILESDIR}"/${PV}-Makefile.patch )
DOCS="README FEATURES *.pdb *.out"
src_compile() {
- emake \
- CC="$(tc-getCC)" || \
- die "compilation failed"
+ emake CC="$(tc-getCC)"
}
src_install() {
- dobin ${PN} || die "installationof ${PN} failed"
- dodoc ${DOCS} || die
+ dobin ${PN}
+ dodoc ${DOCS}
}
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/shiftx/
@ 2013-06-21 20:30 Nicolas Bock
0 siblings, 0 replies; 3+ messages in thread
From: Nicolas Bock @ 2013-06-21 20:30 UTC (permalink / raw
To: gentoo-commits
commit: 01c472c800a1e8218bccaf3cfd0a830e0c88ba28
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Jun 21 07:04:22 2013 +0000
Commit: Nicolas Bock <nicolasbock <AT> gmail <DOT> com>
CommitDate: Fri Jun 21 07:04:22 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=01c472c8
sci-chemistry/shiftx: Block shiftx2 at runtime
Package-Manager: portage-2.2.0_alpha183
---
sci-chemistry/shiftx/ChangeLog | 3 +++
sci-chemistry/shiftx/shiftx-1.1.ebuild | 3 +++
2 files changed, 6 insertions(+)
diff --git a/sci-chemistry/shiftx/ChangeLog b/sci-chemistry/shiftx/ChangeLog
index 85e5049..f656301 100644
--- a/sci-chemistry/shiftx/ChangeLog
+++ b/sci-chemistry/shiftx/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 21 Jun 2013; Justin Lecher <jlec@gentoo.org> shiftx-1.1.ebuild:
+ Block shiftx2 at runtime
+
20 Jun 2013; Justin Lecher <jlec@gentoo.org> shiftx-1.1.ebuild,
files/1.1-Makefile.patch, +files/1.1-bfr-overflow.patch, metadata.xml:
Fix patch and add patch for buffer overflow fix
diff --git a/sci-chemistry/shiftx/shiftx-1.1.ebuild b/sci-chemistry/shiftx/shiftx-1.1.ebuild
index 5d3cc0f..4c3c6b7 100644
--- a/sci-chemistry/shiftx/shiftx-1.1.ebuild
+++ b/sci-chemistry/shiftx/shiftx-1.1.ebuild
@@ -17,6 +17,9 @@ IUSE=""
S="${WORKDIR}"/${PN}
+DEPEND=""
+RDEPEND="sci-chemistry/shiftx2"
+
PATCHES=(
"${FILESDIR}"/${PV}-Makefile.patch
"${FILESDIR}"/${PV}-bfr-overflow.patch )
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/shiftx/
@ 2014-01-06 18:33 Justin Lecher
0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher @ 2014-01-06 18:33 UTC (permalink / raw
To: gentoo-commits
commit: 9cbd900fbd19b0308812f9f7cdcf254587611ec8
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Jan 6 17:52:30 2014 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jan 6 17:52:30 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=9cbd900f
sci-chemistry/shiftx: Punt base.eclass
Package-Manager: portage-2.2.8
---
sci-chemistry/shiftx/ChangeLog | 5 ++++-
sci-chemistry/shiftx/shiftx-1.1.ebuild | 16 +++++++++-------
2 files changed, 13 insertions(+), 8 deletions(-)
diff --git a/sci-chemistry/shiftx/ChangeLog b/sci-chemistry/shiftx/ChangeLog
index f656301..b61600c 100644
--- a/sci-chemistry/shiftx/ChangeLog
+++ b/sci-chemistry/shiftx/ChangeLog
@@ -1,7 +1,10 @@
# ChangeLog for sci-chemistry/shiftx
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 06 Jan 2014; Justin Lecher <jlec@gentoo.org> shiftx-1.1.ebuild:
+ Punt base.eclass
+
21 Jun 2013; Justin Lecher <jlec@gentoo.org> shiftx-1.1.ebuild:
Block shiftx2 at runtime
diff --git a/sci-chemistry/shiftx/shiftx-1.1.ebuild b/sci-chemistry/shiftx/shiftx-1.1.ebuild
index 4c3c6b7..d336ee1 100644
--- a/sci-chemistry/shiftx/shiftx-1.1.ebuild
+++ b/sci-chemistry/shiftx/shiftx-1.1.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2013 Gentoo Foundation
+# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
EAPI=5
-inherit base toolchain-funcs
+inherit eutils toolchain-funcs
DESCRIPTION="Prediction of 1H, 13C and 15N chemical shifts for proteins"
HOMEPAGE="http://shiftx.wishartlab.com/"
@@ -15,17 +15,19 @@ SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
-S="${WORKDIR}"/${PN}
-
DEPEND=""
RDEPEND="sci-chemistry/shiftx2"
-PATCHES=(
- "${FILESDIR}"/${PV}-Makefile.patch
- "${FILESDIR}"/${PV}-bfr-overflow.patch )
+S="${WORKDIR}"/${PN}
DOCS="README FEATURES *.pdb *.out"
+src_prepare() {
+ epatch \
+ "${FILESDIR}"/${PV}-Makefile.patch \
+ "${FILESDIR}"/${PV}-bfr-overflow.patch
+}
+
src_compile() {
emake CC="$(tc-getCC)"
}
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