[gentoo-commits] proj/sci:master commit in: sci-libs/blastdb/

[gentoo-commits] proj/sci:master commit in: sci-libs/blastdb/

[Justin Lecher]

commit:     ae26e49fc86c49c69aa59c1c4ada411decc77cba
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Jun 13 06:25:35 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Jun 13 06:25:35 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=ae26e49f

sci-libs/blastdb: Add missing build dep; fix license

Package-Manager: portage-2.2.0_alpha179

---
 sci-libs/blastdb/ChangeLog           |  8 ++++++++
 sci-libs/blastdb/blastdb-9999.ebuild |  8 ++++----
 sci-libs/blastdb/metadata.xml        | 31 +------------------------------
 3 files changed, 13 insertions(+), 34 deletions(-)

diff --git a/sci-libs/blastdb/ChangeLog b/sci-libs/blastdb/ChangeLog
new file mode 100644
index 0000000..99ad4d7
--- /dev/null
+++ b/sci-libs/blastdb/ChangeLog
@@ -0,0 +1,8 @@
+# ChangeLog for sci-libs/blastdb
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+  13 Jun 2013; Justin Lecher <jlec@gentoo.org> blastdb-9999.ebuild,
+  metadata.xml:
+  Add missing build dep; fix license
+

diff --git a/sci-libs/blastdb/blastdb-9999.ebuild b/sci-libs/blastdb/blastdb-9999.ebuild
index 18d29af..58372a4 100644
--- a/sci-libs/blastdb/blastdb-9999.ebuild
+++ b/sci-libs/blastdb/blastdb-9999.ebuild
@@ -4,19 +4,19 @@
 
 EAPI=5
 
-# inherit
-
 DESCRIPTION="The BLAST NR database"
 HOMEPAGE="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=ProgSelectionGuide"
 SRC_URI=""
 
 SLOT="0"
-LICENSE="alrights-resevered"
+LICENSE="all-rights-reserved"
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 IUSE=""
 
 RDEPEND=""
-DEPEND="${RDEPEND}"
+DEPEND="sci-biology/ncbi-tools++"
+
+RESTRICT="binchecks strip"
 
 src_unpack() {
 	if [[ -n ${ESLEEP} ]]; then

diff --git a/sci-libs/blastdb/metadata.xml b/sci-libs/blastdb/metadata.xml
index 4dcddcb..897aa2e 100644
--- a/sci-libs/blastdb/metadata.xml
+++ b/sci-libs/blastdb/metadata.xml
@@ -1,34 +1,5 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<!--
-$Header: /var/cvsroot/gentoo-x86/skel.metadata.xml,v 1.21 2012/02/07 00:03:15 idl0r Exp $
-
-This is the example metadata file.
-The root element of this file is <pkgmetadata>. Within this element a
-number of subelements are allowed: herd, maintainer, and
-longdescription. herd is a required subelement.
-
-For a full description look at:
-http://www.gentoo.org/proj/en/devrel/handbook/handbook.xml?part=2&chap=4
-
-
-Before committing, please remove the comments from this file. They are
-not relevant for general metadata.xml files.
--->
 <pkgmetadata>
-	<herd>sci</herd>
-<maintainer>
-	<email>@gentoo.org</email>
-<!--  <description>Description of the maintainership</description> -->
-</maintainer>
-<!-- <longdescription>Long description of the package</longdescription> -->
-<!--
-<use>
-	<flag name="flag">Description of how USE='flag' affects this package</flag>
-	<flag name="userland_GNU">Description of how USERLAND='GNU' affects this
-		package</flag>
-	<flag name="aspell">Uses <pkg>app-text/aspell</pkg> for spell checking.
-		Requires an installed dictionary from <cat>app-dicts</cat></flag>
-</use>
--->
+  <herd>sci</herd>
 </pkgmetadata>

[gentoo-commits] proj/sci:master commit in: sci-libs/blastdb/

[Andrew Ammerlaan]

commit:     c45a703692585f333b35a9aab281a60a216cf50d
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Thu Feb  4 08:09:27 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Thu Feb  4 08:09:27 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=c45a7036

sci-libs/blastdb: remove empty pack

only pulls in ncbi-tools++ and updates the blastdb
nothing depends on this, hasn't been touched since 2014

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-libs/blastdb/blastdb-9999.ebuild | 26 --------------------------
 sci-libs/blastdb/metadata.xml        |  8 --------
 2 files changed, 34 deletions(-)

diff --git a/sci-libs/blastdb/blastdb-9999.ebuild b/sci-libs/blastdb/blastdb-9999.ebuild
deleted file mode 100644
index 4165929f4..000000000
--- a/sci-libs/blastdb/blastdb-9999.ebuild
+++ /dev/null
@@ -1,26 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-DESCRIPTION="The BLAST NR database"
-HOMEPAGE="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=ProgSelectionGuide"
-SRC_URI=""
-
-SLOT="0"
-LICENSE="all-rights-reserved"
-KEYWORDS=""
-IUSE=""
-
-RDEPEND=""
-DEPEND="sci-biology/ncbi-tools++"
-
-RESTRICT="binchecks strip"
-
-src_unpack() {
-	if [[ -n ${ESLEEP} ]]; then
-		elog "Will sleep for ${ESLEEP}"
-		sleep ${ESLEEP}
-	fi
-	update_blastdb.pl --verbose --verbose --decompress nr || die
-}

diff --git a/sci-libs/blastdb/metadata.xml b/sci-libs/blastdb/metadata.xml
deleted file mode 100644
index ae9640ffb..000000000
--- a/sci-libs/blastdb/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="project">
-		<email>sci@gentoo.org</email>
-		<name>Gentoo Science Project</name>
-	</maintainer>
-</pkgmetadata>