From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id ED9D61381F3 for ; Fri, 14 Jun 2013 11:21:41 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 5FAF0E0888; Fri, 14 Jun 2013 11:21:33 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id BDC32E086E for ; Fri, 14 Jun 2013 11:21:32 +0000 (UTC) Received: from hornbill.gentoo.org (hornbill.gentoo.org [94.100.119.163]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id A91E133DF3D for ; Fri, 14 Jun 2013 11:21:31 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by hornbill.gentoo.org (Postfix) with ESMTP id 3CCABE468F for ; Fri, 14 Jun 2013 11:21:30 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1371190073.3c71e81e85316ad2d2bcaf502153541cb9e6c865.jlec@gentoo> Subject: [gentoo-commits] proj/sci:ccp4 commit in: / X-VCS-Repository: proj/sci X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: 3c71e81e85316ad2d2bcaf502153541cb9e6c865 X-VCS-Branch: ccp4 Date: Fri, 14 Jun 2013 11:21:30 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: d4fce96e-d1c2-42c4-b5c1-536fc78e6b22 X-Archives-Hash: 7d7d68754b910f94dd8e29eb9afe1439 commit: 3c71e81e85316ad2d2bcaf502153541cb9e6c865 Author: Justin Lecher gentoo org> AuthorDate: Fri Jun 14 06:07:53 2013 +0000 Commit: Justin Lecher gentoo org> CommitDate: Fri Jun 14 06:07:53 2013 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3c71e81e Merge branch 'master' into ccp4 * master: sci-astronomy/astrometry: Version bump. Rewrote the patches manifests fixes mpe2: main tree more up to date dev-python/go-parser: Bump to EAPI=5 and distutils-r1.eclass dev-python/fiat: Version Bump; Bump to EAPI=5 and distutils-r1.eclass dev-python/coords: Bump to EAPI=5 and distutils-r1.eclass dev-python/ffc: Version Bump; Bump to EAPI=5 and distutils-r1.eclass dev-python/emcee: Version Bump; Bump to EAPI=5 and distutils-r1.eclass Obsolete package Signed-off-by: Justin Lecher gentoo.org> dev-python/dimensionful: Bump to EAPI=5 and distutils-r1.eclass dev-python/cosmocalc: Bump to EAPI=5 and distutils-r1.eclass dev-python/coards: VersionBump; Bump to EAPI=5 and distutils-r1.eclass; fix license dev-python/astropy: Bump to EAPI=5 and distutils-r1.eclass dev-python/GOGrapher: Bump to EAPI=5 and distutils-r1.eclass dev-python/GOGrapher: Bump to EAPI=5 and distutils-r1.eclass dev-python/GOGrapher: Bump to EAPI=5 and distutils-r1.eclass app-benchmarks/numbench: Bump to EAPI=5 and distutils-r1.eclass dev-python/astropysics: Bump to EAPI=5 and distutils-r1.eclass app-doc/blacs-docs/Manifest | 2 +- app-doc/blas-docs/Manifest | 6 +- app-doc/lapack-docs/Manifest | 4 +- app-doc/root-docs/Manifest | 5 - app-text/dgs/Manifest | 2 +- app-vim/freefem++-syntax/Manifest | 2 +- dev-cpp/growler-arch/Manifest | 4 +- dev-cpp/growler-core/Manifest | 2 +- dev-cpp/growler-math/Manifest | 2 +- dev-cpp/growler-thread/Manifest | 2 +- dev-java/jeuclid-core/Manifest | 2 +- dev-java/joda-convert/Manifest | 2 +- dev-java/vecmath/Manifest | 4 +- dev-libs/libunzip/Manifest | 2 +- dev-libs/simclist/Manifest | 5 +- dev-ml/mlgmpidl/Manifest | 6 +- dev-ml/ocamlgraph/Manifest | 4 - dev-perl/BTLib/Manifest | 2 +- dev-perl/Lab-Instrument/Manifest | 2 +- dev-perl/Lab-Tools/Manifest | 2 +- dev-perl/Lab-VISA/Manifest | 2 +- dev-perl/go-db-perl/Manifest | 2 +- dev-perl/opal-client/Manifest | 2 +- dev-python/coards/ChangeLog | 8 +- dev-python/coards/Manifest | 2 +- dev-python/coards/coards-0.2.2.ebuild | 22 - dev-python/coards/coards-1.0.5.ebuild | 23 + dev-python/coards/metadata.xml | 10 +- dev-python/coords/ChangeLog | 6 +- dev-python/coords/Manifest | 2 +- dev-python/coords/coords-0.37.ebuild | 22 +- dev-python/coords/metadata.xml | 4 +- dev-python/cosmocalc/ChangeLog | 6 +- dev-python/cosmocalc/Manifest | 2 +- dev-python/cosmocalc/cosmocalc-0.1.2-r1.ebuild | 23 +- dev-python/cosmocalc/metadata.xml | 4 +- dev-python/dimensionful/ChangeLog | 6 +- dev-python/dimensionful/dimensionful-9999.ebuild | 37 +- dev-python/dimensionful/metadata.xml | 8 +- dev-python/emcee/ChangeLog | 8 +- dev-python/emcee/Manifest | 2 +- dev-python/emcee/emcee-1.0.1.ebuild | 35 - dev-python/emcee/emcee-1.2.0.ebuild | 27 + dev-python/emcee/metadata.xml | 4 +- dev-python/ffc/ChangeLog | 8 +- dev-python/ffc/Manifest | 2 +- dev-python/ffc/ffc-0.9.4.ebuild | 23 - dev-python/ffc/ffc-1.2.0.ebuild | 18 + dev-python/ffc/metadata.xml | 4 +- dev-python/fiat/ChangeLog | 8 +- dev-python/fiat/Manifest | 2 +- .../fiat/{fiat-0.9.2.ebuild => fiat-1.1.ebuild} | 14 +- dev-python/fiat/metadata.xml | 4 +- dev-python/go-parser/ChangeLog | 6 +- dev-python/go-parser/Manifest | 2 +- dev-python/go-parser/go-parser-9999.ebuild | 13 +- dev-python/go-parser/metadata.xml | 10 +- dev-python/instant/Manifest | 2 +- dev-python/meshpy/Manifest | 2 +- dev-python/numpydoc/Manifest | 2 +- dev-python/omniorbpy/Manifest | 2 +- dev-python/opal-client/Manifest | 2 +- dev-python/pyhdf/Manifest | 2 +- dev-python/pythoncgns/Manifest | 2 +- dev-python/ufl/Manifest | 2 +- dev-python/viper/Manifest | 2 +- dev-tcltk/togl/Manifest | 2 +- dev-util/smartgit/Manifest | 2 +- media-libs/OpenMOIV/Manifest | 2 +- media-libs/avbin-bin/Manifest | 4 +- media-libs/libgfx/Manifest | 2 +- net-firewall/gcb/Manifest | 2 +- net-ftp/bbftp-client/Manifest | 2 +- net-ftp/bbftp-server/Manifest | 2 +- net-misc/bbscp/Manifest | 2 +- net-misc/dhcp/ChangeLog | 61 -- net-misc/dhcp/Manifest | 1 - net-misc/dhcp/dhcp-4.2.3_p2-r1.ebuild | 245 ------- net-misc/dhcp/files/dhcp-3.0-fix-perms.patch | 15 - net-misc/dhcp/files/dhcp-3.0.3-dhclient-dbus.patch | 84 --- .../dhcp/files/dhcp-3.0.3-dhclient-no-down.patch | 70 -- net-misc/dhcp/files/dhcp-4.0-dhclient-ntp.patch | 216 ------- net-misc/dhcp/files/dhcp-4.2.0-PPP.patch | 150 ----- .../dhcp/files/dhcp-4.2.0-errwarn-message.patch | 31 - .../dhcp/files/dhcp-4.2.2-bind-build-flags.patch | 14 - net-misc/dhcp/files/dhcp-4.2.2-bind-disable.patch | 13 - .../files/dhcp-4.2.2-bind-parallel-build.patch | 14 - .../files/dhcp-4.2.2-dhclient-resolvconf.patch | 409 ------------ .../files/dhcp-4.2.2-dhclient-stdin-conf.patch | 113 ---- net-misc/dhcp/files/dhcp-4.2.2-gpxe-cid.patch | 132 ---- net-misc/dhcp/files/dhcp-4.2.2-improved-xid.patch | 138 ---- net-misc/dhcp/files/dhcp-4.2.2-lpf-ib.patch | 538 ---------------- net-misc/dhcp/files/dhcp-4.2.2-nogateway.patch | 46 -- net-misc/dhcp/files/dhcp-4.2.2-xen-checksum.patch | 249 -------- net-misc/dhcp/files/dhcp-4.2.3-options.patch | 391 ------------ net-misc/dhcp/files/dhcpd.conf2 | 28 - net-misc/dhcp/files/dhcpd.init2 | 94 --- net-misc/dhcp/files/dhcpd.init5 | 114 ---- net-misc/dhcp/files/dhcrelay.conf | 13 - net-misc/dhcp/files/dhcrelay.init2 | 29 - net-misc/dhcp/metadata.xml | 10 - perl-core/encoding-warnings/Manifest | 2 +- sci-astronomy/astrometry/ChangeLog | 12 +- sci-astronomy/astrometry/Manifest | 2 +- sci-astronomy/astrometry/astrometry-0.38.ebuild | 57 -- sci-astronomy/astrometry/astrometry-0.43.ebuild | 71 +++ .../astrometry/files/0.38-array-bounds.patch | 11 - .../astrometry/files/0.38-as-needed.patch | 694 -------------------- .../astrometry/files/0.38-missing-headers.patch | 11 - .../astrometry/files/0.38-strict-aliasing.patch | 30 - .../astrometry/files/0.38-system-libs.patch | 48 -- .../astrometry/files/0.43-as-needed.patch | 366 +++++++++++ ...r-flags.patch => 0.43-respect-user-flags.patch} | 3 + .../astrometry/files/0.43-system-libs.patch | 704 +++++++++++++++++++++ sci-astronomy/astrometry/metadata.xml | 4 +- sci-biology/ONTO-PERL/Manifest | 2 +- sci-biology/align_to_scf/Manifest | 2 +- sci-biology/amos-short/Manifest | 2 +- sci-biology/argo-bin/Manifest | 2 +- sci-biology/argo/Manifest | 2 +- sci-biology/autoeditor/Manifest | 4 +- sci-biology/bambus/Manifest | 2 +- sci-biology/brat/Manifest | 2 +- sci-biology/caftools/Manifest | 4 +- sci-biology/cap3-bin/Manifest | 4 +- sci-biology/cdbfasta/Manifest | 2 +- sci-biology/clover/Manifest | 4 +- sci-biology/clview/Manifest | 4 +- sci-biology/codonw/Manifest | 2 +- sci-biology/dawg/Manifest | 2 +- sci-biology/embassy-cbstools/Manifest | 2 +- sci-biology/embassy-domainatrix/Manifest | 2 +- sci-biology/embassy-domalign/Manifest | 2 +- sci-biology/embassy-domsearch/Manifest | 2 +- sci-biology/embassy-emnu/Manifest | 2 +- sci-biology/embassy-esim4/Manifest | 2 +- sci-biology/embassy-hmmer/Manifest | 2 +- sci-biology/embassy-iprscan/Manifest | 2 +- sci-biology/embassy-mse/Manifest | 2 +- sci-biology/embassy-phylipnew/Manifest | 2 +- sci-biology/embassy-signature/Manifest | 2 +- sci-biology/embassy-structure/Manifest | 2 +- sci-biology/embassy-topo/Manifest | 2 +- sci-biology/embassy-vienna/Manifest | 2 +- sci-biology/erpin/Manifest | 4 +- sci-biology/est2uni/Manifest | 10 +- sci-biology/fastdnaml/Manifest | 4 +- sci-biology/gap2caf/Manifest | 4 +- sci-biology/gbench/Manifest | 2 +- sci-biology/genepop/Manifest | 2 +- sci-biology/generecon/Manifest | 2 +- sci-biology/genseed/Manifest | 2 +- sci-biology/grappa/Manifest | 2 +- sci-biology/jalview/Manifest | 2 +- sci-biology/lucy/Manifest | 2 +- sci-biology/mavid/Manifest | 2 +- sci-biology/merlin/Manifest | 2 +- sci-biology/miranda/Manifest | 2 +- sci-biology/mrbayes/Manifest | 2 +- sci-biology/mreps/Manifest | 2 +- sci-biology/mrfast/Manifest | 2 +- sci-biology/mrsfast/Manifest | 2 +- sci-biology/nrcl/Manifest | 4 +- sci-biology/perlprimer/Manifest | 2 +- sci-biology/proda/Manifest | 2 +- sci-biology/psx/Manifest | 2 +- sci-biology/quicktree/Manifest | 2 +- sci-biology/rnaplex/Manifest | 2 +- sci-biology/roche454ace2caf/Manifest | 2 +- sci-biology/sclust/Manifest | 4 +- sci-biology/sequin/Manifest | 4 +- sci-biology/sff_dump/Manifest | 2 +- sci-biology/signalp/Manifest | 2 +- sci-biology/smalt-bin/Manifest | 2 +- sci-biology/ssaha2-bin/Manifest | 10 +- sci-biology/swissknife/Manifest | 2 +- sci-biology/tablet-bin/Manifest | 2 +- sci-biology/tclust/Manifest | 4 +- sci-biology/tgicl/Manifest | 2 +- sci-biology/tigr-assembler/Manifest | 2 +- sci-biology/tigr-foundation-libs/Manifest | 2 +- sci-biology/tmhmm/Manifest | 2 +- sci-biology/twinscan/Manifest | 2 +- sci-biology/zmsort/Manifest | 4 +- sci-chemistry/almost/Manifest | 2 +- sci-chemistry/bist/Manifest | 2 +- sci-chemistry/cnsface/Manifest | 2 +- sci-chemistry/direx/Manifest | 2 +- sci-chemistry/drawxtl/Manifest | 4 +- sci-chemistry/dssp2pdb/Manifest | 2 +- sci-chemistry/jana2000/Manifest | 2 +- sci-chemistry/jmol/Manifest | 2 +- sci-chemistry/mage/Manifest | 2 +- sci-chemistry/modeller/Manifest | 2 +- sci-chemistry/mtz2hkl/Manifest | 2 +- sci-chemistry/mtz2sca/Manifest | 2 +- sci-chemistry/phaser/Manifest | 2 +- sci-chemistry/polygon/Manifest | 4 +- sci-chemistry/pyquante/Manifest | 2 +- sci-chemistry/rosetta-tools/Manifest | 2 +- sci-chemistry/shiftx/Manifest | 2 +- sci-chemistry/smmp/Manifest | 2 +- sci-chemistry/unio/Manifest | 4 +- sci-electronics/player/Manifest | 2 +- sci-electronics/stage/Manifest | 2 +- sci-electronics/tnt/Manifest | 2 +- sci-geosciences/cdat-lite/Manifest | 4 +- sci-geosciences/congen/Manifest | 2 +- .../harmonics-dwf-free-noncomm/Manifest | 2 +- sci-geosciences/harmonics-dwf-free/Manifest | 4 +- sci-geosciences/libtcd/Manifest | 4 +- sci-geosciences/seawater/Manifest | 2 +- sci-geosciences/swmm/Manifest | 2 +- sci-geosciences/tappy/Manifest | 2 +- sci-geosciences/tcd-utils/Manifest | 4 +- sci-geosciences/xtide/Manifest | 4 +- sci-libs/calculix-cgx/Manifest | 4 +- sci-libs/cgnsfoam/Manifest | 2 +- sci-libs/cgnslib/Manifest | 2 +- sci-libs/cnsface-scripts/Manifest | 2 +- sci-libs/dcmtk/Manifest | 6 +- sci-libs/driftwood/Manifest | 2 +- sci-libs/etsf_io/Manifest | 2 +- sci-libs/factory/Manifest | 2 +- sci-libs/fgsl/Manifest | 4 +- sci-libs/fox/Manifest | 12 +- sci-libs/fplll/Manifest | 2 +- sci-libs/framewave/Manifest | 2 +- sci-libs/geom/Manifest | 2 +- sci-libs/givaro/Manifest | 4 +- sci-libs/libcgnsoo/Manifest | 2 +- sci-libs/libfac/Manifest | 4 +- sci-libs/libxc/Manifest | 2 +- sci-libs/lwpr/Manifest | 2 +- sci-libs/m4ri/Manifest | 4 +- sci-libs/matio/Manifest | 2 +- sci-libs/mesquite/Manifest | 2 +- sci-libs/ni-visa/Manifest | 2 +- sci-libs/oasa/Manifest | 2 +- sci-libs/omalloc/Manifest | 2 +- sci-libs/symmetrica/Manifest | 2 +- sci-libs/trilinos/Manifest | 1 + sci-libs/trilinos/metadata.xml | 56 +- sci-mathematics/Oid/Manifest | 4 +- sci-mathematics/acl2/Manifest | 2 +- sci-mathematics/apron/Manifest | 5 +- sci-mathematics/aribas/Manifest | 2 +- sci-mathematics/axiom/Manifest | 2 +- sci-mathematics/burrtools/Manifest | 4 +- sci-mathematics/dolfin/Manifest | 2 +- sci-mathematics/frama-c/Manifest | 3 - sci-mathematics/gap-guava/Manifest | 2 +- sci-mathematics/gap/Manifest | 4 +- sci-mathematics/gappa/Manifest | 3 - sci-mathematics/htk/Manifest | 4 +- sci-mathematics/kayali/Manifest | 2 +- sci-mathematics/libsfmt/Manifest | 2 +- sci-mathematics/lie/Manifest | 2 +- sci-mathematics/ltl2ba/Manifest | 25 +- sci-mathematics/netgen/Manifest | 2 +- sci-mathematics/open-axiom/Manifest | 2 +- sci-mathematics/pest/Manifest | 6 +- sci-mathematics/ufc/Manifest | 2 +- sci-misc/finomaton/Manifest | 2 +- sci-misc/fitscut/Manifest | 2 +- sci-misc/jwnl/Manifest | 4 +- sci-misc/kotus-sanalista/Manifest | 2 +- sci-misc/nltk/Manifest | 2 +- sci-misc/omorfi/Manifest | 2 +- sci-misc/opennlp-maxent/Manifest | 2 +- sci-misc/opennlp-tools/Manifest | 88 +-- sci-misc/pywordnet/Manifest | 2 +- sci-misc/salome-kernel/Manifest | 4 +- sci-misc/salome-pycalculator/Manifest | 4 +- sci-misc/stanford-parser/Manifest | 2 +- sci-misc/stanford-tagger/Manifest | 2 +- sci-physics/qcl/Manifest | 8 +- sci-visualization/nodemon/Manifest | 2 +- sys-cluster/condor/ChangeLog | 40 -- sys-cluster/condor/Manifest | 2 - sys-cluster/condor/condor-7.5.2.ebuild | 160 ----- sys-cluster/condor/condor-7.5.4.ebuild | 160 ----- sys-cluster/condor/files/condor.confd | 2 - sys-cluster/condor/files/condor.initd | 64 -- sys-cluster/condor/files/condor_config.local | 11 - sys-cluster/condor/metadata.xml | 26 - sys-cluster/ganglia_jobmonarch/Manifest | 2 +- sys-cluster/mpe2/ChangeLog | 15 - sys-cluster/mpe2/Manifest | 1 - .../files/slog2sdk-trace_rlog-makefile-fixes.patch | 68 -- .../slog2sdk-trace_sample-makefile-fixes.patch | 68 -- sys-cluster/mpe2/metadata.xml | 10 - sys-cluster/mpe2/mpe2-1.0.6_p1.ebuild | 148 ----- sys-cluster/nullmpi/Manifest | 2 +- sys-cluster/pyslice/Manifest | 2 +- sys-devel/gdebugger/Manifest | 4 +- sys-infiniband/librxe/Manifest | 2 +- x11-libs/tr/Manifest | 2 +- 298 files changed, 1674 insertions(+), 5428 deletions(-)