* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2012-12-12 9:23 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2012-12-12 9:23 UTC (permalink / raw
To: gentoo-commits
commit: 37e60011545e1c93774198df085dc88a5dcdfcc3
Author: Justin <jlec <AT> j-schmitz <DOT> net>
AuthorDate: Mon Dec 10 14:43:58 2012 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Dec 10 14:43:58 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=37e60011
Merge pull request #36 from TheChymera/master
Live ebuild for pybrain
.../pybrain/metadata.xml | 0
sci-biology/pybrain/pybrain-9999.ebuild | 25 ++++++++++++++++++++
2 files changed, 25 insertions(+), 0 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2012-12-10 14:47 [gentoo-commits] proj/sci:master " Justin Lecher
@ 2012-12-12 9:23 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2012-12-12 9:23 UTC (permalink / raw
To: gentoo-commits
commit: abec81ec27eb8b7a07dba4c8772c85804cf5b1f9
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Dec 10 14:45:48 2012 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Dec 10 14:45:48 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=abec81ec
Merge branch 'master' of github.com:gentoo-science/sci
# By TheChymera
# Via Justin (1) and TheChymera (1)
* 'master' of github.com:gentoo-science/sci:
ran repoman -vdx fix as per jlec'S recommendation
Added live ebuild for pybrain
.../pybrain/metadata.xml | 0
sci-biology/pybrain/pybrain-9999.ebuild | 25 ++++++++++++++++++++
2 files changed, 25 insertions(+), 0 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2012-12-12 9:23 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2012-12-12 9:23 UTC (permalink / raw
To: gentoo-commits
commit: 87b28664cc5e4dfee010012bafca333f580a0b99
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Dec 10 14:48:36 2012 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Dec 10 14:48:36 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=87b28664
Merge branch 'master' into ccp4
* master:
sci-biology/pybrain: Drop comments from metadata.xml; drop keywords from live ebuild
ran repoman -vdx fix as per jlec'S recommendation
Added live ebuild for pybrain
sci-biology/pybrain/ChangeLog | 8 ++++++
.../omniorbpy => sci-biology/pybrain}/metadata.xml | 0
sci-biology/pybrain/pybrain-9999.ebuild | 25 ++++++++++++++++++++
3 files changed, 33 insertions(+), 0 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-05-30 10:31 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: 6d23e13180fb3099af32a680e3a94a26d53a7160
Author: Andreas Schäfer <gentryx <AT> gmx <DOT> de>
AuthorDate: Wed Apr 24 11:49:52 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Apr 24 11:49:52 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=6d23e131
Merge branch 'master' of https://github.com/gentoo-science/sci
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sci-mathematics/polymake/polymake-2.11-r1.ebuild | 4 +-
sci-mathematics/rstudio/ChangeLog | 19 -
sci-mathematics/rstudio/Manifest | 7 -
.../rstudio/files/rstudio-0.97.237-prefs.patch | 20 -
.../rstudio/files/rstudio-linker_flags.patch | 13 -
sci-mathematics/rstudio/files/rstudio-paths.patch | 106 -
sci-mathematics/rstudio/files/rstudio-prefs.patch | 20 -
.../rstudio/files/rstudio-rserver.initd | 15 -
.../rstudio/files/rstudio.desktop.patch | 16 -
sci-mathematics/rstudio/metadata.xml | 13 -
sci-mathematics/rstudio/rstudio-0.96.316.ebuild | 141 -
sci-mathematics/rstudio/rstudio-0.96.331.ebuild | 141 -
sci-mathematics/rstudio/rstudio-0.97.237.ebuild | 139 -
sci-mathematics/scilab/ChangeLog | 6 +-
sci-mathematics/scilab/metadata.xml | 16 +-
sci-mathematics/scilab/scilab-5.3.3-r1.ebuild | 26 +-
sci-mathematics/scilab/scilab-5.4.0.ebuild | 19 +-
sci-mathematics/surfer/ChangeLog | 6 +-
sci-mathematics/surfer/Manifest | 2 +-
sci-mathematics/surfer/metadata.xml | 2 +-
sci-mathematics/surfer/surfer-0.0.197.ebuild | 21 +-
sci-mathematics/why/ChangeLog | 5 +-
sci-mathematics/why/Manifest | 6 +-
sci-mathematics/why/metadata.xml | 26 +-
sci-mathematics/why/why-2.30.ebuild | 74 +-
sci-mathematics/yorick/ChangeLog | 6 +-
sci-mathematics/yorick/Manifest | 2 +-
sci-mathematics/yorick/metadata.xml | 12 +-
sci-mathematics/yorick/yorick-2.1.06.ebuild | 29 +-
sci-misc/foma/ChangeLog | 6 +-
sci-misc/foma/foma-0.9.14_alpha.ebuild | 4 +-
sci-misc/foma/foma-0.9.16_alpha.ebuild | 4 +-
sci-misc/foma/metadata.xml | 6 +-
sci-misc/hfst/ChangeLog | 6 +-
sci-misc/hfst/hfst-3.0.2.ebuild | 4 +-
sci-misc/hfst/hfst-3.3.12.ebuild | 6 +-
sci-misc/hfst/metadata.xml | 16 +-
sci-misc/openfst/ChangeLog | 6 +-
sci-misc/openfst/metadata.xml | 6 +-
sci-misc/openfst/openfst-1.2.7.ebuild | 4 +-
sci-misc/openfst/openfst-1.3.2.ebuild | 4 +-
sci-misc/praat/ChangeLog | 6 +-
sci-misc/praat/Manifest | 4 +-
sci-misc/praat/metadata.xml | 8 +-
sci-misc/praat/praat-5.1.00.ebuild | 23 +-
sci-misc/praat/praat-5.1.15.ebuild | 23 +-
sci-misc/salome-component/ChangeLog | 6 +-
sci-misc/salome-component/Manifest | 4 +-
sci-misc/salome-component/metadata.xml | 2 +-
.../salome-component/salome-component-5.1.3.ebuild | 8 +-
.../salome-component/salome-component-5.1.4.ebuild | 8 +-
sci-misc/salome-geom/ChangeLog | 6 +-
sci-misc/salome-geom/Manifest | 4 +-
sci-misc/salome-geom/metadata.xml | 2 +-
sci-misc/salome-geom/salome-geom-5.1.3.ebuild | 10 +-
sci-misc/salome-geom/salome-geom-5.1.4.ebuild | 10 +-
sci-misc/salome-gui/ChangeLog | 6 +-
sci-misc/salome-gui/Manifest | 4 +-
sci-misc/salome-gui/metadata.xml | 2 +-
sci-misc/salome-gui/salome-gui-5.1.3.ebuild | 10 +-
sci-misc/salome-gui/salome-gui-5.1.4.ebuild | 10 +-
sci-misc/salome-med/ChangeLog | 6 +-
sci-misc/salome-med/Manifest | 4 +-
sci-misc/salome-med/metadata.xml | 10 +-
sci-misc/salome-med/salome-med-5.1.3.ebuild | 8 +-
sci-misc/salome-med/salome-med-5.1.4.ebuild | 8 +-
sci-misc/salome-smesh/ChangeLog | 6 +-
sci-misc/salome-smesh/Manifest | 4 +-
sci-misc/salome-smesh/metadata.xml | 2 +-
sci-misc/salome-smesh/salome-smesh-5.1.3.ebuild | 8 +-
sci-misc/salome-smesh/salome-smesh-5.1.4.ebuild | 8 +-
sci-misc/salome-visu/ChangeLog | 6 +-
sci-misc/salome-visu/Manifest | 4 +-
sci-misc/salome-visu/metadata.xml | 2 +-
sci-misc/salome-visu/salome-visu-5.1.3.ebuild | 8 +-
sci-misc/salome-visu/salome-visu-5.1.4.ebuild | 8 +-
sci-misc/salome-yacs/ChangeLog | 6 +-
sci-misc/salome-yacs/Manifest | 4 +-
sci-misc/salome-yacs/metadata.xml | 2 +-
sci-misc/salome-yacs/salome-yacs-5.1.3.ebuild | 8 +-
sci-misc/salome-yacs/salome-yacs-5.1.4.ebuild | 8 +-
sci-misc/sfst/ChangeLog | 6 +-
sci-misc/sfst/metadata.xml | 10 +-
sci-misc/sfst/sfst-1.4.2.ebuild | 4 +-
sci-misc/sfst/sfst-1.4.6g.ebuild | 4 +-
sci-physics/abinit/ChangeLog | 13 +
sci-physics/abinit/Manifest | 2 +-
sci-physics/abinit/abinit-7.0.4.ebuild | 27 +-
...abinit-6.12.3-r2.ebuild => abinit-7.0.5.ebuild} | 63 +-
sci-physics/abinit/metadata.xml | 74 +-
sci-physics/atompaw/ChangeLog | 5 +
sci-physics/atompaw/atompaw-3.0.1.9.ebuild | 14 +-
sci-physics/atompaw/metadata.xml | 14 +-
sci-physics/atompaw2abinit/ChangeLog | 7 +-
sci-physics/atompaw2abinit/Manifest | 2 +-
.../atompaw2abinit/atompaw2abinit-3.3.0-r1.ebuild | 19 +-
sci-physics/atompaw2abinit/metadata.xml | 8 +-
sci-physics/elk/ChangeLog | 6 +-
sci-physics/elk/elk-1.4.22.ebuild | 92 +-
sci-physics/elk/metadata.xml | 10 +-
sci-physics/espresso/ChangeLog | 5 +-
sci-physics/espresso/espresso-9999.ebuild | 14 +-
sci-physics/herwig++/ChangeLog | 7 +
sci-physics/herwig++/Manifest | 2 +-
...ptools.patch => herwig++-2.6.3-looptools.patch} | 0
...herwig++-2.6.2.ebuild => herwig++-2.6.3.ebuild} | 2 +-
sci-physics/openmx/ChangeLog | 8 +
.../phenix-bin => sci-physics/openmx}/metadata.xml | 0
sci-physics/openmx/openmx-3.6.ebuild | 42 +-
sci-physics/root/ChangeLog | 10 +
sci-physics/root/Manifest | 4 +-
.../root/files/root-5.34.05-nobyte-compile.patch | 137 +
sci-physics/root/metadata.xml | 38 +-
.../{root-5.34.03.ebuild => root-5.34.05.ebuild} | 19 +-
sci-physics/root/root-9999.ebuild | 12 +-
sci-physics/thepeg/ChangeLog | 7 +
sci-physics/thepeg/Manifest | 6 +-
...eg-1.8.2-java.patch => thepeg-1.8.3-java.patch} | 0
.../{thepeg-1.8.2.ebuild => thepeg-1.8.3.ebuild} | 2 +-
sci-visualization/ferret-bin/ChangeLog | 7 +-
sci-visualization/ferret-bin/Manifest | 10 +-
.../ferret-bin/ferret-bin-6.6.4.ebuild | 52 +-
sci-visualization/ferret-bin/metadata.xml | 12 +-
sci-visualization/gnuplot/ChangeLog | 18 +-
sci-visualization/gnuplot/gnuplot-4.6.9999.ebuild | 213 +-
sci-visualization/gnuplot/gnuplot-4.7.9999.ebuild | 202 +-
sci-visualization/gnuplot/metadata.xml | 26 +-
sci-visualization/paraview/ChangeLog | 6 +-
sci-visualization/paraview/metadata.xml | 36 +-
sci-visualization/paraview/paraview-3.10.1.ebuild | 28 +-
sci-visualization/paraview/paraview-3.12.0.ebuild | 26 +-
.../paraview/paraview-3.14.1-r4.ebuild | 16 +-
sci-visualization/v_sim/ChangeLog | 6 +-
sci-visualization/v_sim/Manifest | 4 +-
sci-visualization/v_sim/metadata.xml | 26 +-
sci-visualization/v_sim/v_sim-3.5.1.ebuild | 80 -
sci-visualization/v_sim/v_sim-3.5.2.ebuild | 87 -
sci-visualization/v_sim/v_sim-3.6.0.ebuild | 4 +-
sci-visualization/yt/yt-9999.ebuild | 3 +-
skel.ChangeLog | 8022 +++++++
sys-cluster/blcr/ChangeLog | 5 +-
sys-cluster/blcr/blcr-0.8.4.ebuild | 3 +-
sys-cluster/blcr/metadata.xml | 4 +-
sys-cluster/empi/ChangeLog | 10 +-
.../empi/{empi-0.7.ebuild => empi-0.8.ebuild} | 2 +-
sys-cluster/empi/files/ChangeLog-0.7 | 164 -
sys-cluster/empi/files/ChangeLog-0.8 | 68 +
sys-cluster/empi/files/empi-0.7 | 408 -
sys-cluster/empi/files/empi-0.8 | 492 +
.../files/{eselect.mpi-0.7 => eselect.mpi-0.8} | 2 +-
sys-cluster/hpl/ChangeLog | 9 +-
sys-cluster/hpl/Manifest | 2 +-
sys-cluster/hpl/hpl-2.0-r1.ebuild | 20 +-
sys-cluster/hpl/metadata.xml | 12 +-
sys-cluster/lustre/ChangeLog | 333 +
...ld-make-AC-check-for-linux-arch-sandbox-f.patch | 95 +
...rnel-3.0-SuSE-and-3.6-FC18-server-patches.patch | 21302 +++++++++++++++++++
...nel-sock_map_fd-replaced-by-sock_alloc_fi.patch | 137 +
...6-kernel-Kernel-update-for-3.7.2-201.fc18.patch | 184 +
...pat-posix_acl_-to-from-_xattr-take-user_n.patch | 159 +
...006-LU-2800-llite-introduce-local-getname.patch | 91 +
.../files/0007-LU-2987-llite-rcu-free-inode.patch | 89 +
...50-kernel-3.8-upstream-removes-vmtruncate.patch | 83 +
...-2850-kernel-3.8-upstream-kills-daemonize.patch | 2966 +++
...rnel-3.9-hlist_for_each_entry-uses-3-args.patch | 115 +
...79-kernel-f_vfsmnt-replaced-by-f_path.mnt.patch | 82 +
...fids-fix-compilation-error-with-gcc-4.7.2.patch | 29 +
...7-build-zfs-0.6.1-kmod-dkms-compatibility.patch | 1038 +
sys-cluster/lustre/lustre-9999.ebuild | 94 +-
sys-cluster/lustre/metadata.xml | 3 +
sys-cluster/mvapich2/ChangeLog | 7 +
sys-cluster/mvapich2/Manifest | 2 +-
sys-cluster/mvapich2/mvapich2-1.6-r1.ebuild | 4 +-
sys-cluster/openmpi/ChangeLog | 6 +
sys-cluster/openmpi/Manifest | 2 +-
.../{openmpi-1.6.3.ebuild => openmpi-1.6.4.ebuild} | 7 +-
sys-cluster/ovis/ChangeLog | 5 +-
sys-cluster/ovis/metadata.xml | 10 +-
sys-cluster/ovis/ovis-3.0.1.ebuild | 6 +-
virtual/blas/ChangeLog | 2 +-
virtual/lapack/ChangeLog | 8 +-
virtual/lapack/lapack-3.3.ebuild | 23 -
virtual/lapack/lapack-3.4.ebuild | 23 +
virtual/lapack/metadata.xml | 3 +-
virtual/scalapack/ChangeLog | 9 +-
virtual/scalapack/metadata.xml | 4 +-
.../{scalapack-1.8.ebuild => scalapack-2.0.ebuild} | 6 +-
x11-libs/xview-bin/ChangeLog | 9 +-
x11-libs/xview-bin/Manifest | 2 +-
x11-libs/xview-bin/metadata.xml | 10 +-
x11-libs/xview-bin/xview-bin-3.2_p1428.ebuild | 6 +-
x11-libs/xview/ChangeLog | 12 +-
x11-libs/xview/Manifest | 1 +
x11-libs/xview/metadata.xml | 10 +-
x11-libs/xview/xview-3.2-r6.ebuild | 4 +-
x11-libs/xview/xview-3.2-r7.ebuild | 4 +-
.../{xview-3.2-r7.ebuild => xview-3.2-r8.ebuild} | 8 +-
894 files changed, 42959 insertions(+), 9213 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-05-30 10:31 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: 5421e4619f5a5b5ff44341a896e4924ae7162470
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Apr 24 05:57:39 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Apr 24 05:57:39 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5421e461
Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
* 'master' of git+ssh://git.overlays.gentoo.org/proj/sci:
dev-java/jlatexmath-fop version bump
dev-java/jlatexmath version bump
dev-java/xmlgraphics-commons import new version from bugzilla
dev-java/flexdock version bump
dev-java/scirenderer version bump
Add rebased patches
dev-java/flexdock/Manifest | 2 +-
....2-nodemo.patch => flexdock-1.2.3-nodemo.patch} | 0
...flexdock-1.2.2.ebuild => flexdock-1.2.3.ebuild} | 8 +--
dev-java/jlatexmath-fop/Manifest | 3 +-
.../files/jlatexmath-fop-1.0.2-fixpaths.patch | 13 +++++
dev-java/jlatexmath-fop/files/version.xml | 5 ++
.../jlatexmath-fop/jlatexmath-fop-0.9.7.ebuild | 52 -------------------
.../jlatexmath-fop/jlatexmath-fop-1.0.0.ebuild | 52 -------------------
.../jlatexmath-fop/jlatexmath-fop-1.0.2.ebuild | 45 +++++++++++++++++
dev-java/jlatexmath/Manifest | 3 +-
dev-java/jlatexmath/jlatexmath-1.0.0.ebuild | 32 ------------
...exmath-0.9.7.ebuild => jlatexmath-1.0.2.ebuild} | 22 ++++----
dev-java/scirenderer/Manifest | 2 +-
...derer-1.0.5.ebuild => scirenderer-1.1.0.ebuild} | 4 +-
dev-java/xmlgraphics-commons/Manifest | 1 +
.../files/disable-iccprofile-test.patch | 38 ++++++++++++++
.../{jrosetta => xmlgraphics-commons}/metadata.xml | 1 -
.../xmlgraphics-commons-1.5.ebuild | 58 ++++++++++++++++++++++
sys-cluster/lustre/ChangeLog | 19 +++++++
...ld-make-AC-check-for-linux-arch-sandbox-f.patch | 2 +-
...rnel-3.0-SuSE-and-3.6-FC18-server-patches.patch | 2 +-
...nel-sock_map_fd-replaced-by-sock_alloc_fi.patch | 2 +-
...6-kernel-Kernel-update-for-3.7.2-201.fc18.patch | 2 +-
...pat-posix_acl_-to-from-_xattr-take-user_n.patch | 6 +--
...006-LU-2800-llite-introduce-local-getname.patch | 2 +-
.../files/0007-LU-2987-llite-rcu-free-inode.patch | 2 +-
...50-kernel-3.8-upstream-removes-vmtruncate.patch | 2 +-
...-2850-kernel-3.8-upstream-kills-daemonize.patch | 55 ++++++++++----------
...rnel-3.9-hlist_for_each_entry-uses-3-args.patch | 2 +-
...79-kernel-f_vfsmnt-replaced-by-f_path.mnt.patch | 2 +-
...ids-fix-compilation-error-with-gcc-4.7.2.patch} | 4 +-
...-build-zfs-0.6.1-kmod-dkms-compatibility.patch} | 4 +-
sys-cluster/lustre/lustre-9999.ebuild | 14 +-----
33 files changed, 243 insertions(+), 218 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-05-30 10:31 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: 4873ee2bc60d04d34ab4a70d7b4e19dfeee51b83
Author: Sébastien Fabbro <bicatali <AT> gentoo <DOT> org>
AuthorDate: Wed Apr 24 15:29:10 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Apr 24 15:29:10 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=4873ee2b
Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
dev-java/flexdock/Manifest | 2 +-
....2-nodemo.patch => flexdock-1.2.3-nodemo.patch} | 0
...flexdock-1.2.2.ebuild => flexdock-1.2.3.ebuild} | 8 +--
dev-java/jlatexmath-fop/Manifest | 3 +-
.../files/jlatexmath-fop-1.0.2-fixpaths.patch | 13 +++++
dev-java/jlatexmath-fop/files/version.xml | 5 ++
.../jlatexmath-fop/jlatexmath-fop-0.9.7.ebuild | 52 -------------------
.../jlatexmath-fop/jlatexmath-fop-1.0.0.ebuild | 52 -------------------
.../jlatexmath-fop/jlatexmath-fop-1.0.2.ebuild | 45 +++++++++++++++++
dev-java/jlatexmath/Manifest | 3 +-
dev-java/jlatexmath/jlatexmath-1.0.0.ebuild | 32 ------------
...exmath-0.9.7.ebuild => jlatexmath-1.0.2.ebuild} | 22 ++++----
dev-java/scirenderer/Manifest | 2 +-
...derer-1.0.5.ebuild => scirenderer-1.1.0.ebuild} | 4 +-
dev-java/xmlgraphics-commons/Manifest | 1 +
.../files/disable-iccprofile-test.patch | 38 ++++++++++++++
.../{jrosetta => xmlgraphics-commons}/metadata.xml | 1 -
.../xmlgraphics-commons-1.5.ebuild | 58 ++++++++++++++++++++++
18 files changed, 181 insertions(+), 160 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-05-06 8:26 [gentoo-commits] proj/sci:master " Justin Lecher
@ 2013-05-30 10:31 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: bed58ebacc7eae6a8064eb2ea3d0f3c28ebb833c
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Apr 29 06:17:22 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Apr 29 06:17:22 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=bed58eba
Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
* 'master' of git+ssh://git.overlays.gentoo.org/proj/sci:
remove la files, added static-libs use flag
initial commit
sci-libs/bliss/ChangeLog | 10 +
sci-libs/bliss/Manifest | 1 +
sci-libs/bliss/bliss-0.72.ebuild | 43 ++
sci-libs/bliss/files/bliss-0.72-autotools.patch | 159 ++++++
sci-libs/bliss/files/bliss-0.72-fedora.patch | 648 ++++++++++++++++++++++++
{dev-lang/ispc => sci-libs/bliss}/metadata.xml | 1 +
6 files changed, 862 insertions(+)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-05-30 10:31 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: 52856f2bdf0d60884389fb5362340c64e693f6e6
Author: Justin <jlec <AT> j-schmitz <DOT> net>
AuthorDate: Mon Apr 29 06:32:16 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Apr 29 06:32:16 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=52856f2b
Merge pull request #65 from gentryx/master
New ebuild: VampirTrace
dev-util/VampirTrace/Manifest | 1 +
dev-util/VampirTrace/VampirTrace-5.14.3.ebuild | 33 +++++++++++++++++++++++
dev-util/VampirTrace/metadata.xml | 13 ++++++++++
licenses/vampir | 36 ++++++++++++++++++++++++++
sys-apps/likwid/files/use_uncore.patch | 12 +++++++++
sys-apps/likwid/likwid-3.0.ebuild | 5 ++--
sys-apps/likwid/metadata.xml | 7 +++--
7 files changed, 103 insertions(+), 4 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-05-30 10:31 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: 92f5fe738767b83d6b5633fa9b2a1a14c4e68721
Author: Sébastien Fabbro <bicatali <AT> gentoo <DOT> org>
AuthorDate: Mon Apr 29 16:21:49 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Apr 29 16:21:49 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=92f5fe73
Merge github.com:gentoo-science/sci
dev-util/VampirTrace/Manifest | 1 +
dev-util/VampirTrace/VampirTrace-5.14.3.ebuild | 33 ++
dev-util/VampirTrace/metadata.xml | 13 +
licenses/vampir | 36 ++
sci-libs/bliss/ChangeLog | 10 +
sci-libs/bliss/Manifest | 1 +
sci-libs/bliss/bliss-0.72.ebuild | 43 ++
sci-libs/bliss/files/bliss-0.72-autotools.patch | 159 ++++++
sci-libs/bliss/files/bliss-0.72-fedora.patch | 648 ++++++++++++++++++++++++
{dev-lang/ispc => sci-libs/bliss}/metadata.xml | 1 +
sys-apps/likwid/files/use_uncore.patch | 12 +
sys-apps/likwid/likwid-3.0.ebuild | 5 +-
sys-apps/likwid/metadata.xml | 7 +-
13 files changed, 965 insertions(+), 4 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-05-30 10:31 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: a95f26fa2fc4e7d22f146b6e233e6173236c3ac1
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Apr 30 09:44:29 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Apr 30 09:44:29 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a95f26fa
Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
* 'master' of git+ssh://git.overlays.gentoo.org/proj/sci:
sci-biology/mira-3.9.15: bump to current besta version
sci-biology/mira/ChangeLog | 6 ++++++
sci-biology/mira/Manifest | 1 +
sci-biology/mira/{mira-3.9.9.ebuild => mira-3.9.15.ebuild} | 9 ++++++---
3 files changed, 13 insertions(+), 3 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-05-30 10:31 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: ee996859aa60cadce87685737ddbd62cae7a8652
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Apr 30 07:17:21 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Apr 30 07:17:21 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=ee996859
Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
* 'master' of git+ssh://git.overlays.gentoo.org/proj/sci:
Update description
Updated skel files
sci-libs/armadillo: Version bump
dev-python/astlib: Version bump
dev-cpp/eigen: Version bump
added missing metadata.xml
removed superfluous dot
corrected use flag-dependend configure switch
pleasing repoman
removed asciidata, replaced by astropy and asciitable
added VampirTrace ebuild
fixed conditional
proper indentation
added useflag to enable uncore events
README.md | 16 +-
dev-cpp/eigen/ChangeLog | 8 +-
dev-cpp/eigen/Manifest | 2 +-
.../{eigen-3.1.2.ebuild => eigen-3.1.3-r1.ebuild} | 0
dev-cpp/eigen/eigen-9999.ebuild | 10 +-
dev-python/asciidata/ChangeLog | 28 -
dev-python/asciidata/Manifest | 1 -
dev-python/asciidata/asciidata-1.1.1-r1.ebuild | 41 -
dev-python/asciidata/metadata.xml | 13 -
dev-python/astlib/ChangeLog | 8 +-
dev-python/astlib/Manifest | 2 +-
.../{astlib-0.17.1.ebuild => astlib-0.7.0.ebuild} | 31 +-
.../astlib/files/astlib-0.17.1-wcstools.patch | 75 -
dev-python/astlib/metadata.xml | 3 +-
dev-util/VampirTrace/Manifest | 1 +
dev-util/VampirTrace/VampirTrace-5.14.3.ebuild | 33 +
dev-util/VampirTrace/metadata.xml | 13 +
licenses/vampir | 36 +
sci-libs/armadillo/ChangeLog | 7 +
sci-libs/armadillo/Manifest | 2 +-
...lo-3.6.3-r1.ebuild => armadillo-3.810.2.ebuild} | 35 +-
.../files/armadillo-3.810.2-example-makefile.patch | 33 +
.../armadillo/files/armadillo-3.810.2-hdf5.patch | 19 +
sci-libs/armadillo/metadata.xml | 20 +-
skel.ChangeLog | 8024 +-------------------
skel.ebuild | 2 +-
skel.metadata.xml | 38 +-
sys-apps/likwid/files/use_uncore.patch | 12 +
sys-apps/likwid/likwid-3.0.ebuild | 5 +-
sys-apps/likwid/metadata.xml | 7 +-
30 files changed, 265 insertions(+), 8260 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-05-30 10:31 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: 0d7bd5b0a5573db70afe91a91985ea501de5990b
Author: Andreas Schäfer <gentryx <AT> gmx <DOT> de>
AuthorDate: Wed May 1 18:30:38 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed May 1 18:30:38 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0d7bd5b0
merge
README.md | 16 +-
dev-cpp/eigen/ChangeLog | 8 +-
dev-cpp/eigen/Manifest | 2 +-
.../{eigen-3.1.2.ebuild => eigen-3.1.3-r1.ebuild} | 0
dev-cpp/eigen/eigen-9999.ebuild | 10 +-
dev-python/asciidata/ChangeLog | 28 -
dev-python/asciidata/Manifest | 1 -
dev-python/asciidata/asciidata-1.1.1-r1.ebuild | 41 -
dev-python/asciidata/metadata.xml | 13 -
dev-python/astlib/ChangeLog | 8 +-
dev-python/astlib/Manifest | 2 +-
.../{astlib-0.17.1.ebuild => astlib-0.7.0.ebuild} | 31 +-
.../astlib/files/astlib-0.17.1-wcstools.patch | 75 -
dev-python/astlib/metadata.xml | 3 +-
sci-libs/armadillo/ChangeLog | 7 +
sci-libs/armadillo/Manifest | 2 +-
...lo-3.6.3-r1.ebuild => armadillo-3.810.2.ebuild} | 35 +-
.../files/armadillo-3.810.2-example-makefile.patch | 33 +
.../armadillo/files/armadillo-3.810.2-hdf5.patch | 19 +
sci-libs/armadillo/metadata.xml | 20 +-
sci-libs/bliss/ChangeLog | 10 +
sci-libs/bliss/Manifest | 1 +
sci-libs/bliss/bliss-0.72.ebuild | 43 +
sci-libs/bliss/files/bliss-0.72-autotools.patch | 159 +
sci-libs/bliss/files/bliss-0.72-fedora.patch | 648 ++
{dev-lang/ispc => sci-libs/bliss}/metadata.xml | 1 +
skel.ChangeLog | 8024 +-------------------
skel.ebuild | 2 +-
skel.metadata.xml | 38 +-
29 files changed, 1024 insertions(+), 8256 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-05-30 10:31 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: e334b4c9480ce3caa26dfe0f22d51d9fad528a5c
Author: Kacper Kowalik <xarthisius.kk <AT> gmail <DOT> com>
AuthorDate: Wed May 1 20:07:14 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed May 1 20:07:14 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e334b4c9
Merge pull request #67 from gentryx/master
fix for bug #468034
dev-util/VampirTrace/VampirTrace-5.14.3.ebuild | 6 +++++-
1 file changed, 5 insertions(+), 1 deletion(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-05-30 10:31 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: d557b6f923a63df5cd78512561ec0f59ebf23369
Author: Andreas Schäfer <gentryx <AT> gmx <DOT> de>
AuthorDate: Wed May 1 18:29:34 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed May 1 18:29:34 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=d557b6f9
Merge branch 'master' of https://github.com/gentoo-science/sci
README.md | 16 +-
dev-cpp/eigen/ChangeLog | 8 +-
dev-cpp/eigen/Manifest | 2 +-
.../{eigen-3.1.2.ebuild => eigen-3.1.3-r1.ebuild} | 0
dev-cpp/eigen/eigen-9999.ebuild | 10 +-
dev-python/asciidata/ChangeLog | 28 -
dev-python/asciidata/Manifest | 1 -
dev-python/asciidata/asciidata-1.1.1-r1.ebuild | 41 -
dev-python/asciidata/metadata.xml | 13 -
dev-python/astlib/ChangeLog | 8 +-
dev-python/astlib/Manifest | 2 +-
.../{astlib-0.17.1.ebuild => astlib-0.7.0.ebuild} | 31 +-
.../astlib/files/astlib-0.17.1-wcstools.patch | 75 -
dev-python/astlib/metadata.xml | 3 +-
sci-libs/armadillo/ChangeLog | 7 +
sci-libs/armadillo/Manifest | 2 +-
...lo-3.6.3-r1.ebuild => armadillo-3.810.2.ebuild} | 35 +-
.../files/armadillo-3.810.2-example-makefile.patch | 33 +
.../armadillo/files/armadillo-3.810.2-hdf5.patch | 19 +
sci-libs/armadillo/metadata.xml | 20 +-
sci-libs/bliss/ChangeLog | 10 +
sci-libs/bliss/Manifest | 1 +
sci-libs/bliss/bliss-0.72.ebuild | 43 +
sci-libs/bliss/files/bliss-0.72-autotools.patch | 159 +
sci-libs/bliss/files/bliss-0.72-fedora.patch | 648 ++
{dev-lang/ispc => sci-libs/bliss}/metadata.xml | 1 +
skel.ChangeLog | 8024 +-------------------
skel.ebuild | 2 +-
skel.metadata.xml | 38 +-
29 files changed, 1024 insertions(+), 8256 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-05-30 10:31 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: c211d024db7b25bcfa9f40787598e32f2e094ce3
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon May 6 05:56:48 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon May 6 05:56:48 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=c211d024
Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
* 'master' of git+ssh://git.overlays.gentoo.org/proj/sci:
sync with gx86
media-gfx/brlcad: version bumped to 7.22.0, bug#467456
added recent 4.5.x version from gx86 (bug #468454)
sci-libs/mkl: Version Bump
selectively call cuda.eclass, depending on use flag
reverting inheritance
refactoring CUDA interaction
conditional inheritance to fix compilation sans CUDA
dev-util/VampirTrace/VampirTrace-5.14.3.ebuild | 6 +-
media-gfx/brlcad/ChangeLog | 5 +-
media-gfx/brlcad/Manifest | 1 +
.../{brlcad-7.20.4.ebuild => brlcad-7.22.0.ebuild} | 16 +++---
media-gfx/brlcad/brlcad-9999.ebuild | 8 +--
sci-chemistry/gromacs/ChangeLog | 10 ++++
sci-chemistry/gromacs/Manifest | 2 +
.../files/gromacs-4.5.7-cmake-cpp-asm.patch | 43 ++++++++++++++
...gromacs-9999.ebuild => gromacs-4.5.9999.ebuild} | 65 ++++++++++++++--------
sci-chemistry/gromacs/metadata.xml | 1 +
sci-libs/mkl/ChangeLog | 5 ++
sci-libs/mkl/Manifest | 4 ++
...mkl-11.0.2.146.ebuild => mkl-11.0.3.163.ebuild} | 4 +-
13 files changed, 130 insertions(+), 40 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
@ 2013-05-30 10:31 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: 6ca1acbed7e02eeb48b39f436f2e22452c6d5e77
Author: Kacper Kowalik (Xarthisius) <xarthisius <AT> gentoo <DOT> org>
AuthorDate: Wed May 1 20:09:09 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed May 1 20:09:09 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=6ca1acbe
Merge branch 'master' of github.com:gentoo-science/sci
dev-util/VampirTrace/VampirTrace-5.14.3.ebuild | 6 +++++-
1 file changed, 5 insertions(+), 1 deletion(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-05-30 10:31 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: 4eee2440583895501cb394c61ab68134729dace9
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue May 7 10:13:18 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue May 7 10:13:18 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=4eee2440
Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
* 'master' of git+ssh://git.overlays.gentoo.org/proj/sci:
Update lustre patches
sys-cluster/lustre/ChangeLog | 29 +
...01-LU-1812-kernel-3.7-FC18-server-patches.patch | 380 +
...rnel-3.0-SuSE-and-3.6-FC18-server-patches.patch | 21302 -------------------
...el-sock_map_fd-replaced-by-sock_alloc_fi.patch} | 4 +-
...-kernel-Kernel-update-for-3.7.2-201.fc18.patch} | 10 +-
...at-posix_acl_-to-from-_xattr-take-user_n.patch} | 12 +-
...05-LU-2800-llite-introduce-local-getname.patch} | 16 +-
...tch => 0006-LU-2987-llite-rcu-free-inode.patch} | 8 +-
...0-kernel-3.8-upstream-removes-vmtruncate.patch} | 8 +-
...2850-kernel-3.8-upstream-kills-daemonize.patch} | 167 +-
...-build-zfs-0.6.1-kmod-dkms-compatibility.patch} | 175 +-
...d-make-AC-check-for-linux-arch-sandbox-f.patch} | 8 +-
...nel-3.9-hlist_for_each_entry-uses-3-args.patch} | 8 +-
...9-kernel-f_vfsmnt-replaced-by-f_path.mnt.patch} | 10 +-
...fids-fix-compilation-error-with-gcc-4.7.2.patch | 29 -
sys-cluster/lustre/lustre-9999.ebuild | 25 +-
16 files changed, 695 insertions(+), 21496 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-05-15 6:19 [gentoo-commits] proj/sci:master " Justin Lecher
@ 2013-05-30 10:31 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: 93f7c9e6fb6b8cbb5a19a1ff93ef0218e5a3068a
Author: Justin <jlec <AT> j-schmitz <DOT> net>
AuthorDate: Wed May 15 06:07:41 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed May 15 06:07:41 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=93f7c9e6
Merge pull request #70 from jauhien/berkeley_upc_2.16.2
dev-lang/berkeley_upc and dev-lang/berkeley_upc_translator: version bump
dev-lang/berkeley_upc/ChangeLog | 6 ++++++
dev-lang/berkeley_upc/Manifest | 2 +-
...ey_upc-2.16.0.ebuild => berkeley_upc-2.16.2.ebuild} | 0
dev-lang/berkeley_upc_translator/ChangeLog | 8 ++++++++
dev-lang/berkeley_upc_translator/Manifest | 2 +-
....0.ebuild => berkeley_upc_translator-2.16.2.ebuild} | 5 +----
.../berkeley_upc_translator-2.16.0-stackoverflow.patch | 18 ------------------
7 files changed, 17 insertions(+), 24 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-05-15 6:19 [gentoo-commits] proj/sci:master " Justin Lecher
@ 2013-05-30 10:31 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: f9333efdd2335abaa5be654ab21fbb55f9fe17a1
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed May 15 06:19:29 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed May 15 06:19:29 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f9333efd
Merge remote-tracking branch 'github/master'
* github/master:
dev-lang/berkeley_upc and dev-lang/berkeley_upc_translator: version bump
dev-lang/berkeley_upc/ChangeLog | 6 ++++++
dev-lang/berkeley_upc/Manifest | 2 +-
...ey_upc-2.16.0.ebuild => berkeley_upc-2.16.2.ebuild} | 0
dev-lang/berkeley_upc_translator/ChangeLog | 8 ++++++++
dev-lang/berkeley_upc_translator/Manifest | 2 +-
....0.ebuild => berkeley_upc_translator-2.16.2.ebuild} | 5 +----
.../berkeley_upc_translator-2.16.0-stackoverflow.patch | 18 ------------------
7 files changed, 17 insertions(+), 24 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-05-30 10:31 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: dbf1d3a5ed02ce670672682a4bdc6fec652edd92
Author: Andreas Schäfer <gentryx <AT> gmx <DOT> de>
AuthorDate: Wed May 15 07:04:28 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed May 15 07:04:28 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=dbf1d3a5
merge
README.md | 16 +-
app-doc/root-docs/ChangeLog | 9 +-
app-doc/root-docs/Manifest | 3 +-
app-doc/root-docs/root-docs-5.32.04.ebuild | 96 -
...ocs-5.34.03.ebuild => root-docs-5.34.05.ebuild} | 5 +-
app-doc/root-docs/root-docs-9999.ebuild | 3 +-
app-doc/scalapack-docs/ChangeLog | 7 +-
app-doc/scalapack-docs/metadata.xml | 3 +-
app-doc/scalapack-docs/scalapack-docs-2.0.ebuild | 6 +-
app-forensics/vine/ChangeLog | 11 +
app-forensics/vine/Manifest | 1 +
app-forensics/vine/files/vine-1.0-binutils.patch | 16 +
app-forensics/vine/files/vine-1.0-gcc46.patch | 37 +
app-forensics/vine/files/vine-1.0-install.patch | 89 +
.../vine/files/vine-1.0-ocamlgraph182.patch | 68 +
{dev-lang/ispc => app-forensics/vine}/metadata.xml | 0
app-forensics/vine/vine-1.0.ebuild | 40 +
app-portage/g-octave/ChangeLog | 6 +-
app-portage/g-octave/g-octave-9999.ebuild | 44 +-
app-portage/g-octave/metadata.xml | 10 +-
app-text/jabref/ChangeLog | 12 +
app-text/jabref/Manifest | 1 +
...{jabref-2.9.2-r1.ebuild => jabref-2.10b.ebuild} | 13 +-
app-text/jabref/jabref-2.9.2-r1.ebuild | 9 +-
dev-cpp/eigen/ChangeLog | 8 +-
dev-cpp/eigen/Manifest | 2 +-
.../{eigen-3.1.2.ebuild => eigen-3.1.3-r1.ebuild} | 0
dev-cpp/eigen/eigen-9999.ebuild | 10 +-
dev-db/cppdb/ChangeLog | 26 +
dev-db/cppdb/Manifest | 1 +
dev-db/cppdb/cppdb-0.3.1-r1.ebuild | 50 +
dev-db/cppdb/metadata.xml | 13 +
dev-java/flexdock/Manifest | 2 +-
....2-nodemo.patch => flexdock-1.2.3-nodemo.patch} | 0
...flexdock-1.2.2.ebuild => flexdock-1.2.3.ebuild} | 8 +-
dev-java/gluegen/ChangeLog | 4 +
dev-java/gluegen/gluegen-2.0_rc8.ebuild | 2 +-
dev-java/gluegen/metadata.xml | 4 +-
dev-java/jcip-annotations/ChangeLog | 6 +-
dev-java/jcip-annotations/Manifest | 2 +-
.../jcip-annotations-1.0-r1.ebuild | 7 +-
dev-java/jcip-annotations/metadata.xml | 13 +-
dev-java/jlatexmath-fop/Manifest | 3 +-
.../files/jlatexmath-fop-1.0.2-fixpaths.patch | 13 +
dev-java/jlatexmath-fop/files/version.xml | 5 +
.../jlatexmath-fop/jlatexmath-fop-0.9.7.ebuild | 52 -
.../jlatexmath-fop/jlatexmath-fop-1.0.0.ebuild | 52 -
.../jlatexmath-fop/jlatexmath-fop-1.0.2.ebuild | 45 +
dev-java/jlatexmath/Manifest | 3 +-
dev-java/jlatexmath/jlatexmath-1.0.0.ebuild | 32 -
...exmath-0.9.7.ebuild => jlatexmath-1.0.2.ebuild} | 22 +-
dev-java/jogl/ChangeLog | 4 +
dev-java/jogl/jogl-2.0_rc8-r1.ebuild | 2 +-
dev-java/jogl/metadata.xml | 10 +-
dev-java/netcdf/Manifest | 2 +-
dev-java/scirenderer/Manifest | 2 +-
...derer-1.0.5.ebuild => scirenderer-1.1.0.ebuild} | 4 +-
dev-java/xmlgraphics-commons/Manifest | 1 +
.../files/disable-iccprofile-test.patch | 38 +
.../xmlgraphics-commons}/metadata.xml | 2 +-
.../xmlgraphics-commons-1.5.ebuild | 58 +
dev-lang/berkeley_upc/ChangeLog | 10 +
dev-lang/berkeley_upc/Manifest | 1 +
dev-lang/berkeley_upc/berkeley_upc-2.16.0.ebuild | 55 +
dev-lang/berkeley_upc/metadata.xml | 25 +
dev-lang/berkeley_upc_translator/ChangeLog | 11 +
dev-lang/berkeley_upc_translator/Manifest | 1 +
.../berkeley_upc_translator-2.16.0.ebuild | 30 +
...keley_upc_translator-2.16.0-stackoverflow.patch | 18 +
.../berkeley_upc_translator}/metadata.xml | 4 +-
dev-lang/julia/files/julia-nopatchelf.patch | 14 +
dev-lang/julia/julia-9999.ebuild | 28 +-
dev-lang/julia/metadata.xml | 8 +-
dev-lang/vtune/ChangeLog | 8 +-
dev-lang/vtune/Manifest | 4 +-
dev-lang/vtune/metadata.xml | 8 +-
dev-lang/vtune/vtune-11.0.7.221625.ebuild | 69 -
dev-lang/vtune/vtune-13.1.4.270817.ebuild | 38 +
dev-libs/double-conversion/ChangeLog | 10 +-
dev-libs/double-conversion/Manifest | 2 +-
...n-1.1.ebuild => double-conversion-1.1.1.ebuild} | 8 +-
...s.patch => double-conversion-1.1.1-scons.patch} | 0
dev-libs/fortrancl/ChangeLog | 8 +
dev-libs/fortrancl/fortrancl-0.1_alpha3.ebuild | 5 +-
dev-libs/fortrancl/metadata.xml | 12 +-
dev-libs/libpfm/ChangeLog | 12 +
dev-libs/libpfm/Manifest | 1 +
dev-libs/libpfm/libpfm-4.3.0.ebuild | 35 +
.../envytools => dev-libs/libpfm}/metadata.xml | 0
dev-libs/mathjax/ChangeLog | 10 -
dev-libs/mathjax/Manifest | 1 -
dev-libs/mathjax/mathjax-2.0.ebuild | 50 -
dev-libs/mathjax/metadata.xml | 17 -
dev-libs/papi/ChangeLog | 9 +
dev-libs/papi/Manifest | 1 +
{x11-misc/envytools => dev-libs/papi}/metadata.xml | 0
dev-libs/papi/papi-5.1.0.2.ebuild | 30 +
dev-ml/lacaml/ChangeLog | 6 +-
dev-ml/lacaml/lacaml-7.0.3.ebuild | 12 +-
dev-ml/lacaml/metadata.xml | 4 +-
dev-ml/zarith/ChangeLog | 3 +
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sci-visualization/v_sim/v_sim-3.6.0.ebuild | 4 +-
sci-visualization/yt/yt-9999.ebuild | 3 +-
skel.ChangeLog | 2 +-
skel.ebuild | 2 +-
skel.metadata.xml | 38 +-
sys-apps/likwid/metadata.xml | 2 -
sys-cluster/blcr/ChangeLog | 5 +-
sys-cluster/blcr/blcr-0.8.4.ebuild | 3 +-
sys-cluster/blcr/metadata.xml | 4 +-
sys-cluster/empi/ChangeLog | 10 +-
.../empi/{empi-0.7.ebuild => empi-0.8.ebuild} | 2 +-
sys-cluster/empi/files/ChangeLog-0.7 | 164 -
sys-cluster/empi/files/ChangeLog-0.8 | 68 +
sys-cluster/empi/files/empi-0.7 | 408 -
sys-cluster/empi/files/empi-0.8 | 492 +
.../files/{eselect.mpi-0.7 => eselect.mpi-0.8} | 2 +-
sys-cluster/hpl/ChangeLog | 9 +-
sys-cluster/hpl/Manifest | 2 +-
sys-cluster/hpl/hpl-2.0-r1.ebuild | 20 +-
sys-cluster/hpl/metadata.xml | 12 +-
sys-cluster/lustre/ChangeLog | 333 +
...ld-make-AC-check-for-linux-arch-sandbox-f.patch | 95 +
...rnel-3.0-SuSE-and-3.6-FC18-server-patches.patch | 21302 +++++++++++++++++++
...nel-sock_map_fd-replaced-by-sock_alloc_fi.patch | 137 +
...6-kernel-Kernel-update-for-3.7.2-201.fc18.patch | 184 +
...pat-posix_acl_-to-from-_xattr-take-user_n.patch | 159 +
...006-LU-2800-llite-introduce-local-getname.patch | 91 +
.../files/0007-LU-2987-llite-rcu-free-inode.patch | 89 +
...50-kernel-3.8-upstream-removes-vmtruncate.patch | 83 +
...-2850-kernel-3.8-upstream-kills-daemonize.patch | 2966 +++
...rnel-3.9-hlist_for_each_entry-uses-3-args.patch | 115 +
...79-kernel-f_vfsmnt-replaced-by-f_path.mnt.patch | 82 +
...fids-fix-compilation-error-with-gcc-4.7.2.patch | 29 +
...7-build-zfs-0.6.1-kmod-dkms-compatibility.patch | 1038 +
sys-cluster/lustre/lustre-9999.ebuild | 94 +-
sys-cluster/lustre/metadata.xml | 3 +
sys-cluster/mvapich2/ChangeLog | 7 +
sys-cluster/mvapich2/Manifest | 2 +-
sys-cluster/mvapich2/mvapich2-1.6-r1.ebuild | 4 +-
sys-cluster/openmpi/ChangeLog | 6 +
sys-cluster/openmpi/Manifest | 2 +-
.../{openmpi-1.6.3.ebuild => openmpi-1.6.4.ebuild} | 7 +-
sys-cluster/ovis/ChangeLog | 5 +-
sys-cluster/ovis/metadata.xml | 10 +-
sys-cluster/ovis/ovis-3.0.1.ebuild | 6 +-
virtual/blas/ChangeLog | 2 +-
virtual/lapack/ChangeLog | 8 +-
virtual/lapack/lapack-3.3.ebuild | 23 -
virtual/lapack/lapack-3.4.ebuild | 23 +
virtual/lapack/metadata.xml | 3 +-
virtual/scalapack/ChangeLog | 9 +-
virtual/scalapack/metadata.xml | 4 +-
.../{scalapack-1.8.ebuild => scalapack-2.0.ebuild} | 6 +-
x11-libs/xview-bin/ChangeLog | 9 +-
x11-libs/xview-bin/Manifest | 2 +-
x11-libs/xview-bin/metadata.xml | 10 +-
x11-libs/xview-bin/xview-bin-3.2_p1428.ebuild | 6 +-
x11-libs/xview/ChangeLog | 12 +-
x11-libs/xview/Manifest | 1 +
x11-libs/xview/metadata.xml | 10 +-
x11-libs/xview/xview-3.2-r6.ebuild | 4 +-
x11-libs/xview/xview-3.2-r7.ebuild | 4 +-
.../{xview-3.2-r7.ebuild => xview-3.2-r8.ebuild} | 8 +-
923 files changed, 36037 insertions(+), 9438 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-05-30 10:31 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: d0e84807421952d08fa33651bca8034dd8d9ef66
Author: Andreas Schäfer <gentryx <AT> gmx <DOT> de>
AuthorDate: Wed May 15 10:59:54 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed May 15 10:59:54 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=d0e84807
Merge /usr/local/portage/andis_overlay
dev-util/amdapp/amdapp-2.8.ebuild | 20 +++++++++-----------
1 file changed, 9 insertions(+), 11 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
@ 2013-05-30 10:31 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: e2ebd47001ac3f20d9f10b3fea8091dacdfa757b
Author: Andreas Schäfer <gentryx <AT> gmx <DOT> de>
AuthorDate: Wed May 15 08:09:29 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed May 15 08:09:29 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e2ebd470
Merge https://github.com/gentoo-science/sci
dev-lang/berkeley_upc/ChangeLog | 6 +
dev-lang/berkeley_upc/Manifest | 2 +-
...pc-2.16.0.ebuild => berkeley_upc-2.16.2.ebuild} | 0
dev-lang/berkeley_upc_translator/ChangeLog | 8 +
dev-lang/berkeley_upc_translator/Manifest | 2 +-
...build => berkeley_upc_translator-2.16.2.ebuild} | 5 +-
...keley_upc_translator-2.16.0-stackoverflow.patch | 18 -
dev-python/pysparse/ChangeLog | 11 +-
dev-python/pysparse/Manifest | 3 +-
dev-python/pysparse/metadata.xml | 4 +-
dev-python/pysparse/pysparse-1.1.1-r1.ebuild | 60 +
dev-python/pysparse/pysparse-1.1.1.ebuild | 53 -
dev-python/pysparse/pysparse-1.1.ebuild | 53 -
media-gfx/brlcad/ChangeLog | 5 +-
media-gfx/brlcad/Manifest | 1 +
.../{brlcad-7.20.4.ebuild => brlcad-7.22.0.ebuild} | 16 +-
media-gfx/brlcad/brlcad-9999.ebuild | 8 +-
sci-biology/mira/ChangeLog | 6 +
sci-biology/mira/Manifest | 1 +
.../mira/{mira-3.9.9.ebuild => mira-3.9.15.ebuild} | 9 +-
sci-chemistry/curvefit/ChangeLog | 3 +
sci-chemistry/curvefit/curvefit-1.40.ebuild | 6 +-
sci-chemistry/gromacs/ChangeLog | 10 +
sci-chemistry/gromacs/Manifest | 2 +
.../files/gromacs-4.5.7-cmake-cpp-asm.patch | 43 +
...gromacs-9999.ebuild => gromacs-4.5.9999.ebuild} | 65 +-
sci-chemistry/gromacs/metadata.xml | 1 +
sci-chemistry/modelfree/ChangeLog | 12 +
sci-chemistry/modelfree/modelfree-4.20.ebuild | 33 +-
sci-chemistry/ucsf-tools/ChangeLog | 8 +
sci-chemistry/ucsf-tools/Manifest | 2 +
sci-chemistry/ucsf-tools/metadata.xml | 31 +-
sci-chemistry/ucsf-tools/ucsf-tools-9999.ebuild | 6 +-
sci-libs/mkl/ChangeLog | 5 +
sci-libs/mkl/Manifest | 4 +
...mkl-11.0.2.146.ebuild => mkl-11.0.3.163.ebuild} | 4 +-
sci-libs/nfft/ChangeLog | 28 -
sci-libs/nfft/Manifest | 1 -
sci-libs/nfft/metadata.xml | 9 -
sci-libs/nfft/nfft-3.2.2.ebuild | 32 -
sci-mathematics/scilab/Manifest | 2 +-
.../scilab/files/scilab-5.4.0-builddocs.patch | 353 -
.../scilab/files/scilab-5.4.0-fortran-link.patch | 22 -
.../scilab/files/scilab-5.4.0-java-heap.patch | 12 -
... scilab-5.4.1-fix-random-runtime-failure.patch} | 0
...wlinks.patch => scilab-5.4.1-followlinks.patch} | 0
....0-gluegen.patch => scilab-5.4.1-gluegen.patch} | 0
.../scilab/files/scilab-5.4.1-java-heap.patch | 14 +
.../{scilab-5.4.0.ebuild => scilab-5.4.1.ebuild} | 45 +-
sci-physics/lammps/ChangeLog | 31 +
sci-physics/lammps/Manifest | 1 +
.../lammps/files/Makefile.gentoo-serial.patch | 111 +
sci-physics/lammps/lammps-20130512.ebuild | 65 +
sci-physics/lammps/metadata.xml | 32 +
sys-cluster/lustre/ChangeLog | 52 +
...01-LU-1812-kernel-3.7-FC18-server-patches.patch | 380 +
...rnel-3.0-SuSE-and-3.6-FC18-server-patches.patch | 21302 -------------------
...el-sock_map_fd-replaced-by-sock_alloc_fi.patch} | 4 +-
...-kernel-Kernel-update-for-3.7.2-201.fc18.patch} | 22 +-
...at-posix_acl_-to-from-_xattr-take-user_n.patch} | 12 +-
...05-LU-2800-llite-introduce-local-getname.patch} | 16 +-
...tch => 0006-LU-2987-llite-rcu-free-inode.patch} | 8 +-
...0-kernel-3.8-upstream-removes-vmtruncate.patch} | 8 +-
...2850-kernel-3.8-upstream-kills-daemonize.patch} | 167 +-
...d-make-AC-check-for-linux-arch-sandbox-f.patch} | 10 +-
...rnel-3.9-hlist_for_each_entry-uses-3-args.patch | 8 +-
...79-kernel-f_vfsmnt-replaced-by-f_path.mnt.patch | 10 +-
...uild-fix-compilation-error-with-gcc-4.7.2.patch | 43 +
...fids-fix-compilation-error-with-gcc-4.7.2.patch | 29 -
...7-build-zfs-0.6.1-kmod-dkms-compatibility.patch | 1038 -
sys-cluster/lustre/lustre-9999.ebuild | 29 +-
71 files changed, 1196 insertions(+), 23206 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
@ 2013-05-30 10:31 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: 00c58fa25bbf4f532f15d305b12b8cbb1a922fbb
Author: Justin <jlec <AT> j-schmitz <DOT> net>
AuthorDate: Wed May 15 11:30:37 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed May 15 11:30:37 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=00c58fa2
Merge pull request #71 from gentryx/master
Added ebuild for AMD APP
dev-util/VampirTrace/metadata.xml | 3 ++
dev-util/amdapp/Manifest | 2 ++
dev-util/amdapp/amdapp-2.8.ebuild | 63 ++++++++++++++++++++++++++++++++++++++
dev-util/amdapp/metadata.xml | 15 +++++++++
sci-libs/libgeodecomp/metadata.xml | 3 ++
sys-apps/likwid/metadata.xml | 3 ++
sys-cluster/hpx/metadata.xml | 3 ++
7 files changed, 92 insertions(+)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
@ 2013-05-30 10:31 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: 622626fb55bac4fc611c9f41148e634d426efa20
Author: Christoph Junghans <christoph.junghans <AT> googlemail <DOT> com>
AuthorDate: Wed May 15 19:48:11 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed May 15 19:48:11 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=622626fb
Merge pull request #69 from nicolasbock/master
Enable parallel (MPI) build of lammps
sci-physics/lammps/ChangeLog | 5 +
.../lammps/files/Makefile.gentoo-serial.patch | 111 ---------------------
sci-physics/lammps/lammps-20130512.ebuild | 73 ++++++++------
sci-physics/lammps/metadata.xml | 2 -
4 files changed, 45 insertions(+), 146 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-05-30 10:31 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: d6c6e1c2e0344384f91edf1416824713ef207142
Author: Nicolas Bock <nicolasbock <AT> gmail <DOT> com>
AuthorDate: Thu May 16 21:22:58 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu May 16 21:22:58 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=d6c6e1c2
Merge branch 'master' of github.com:gentoo-science/sci
dev-lang/berkeley_upc/berkeley_upc-2.16.2.ebuild | 3 +++
1 file changed, 3 insertions(+)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
@ 2013-05-30 10:31 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: b81fff6dcf24a0ab91f631a42e9996b556a05439
Author: Justin <jlec <AT> j-schmitz <DOT> net>
AuthorDate: Thu May 16 06:33:04 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu May 16 06:33:04 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b81fff6d
Merge pull request #72 from jauhien/berkeley_upc_2.16.2
dev-lang/berkeley_upc: dependency on virtual/mpi added
dev-lang/berkeley_upc/berkeley_upc-2.16.2.ebuild | 3 +++
1 file changed, 3 insertions(+)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-05-30 10:31 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: 09bde6b122936401cd0f27bafa2c565c1d29a9e1
Author: Andrew Savchenko <bircoph <AT> gmail <DOT> com>
AuthorDate: Tue May 28 20:27:32 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue May 28 20:27:32 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=09bde6b1
Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
sci-physics/lammps/ChangeLog | 11 +++++++++++
sci-physics/lammps/Manifest | 1 +
sci-physics/lammps/lammps-20130514.ebuild | 7 +++++--
.../lammps/{lammps-20130514.ebuild => lammps-20130526.ebuild} | 9 ++++++---
4 files changed, 23 insertions(+), 5 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-05-30 10:31 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-05-30 10:31 UTC (permalink / raw
To: gentoo-commits
commit: cd7d9ba38de3df2079f68c53db8ae4fa6fb3dab3
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu May 30 10:29:38 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu May 30 10:29:38 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=cd7d9ba3
Merge branch 'master' into ccp4
* master: (776 commits)
Moved to tree Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-chemistry/coot: Move to new python eclasses
sci-chemistry/coot: Drop version from clipper
root-docs: fix sandbox access violation
root: fix build with postgres
Moved html documentation one folder up.
Version bump.
Added html documentation.
sci-libs/blas-reference: proper versioning for live ebuild
sci-libs/coinor-flopcpp: Initial import
Switch to EAPI5
sci-libs/coinor-sample: Version bump
sci-libs/coinor-symphony: Version bump
sci-libs/coinor-cppad: Version bump
sci-libs/coinor-cbc: Version bump
sci-libs/coinor-cgl: Fixed missing header
sci-libs/coinor-buildtools: Initial import
sci-libs/coinor-alps: Version bump
removed in source builds
sci-libs/coinor-cgl: Version bump
...
Conflicts:
sci-chemistry/jligand/ChangeLog
sci-chemistry/jligand/Manifest
sci-chemistry/jligand/jligand-1.0.37.ebuild
.DS_Store | Bin 15364 -> 0 bytes
README.md | 16 +-
app-admin/eselect/ChangeLog | 14 +-
app-admin/eselect/Manifest | 3 +-
app-admin/eselect/eselect-1.3.2-r100.ebuild | 80 -
app-admin/eselect/eselect-1.3.3-r100.ebuild | 79 -
app-admin/eselect/eselect-1.3.4-r100.ebuild | 73 +
app-admin/eselect/files/eselect-1.3.2-eroot.patch | 11 -
app-admin/eselect/files/eselect-alternatives.patch | 2 +-
app-admin/eselect/metadata.xml | 6 +-
app-doc/gromacs-manual/ChangeLog | 37 -
.../gromacs-manual/gromacs-manual-4.6.9999.ebuild | 50 -
app-doc/gromacs-manual/gromacs-manual-9999.ebuild | 50 -
app-doc/gromacs-manual/metadata.xml | 5 -
app-doc/root-docs/ChangeLog | 16 +-
app-doc/root-docs/Manifest | 3 +-
.../root-docs/files/root-docs-5.32-makehtml.patch | 44 -
app-doc/root-docs/root-docs-5.32.04.ebuild | 96 -
app-doc/root-docs/root-docs-5.34.03.ebuild | 96 -
app-doc/root-docs/root-docs-5.34.07.ebuild | 76 +
app-doc/root-docs/root-docs-9999.ebuild | 3 +-
app-doc/scalapack-docs/ChangeLog | 7 +-
app-doc/scalapack-docs/metadata.xml | 3 +-
app-doc/scalapack-docs/scalapack-docs-2.0.ebuild | 6 +-
app-doc/votca-csg-manual/ChangeLog | 25 -
app-doc/votca-csg-manual/metadata.xml | 9 -
.../votca-csg-manual/votca-csg-manual-9999.ebuild | 38 -
app-forensics/vine/ChangeLog | 11 +
app-forensics/vine/Manifest | 1 +
app-forensics/vine/files/vine-1.0-binutils.patch | 16 +
app-forensics/vine/files/vine-1.0-gcc46.patch | 37 +
app-forensics/vine/files/vine-1.0-install.patch | 89 +
.../vine/files/vine-1.0-ocamlgraph182.patch | 68 +
.../vine}/metadata.xml | 0
app-forensics/vine/vine-1.0.ebuild | 40 +
app-portage/g-octave/ChangeLog | 6 +-
app-portage/g-octave/g-octave-9999.ebuild | 44 +-
app-portage/g-octave/metadata.xml | 10 +-
app-text/jabref/ChangeLog | 31 +
app-text/jabref/Manifest | 2 +
app-text/jabref/jabref-2.10b.ebuild | 31 +
app-text/jabref/jabref-2.9.2-r1.ebuild | 31 +
app-text/jabref/jabref-2.9.2.ebuild | 28 +
app-text/jabref/metadata.xml | 8 +
dev-cpp/eigen/ChangeLog | 11 +-
dev-cpp/eigen/Manifest | 3 +-
dev-cpp/eigen/eigen-3.1.2.ebuild | 1 -
...eigen-3.1.1-r1.ebuild => eigen-3.1.3-r1.ebuild} | 0
dev-cpp/eigen/eigen-9999.ebuild | 10 +-
dev-cpp/growler-arch/metadata.xml | 14 +-
dev-cpp/growler-core/metadata.xml | 19 +-
dev-cpp/growler-link/metadata.xml | 9 +-
dev-cpp/growler-math/metadata.xml | 13 +-
dev-cpp/growler-thread/metadata.xml | 17 +-
dev-cpp/growler/metadata.xml | 13 +-
dev-db/cppdb/ChangeLog | 26 +
dev-db/cppdb/Manifest | 1 +
dev-db/cppdb/cppdb-0.3.1-r1.ebuild | 50 +
dev-db/cppdb/metadata.xml | 13 +
dev-java/flexdock/Manifest | 2 +-
....0-nodemo.patch => flexdock-1.2.3-nodemo.patch} | 0
dev-java/flexdock/flexdock-1.2.0.ebuild | 51 -
dev-java/flexdock/flexdock-1.2.3.ebuild | 45 +
dev-java/gluegen/ChangeLog | 12 +-
dev-java/gluegen/Manifest | 1 +
dev-java/gluegen/gluegen-2.0_rc8.ebuild | 87 +
dev-java/gluegen/metadata.xml | 4 +-
dev-java/jcip-annotations/ChangeLog | 6 +-
dev-java/jcip-annotations/Manifest | 2 +-
.../jcip-annotations-1.0-r1.ebuild | 7 +-
dev-java/jcip-annotations/metadata.xml | 9 +-
dev-java/jlatexmath-fop/Manifest | 3 +-
.../files/jlatexmath-fop-1.0.2-fixpaths.patch | 13 +
dev-java/jlatexmath-fop/files/version.xml | 5 +
.../jlatexmath-fop/jlatexmath-fop-0.9.7.ebuild | 52 -
.../jlatexmath-fop/jlatexmath-fop-1.0.0.ebuild | 52 -
.../jlatexmath-fop/jlatexmath-fop-1.0.2.ebuild | 45 +
dev-java/jlatexmath/Manifest | 3 +-
dev-java/jlatexmath/jlatexmath-0.9.7.ebuild | 32 -
dev-java/jlatexmath/jlatexmath-1.0.0.ebuild | 32 -
dev-java/jlatexmath/jlatexmath-1.0.2.ebuild | 32 +
dev-java/jogl/ChangeLog | 12 +-
dev-java/jogl/Manifest | 3 +-
dev-java/jogl/jogl-2.0_rc8-r1.ebuild | 100 +
dev-java/jogl/metadata.xml | 10 +-
dev-java/jrosetta/files/engine-build.xml | 2 +-
dev-java/jrosetta/files/metadata.xml | 6 -
dev-java/jrosetta/jrosetta-1.0.4.ebuild | 12 +-
dev-java/jrosetta/metadata.xml | 3 +-
dev-java/netcdf/Manifest | 2 +-
dev-java/scirenderer/Manifest | 2 +-
dev-java/scirenderer/scirenderer-1.0.2.ebuild | 40 -
dev-java/scirenderer/scirenderer-1.1.0.ebuild | 40 +
dev-java/vecmath/metadata.xml | 9 +-
dev-java/xmlgraphics-commons/Manifest | 1 +
.../files/disable-iccprofile-test.patch | 38 +
.../xmlgraphics-commons}/metadata.xml | 0
.../xmlgraphics-commons-1.5.ebuild | 58 +
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sci-physics/geant/ChangeLog | 353 ++
sci-physics/geant/Manifest | 2 +
sci-physics/geant/geant-3.21.14-r4.ebuild | 70 +
sci-physics/geant/metadata.xml | 14 +
sci-physics/herwig++/ChangeLog | 16 +-
sci-physics/herwig++/Manifest | 2 +-
...ptools.patch => herwig++-2.6.3-looptools.patch} | 0
sci-physics/herwig++/herwig++-2.6.1b.ebuild | 50 -
sci-physics/herwig++/herwig++-2.6.3.ebuild | 50 +
sci-physics/lammps/ChangeLog | 55 +
sci-physics/lammps/Manifest | 3 +
sci-physics/lammps/lammps-20130512.ebuild | 72 +
sci-physics/lammps/lammps-20130514.ebuild | 75 +
sci-physics/lammps/lammps-20130526.ebuild | 75 +
sci-physics/lammps/metadata.xml | 30 +
sci-physics/openmx/ChangeLog | 17 +
sci-physics/openmx/Manifest | 2 +
sci-physics/openmx/metadata.xml | 5 +
sci-physics/openmx/openmx-3.6.ebuild | 97 +
sci-physics/root/ChangeLog | 29 +-
sci-physics/root/Manifest | 5 +-
.../root/files/root-5.28.00b-asneeded.patch | 20 -
.../root/files/root-5.28.00b-nobyte-compile.patch | 138 -
.../root/files/root-5.28.00b-prop-ldflags.patch | 13 -
.../files/root-5.32.00-explicit-functions.patch | 18 -
.../root/files/root-5.32.00-prop-flags.patch | 15 +
.../root/files/root-5.34.05-nobyte-compile.patch | 137 +
sci-physics/root/metadata.xml | 39 +-
sci-physics/root/root-5.32.04.ebuild | 378 --
sci-physics/root/root-5.34.03.ebuild | 378 --
sci-physics/root/root-5.34.07.ebuild | 381 ++
sci-physics/root/root-9999.ebuild | 16 +-
sci-physics/thepeg/ChangeLog | 16 +-
sci-physics/thepeg/Manifest | 6 +-
...eg-1.8.1-java.patch => thepeg-1.8.3-java.patch} | 0
sci-physics/thepeg/thepeg-1.8.1.ebuild | 92 -
sci-physics/thepeg/thepeg-1.8.3.ebuild | 92 +
sci-physics/vgm/ChangeLog | 13 +
sci-physics/vgm/metadata.xml | 13 +
sci-physics/vgm/vgm-3.06.ebuild | 64 +
sci-visualization/ferret-bin/ChangeLog | 7 +-
sci-visualization/ferret-bin/Manifest | 10 +-
.../ferret-bin/ferret-bin-6.6.4.ebuild | 52 +-
sci-visualization/ferret-bin/metadata.xml | 12 +-
sci-visualization/gnuplot/ChangeLog | 22 +-
sci-visualization/gnuplot/gnuplot-4.6.9999.ebuild | 213 +-
sci-visualization/gnuplot/gnuplot-4.7.9999.ebuild | 181 +-
sci-visualization/gnuplot/metadata.xml | 26 +-
sci-visualization/labplot/metadata.xml | 3 +-
sci-visualization/paraview/ChangeLog | 14 +-
.../paraview/files/paraview-3.14.1-vtknetcd.patch | 50 +-
sci-visualization/paraview/metadata.xml | 36 +-
sci-visualization/paraview/paraview-3.10.1.ebuild | 28 +-
sci-visualization/paraview/paraview-3.12.0.ebuild | 26 +-
.../paraview/paraview-3.14.1-r4.ebuild | 26 +-
sci-visualization/v_sim/ChangeLog | 6 +-
sci-visualization/v_sim/Manifest | 4 +-
sci-visualization/v_sim/metadata.xml | 26 +-
sci-visualization/v_sim/v_sim-3.5.1.ebuild | 80 -
sci-visualization/v_sim/v_sim-3.5.2.ebuild | 87 -
sci-visualization/v_sim/v_sim-3.6.0.ebuild | 4 +-
sci-visualization/yt/yt-9999.ebuild | 3 +-
skel.ChangeLog | 2 +-
skel.ebuild | 7 +-
skel.metadata.xml | 38 +-
sys-apps/likwid/Manifest | 1 +
sys-apps/likwid/files/likwid.patch | 27 +
sys-apps/likwid/files/use_access_daemon.patch | 27 +
sys-apps/likwid/files/use_uncore.patch | 12 +
sys-apps/likwid/likwid-3.0.ebuild | 33 +
sys-apps/likwid/metadata.xml | 22 +
sys-cluster/blcr/ChangeLog | 5 +-
sys-cluster/blcr/blcr-0.8.4.ebuild | 3 +-
sys-cluster/blcr/metadata.xml | 4 +-
sys-cluster/empi/ChangeLog | 10 +-
sys-cluster/empi/empi-0.7.ebuild | 28 -
sys-cluster/empi/empi-0.8.ebuild | 28 +
sys-cluster/empi/files/ChangeLog-0.7 | 164 -
sys-cluster/empi/files/ChangeLog-0.8 | 68 +
sys-cluster/empi/files/empi-0.7 | 408 --
sys-cluster/empi/files/empi-0.8 | 492 +++
sys-cluster/empi/files/eselect.mpi-0.7 | 274 --
sys-cluster/empi/files/eselect.mpi-0.8 | 274 ++
sys-cluster/hpl/ChangeLog | 9 +-
sys-cluster/hpl/Manifest | 2 +-
sys-cluster/hpl/hpl-2.0-r1.ebuild | 20 +-
sys-cluster/hpl/metadata.xml | 12 +-
sys-cluster/hpx/Manifest | 1 +
sys-cluster/hpx/hpx-0.9.5.ebuild | 28 +
sys-cluster/hpx/metadata.xml | 17 +
sys-cluster/lustre/ChangeLog | 419 +-
...01-LU-1812-kernel-3.7-FC18-server-patches.patch | 380 ++
...nel-sock_map_fd-replaced-by-sock_alloc_fi.patch | 137 +
...6-kernel-Kernel-update-for-3.7.2-201.fc18.patch | 184 +
...pat-posix_acl_-to-from-_xattr-take-user_n.patch | 159 +
...005-LU-2800-llite-introduce-local-getname.patch | 91 +
.../files/0006-LU-2987-llite-rcu-free-inode.patch | 89 +
...50-kernel-3.8-upstream-removes-vmtruncate.patch | 83 +
...-2850-kernel-3.8-upstream-kills-daemonize.patch | 3005 ++++++++++++++
...ld-make-AC-check-for-linux-arch-sandbox-f.patch | 95 +
...rnel-3.9-hlist_for_each_entry-uses-3-args.patch | 115 +
...79-kernel-f_vfsmnt-replaced-by-f_path.mnt.patch | 82 +
...uild-fix-compilation-error-with-gcc-4.7.2.patch | 43 +
...7-vfs-kernel-3.1-renames-lock-manager-ops.patch | 190 -
...37-vfs-kernel-3.1-kills-inode-i_alloc_sem.patch | 242 --
...fs-kernel-3.1-changes-open_to_namei_flags.patch | 95 -
...7-vfs-provides-ll_get_acl-to-i_op-get_acl.patch | 150 -
...ck-kernel-3.2-make_request_fn-returns-voi.patch | 108 -
...337-vfs-kernel-3.2-protects-inode-i_nlink.patch | 194 -
...-3.3-changes-super_operations-inode_opera.patch | 217 -
...nel-remove-unnecessary-includings-of-syst.patch | 211 -
...-kernel-3.4-touch_atime-switchs-to-1-argu.patch | 89 -
...-kernel-3.4-converts-d_alloc_root-to-d_ma.patch | 128 -
...1-LU-1337-kernel-v3.5-defines-INVALID_UID.patch | 31 -
...te-kernel-3.5-renames-end_writeback-to-cl.patch | 90 -
...nel-3.5-kernel-encode_fh-passes-in-parent.patch | 88 -
sys-cluster/lustre/lustre-9999.ebuild | 103 +-
sys-cluster/lustre/metadata.xml | 5 +
sys-cluster/mvapich2/ChangeLog | 7 +
sys-cluster/mvapich2/Manifest | 2 +-
sys-cluster/mvapich2/mvapich2-1.6-r1.ebuild | 4 +-
sys-cluster/openmpi/ChangeLog | 14 +-
sys-cluster/openmpi/Manifest | 2 +-
sys-cluster/openmpi/metadata.xml | 2 -
sys-cluster/openmpi/openmpi-1.5.3.ebuild | 115 -
sys-cluster/openmpi/openmpi-1.6.4.ebuild | 160 +
sys-cluster/ovis/ChangeLog | 5 +-
sys-cluster/ovis/metadata.xml | 10 +-
sys-cluster/ovis/ovis-3.0.1.ebuild | 6 +-
virtual/blas/ChangeLog | 5 +-
virtual/blas/blas-2.1.ebuild | 4 +-
virtual/blas/metadata.xml | 4 +-
virtual/cblas/ChangeLog | 6 +-
virtual/cblas/cblas-2.0.ebuild | 4 +-
virtual/geant/ChangeLog | 9 +
virtual/geant/geant-3.ebuild | 17 +
virtual/geant/metadata.xml | 8 +
virtual/lapack/ChangeLog | 8 +-
virtual/lapack/lapack-3.3.ebuild | 23 -
virtual/lapack/lapack-3.4.ebuild | 23 +
virtual/lapack/metadata.xml | 3 +-
virtual/scalapack/ChangeLog | 9 +-
virtual/scalapack/metadata.xml | 4 +-
virtual/scalapack/scalapack-1.8.ebuild | 21 -
virtual/scalapack/scalapack-2.0.ebuild | 21 +
x11-libs/xview-bin/ChangeLog | 9 +-
x11-libs/xview-bin/Manifest | 2 +-
x11-libs/xview-bin/metadata.xml | 10 +-
x11-libs/xview-bin/xview-bin-3.2_p1428.ebuild | 6 +-
x11-libs/xview/ChangeLog | 12 +-
x11-libs/xview/Manifest | 1 +
x11-libs/xview/metadata.xml | 10 +-
x11-libs/xview/xview-3.2-r6.ebuild | 4 +-
x11-libs/xview/xview-3.2-r7.ebuild | 4 +-
x11-libs/xview/xview-3.2-r8.ebuild | 108 +
1409 files changed, 29080 insertions(+), 27064 deletions(-)
diff --cc sci-chemistry/jligand/ChangeLog
index b555231,79845c4..9e2c106
--- a/sci-chemistry/jligand/ChangeLog
+++ b/sci-chemistry/jligand/ChangeLog
@@@ -1,17 -1,11 +1,17 @@@
# ChangeLog for sci-chemistry/jligand
- # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+ # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
- 10 Dec 2012; Justin Lecher <jlec@gentoo.org> -jligand-1.0.19.ebuild,
- +jligand-1.0.37.ebuild:
- Version Bump
+ 03 Mar 2013; Justin Lecher <jlec@gentoo.org> jligand-1.0.19.ebuild,
+ metadata.xml:
+ Fix version of refmac dep
+*jligand-1.0.37 (10 Dec 2012)
+
+ 10 Dec 2012; Justin Lecher <jlec@gentoo.org> -jligand-1.0.19.ebuild,
+ +jligand-1.0.37.ebuild:
+ Version Bump
+
*jligand-1.0.19 (25 Jun 2011)
25 Jun 2011; Justin Lecher <jlec@gentoo.org> -jligand-0.1.ebuild,
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
@ 2013-06-01 17:24 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-01 17:24 UTC (permalink / raw
To: gentoo-commits
commit: 5829b50ce4ea2442bc66e5f5773ea393ad6c1217
Author: Justin <jlec <AT> j-schmitz <DOT> net>
AuthorDate: Fri May 31 13:10:20 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri May 31 13:10:20 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5829b50c
Merge pull request #74 from gentryx/master
Updated Nvidia CUDA Toolkit to version 5.5
dev-util/nvidia-cuda-toolkit/ChangeLog | 186 +++++++++++++++++++++
dev-util/nvidia-cuda-toolkit/Manifest | 2 +
dev-util/nvidia-cuda-toolkit/files/cuda-config.in | 28 ++++
.../files/nvidia-cuda-toolkit-2.2-enum_fix.patch | 42 +++++
.../files/nvidia-cuda-toolkit-3.0-enum_fix.patch | 54 ++++++
.../files/nvidia-cuda-toolkit-3.1-enum_fix.patch | 24 +++
dev-util/nvidia-cuda-toolkit/metadata.xml | 19 +++
.../nvidia-cuda-toolkit-5.5.11.ebuild | 140 ++++++++++++++++
8 files changed, 495 insertions(+)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
@ 2013-06-01 17:24 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-01 17:24 UTC (permalink / raw
To: gentoo-commits
commit: 9c925b3b9c8753ba4f3cf41bb304c0870b4027fc
Author: Nicolas Bock <nicolasbock <AT> gmail <DOT> com>
AuthorDate: Fri May 31 15:31:31 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri May 31 15:31:31 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=9c925b3b
Merge branch 'master' of github.com:gentoo-science/sci
dev-util/nvidia-cuda-toolkit/ChangeLog | 186 +++++++++++++++++++++
dev-util/nvidia-cuda-toolkit/Manifest | 2 +
dev-util/nvidia-cuda-toolkit/files/cuda-config.in | 28 ++++
.../files/nvidia-cuda-toolkit-2.2-enum_fix.patch | 42 +++++
.../files/nvidia-cuda-toolkit-3.0-enum_fix.patch | 54 ++++++
.../files/nvidia-cuda-toolkit-3.1-enum_fix.patch | 24 +++
dev-util/nvidia-cuda-toolkit/metadata.xml | 19 +++
.../nvidia-cuda-toolkit-5.5.11.ebuild | 140 ++++++++++++++++
8 files changed, 495 insertions(+)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-06-01 17:24 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-01 17:24 UTC (permalink / raw
To: gentoo-commits
commit: 2e5282927d502d2b1d688c6b0c86fb569d60b970
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Jun 1 08:38:20 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Jun 1 08:38:20 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2e528292
Merge branch 'master' into ccp4
* master:
sync with gx86
Added die to test.
added cuda toolkit 5.5
Added src_test().
The "-DALLOCA_H" compiler flag appears to be unnecessary...
More cleanup. Beautify!
Added examples use flag.
Version bump to sys-cluster/charm-6.5.0.
sci-chemistry/freeon improved, the ebuild of the latest snapshot added. sci-chemistry/nwchem bumped to 6.3, building docs allowed.
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
Conflicts:
dev-util/nvidia-cuda-toolkit/ChangeLog
dev-util/nvidia-cuda-toolkit/metadata.xml
dev-util/nvidia-cuda-toolkit/nvidia-cuda-toolkit-5.5.11.ebuild
sys-cluster/charm/ChangeLog
sys-cluster/charm/charm-6.5.0.ebuild
dev-lang/ispc/ChangeLog | 3 +++
dev-lang/ispc/ispc-9999.ebuild | 13 ++++---------
sys-cluster/charm/ChangeLog | 3 +++
sys-cluster/charm/charm-6.5.0.ebuild | 2 +-
4 files changed, 11 insertions(+), 10 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-06-04 11:59 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-04 11:59 UTC (permalink / raw
To: gentoo-commits
commit: 20d1eb3e5708da1f9ce3e9ea54df28962e4ac2e6
Author: Justin <jlec <AT> j-schmitz <DOT> net>
AuthorDate: Mon Jun 3 14:35:50 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jun 3 14:35:50 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=20d1eb3e
Merge pull request #76 from ZeroPointEnergy/master
minimal versions update for scilab deps
sci-mathematics/scilab/scilab-5.4.1.ebuild | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
@ 2013-06-04 11:59 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-04 11:59 UTC (permalink / raw
To: gentoo-commits
commit: 37c670d2b2023da28771040ed39a12bcb8e2fb70
Author: Justin <jlec <AT> j-schmitz <DOT> net>
AuthorDate: Mon Jun 3 08:36:50 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jun 3 08:36:50 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=37c670d2
Merge pull request #75 from gentryx/master
Added ebuild for the PGI compiler suite
dev-lang/pgi/Manifest | 1 +
dev-lang/pgi/files/pgi-13.5-glibc.patch | 31 +++
dev-lang/pgi/files/pgi-13.5-terminal.patch | 39 +++
{dev-util/amdapp => dev-lang/pgi}/metadata.xml | 7 +-
dev-lang/pgi/pgi-13.5.ebuild | 115 +++++++++
licenses/PGI | 262 +++++++++++++++++++++
sys-cluster/modules/Manifest | 2 +-
.../modules/files/modules-3.2.9c-errorline.patch | 15 ++
sys-cluster/modules/modules-3.2.9c-r1.ebuild | 6 +-
9 files changed, 473 insertions(+), 5 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-06-04 11:59 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-04 11:59 UTC (permalink / raw
To: gentoo-commits
commit: 4a0cd7b7880db8bceb9a2c757d2dbce678822e6a
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 4 10:16:53 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 4 10:16:53 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=4a0cd7b7
Merge branch 'master' into ccp4
* master:
added ~amd64-linux + clean up
update minimal versions of some dependencies for scilab
replacing patch with epatch
using versioned patch for sys-cluster/modules, too
now using versioned patches
Fixed SRC_URI.
implemented clean fix for changed errorline API in TCL
relaced custom CURL with stock version
minor fixes to comply with Gentoo coding style
initial commit
sync with gx86
sci-chemistry/coot: Update pc patches
sci-chemistry/coot: Fix PYTHON() -> ${EPYTHON} for new eclasses
added fix for recent glibc with PGI
added PGI ebuild
added updated Manifest
fixed compilation of modules with recent tcl
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
Conflicts:
sci-chemistry/coot/ChangeLog
sci-chemistry/coot/coot-9999.ebuild
dev-java/jcip-annotations/ChangeLog | 3 +
.../jcip-annotations-1.0-r1.ebuild | 2 +-
dev-lang/pgi/Manifest | 1 +
dev-lang/pgi/files/pgi-13.5-glibc.patch | 31 +
dev-lang/pgi/files/pgi-13.5-terminal.patch | 39 +
{dev-util/amdapp => dev-lang/pgi}/metadata.xml | 7 +-
dev-lang/pgi/pgi-13.5.ebuild | 115 +++
licenses/PGI | 262 +++++
sci-chemistry/coot/ChangeLog | 5 +
sci-chemistry/coot/Manifest | 2 +-
sci-chemistry/coot/coot-9999.ebuild | 20 +-
sci-chemistry/coot/files/9999-clipper-config.patch | 17 -
sci-chemistry/coot/files/9999-goocanvas.patch | 25 -
sci-chemistry/coot/files/9999-mmdb-config.patch | 18 -
sci-chemistry/coot/files/9999-pc.patch | 1040 ++++++++++++++++++++
sci-chemistry/coot/files/9999-ssm.patch | 56 --
sci-chemistry/gromacs/ChangeLog | 3 +
sci-chemistry/gromacs/gromacs-4.6.9999.ebuild | 7 +-
sci-chemistry/mdsctk/ChangeLog | 13 +
sci-chemistry/mdsctk/Manifest | 1 +
sci-chemistry/mdsctk/mdsctk-1.0.0.ebuild | 51 +
.../mdsctk}/metadata.xml | 3 +
sci-mathematics/scilab/scilab-5.4.1.ebuild | 6 +-
sys-cluster/modules/Manifest | 2 +-
.../modules/files/modules-3.2.9c-errorline.patch | 15 +
sys-cluster/modules/modules-3.2.9c-r1.ebuild | 6 +-
26 files changed, 1609 insertions(+), 141 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
@ 2013-06-04 11:59 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-04 11:59 UTC (permalink / raw
To: gentoo-commits
commit: ddc3495e1874a534526ab006232b9453d05a58d5
Author: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Mon Jun 3 23:33:21 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jun 3 23:33:21 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=ddc3495e
Merge branch 'master' of ssh://github.com/gentoo-science/sci
dev-lang/pgi/Manifest | 1 +
dev-lang/pgi/files/pgi-13.5-glibc.patch | 31 +++
dev-lang/pgi/files/pgi-13.5-terminal.patch | 39 +++
{dev-util/amdapp => dev-lang/pgi}/metadata.xml | 7 +-
dev-lang/pgi/pgi-13.5.ebuild | 115 +++++++++
licenses/PGI | 262 +++++++++++++++++++++
sci-mathematics/scilab/scilab-5.4.1.ebuild | 6 +-
sys-cluster/modules/Manifest | 2 +-
.../modules/files/modules-3.2.9c-errorline.patch | 15 ++
sys-cluster/modules/modules-3.2.9c-r1.ebuild | 6 +-
10 files changed, 476 insertions(+), 8 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-06-10 12:01 Justin Lecher
2013-06-12 8:13 ` [gentoo-commits] proj/sci:jlec " Justin Lecher
0 siblings, 1 reply; 71+ messages in thread
From: Justin Lecher @ 2013-06-10 12:01 UTC (permalink / raw
To: gentoo-commits
commit: 2e117aae2ef793064afeb2676ca1e1f243d007e4
Author: Sébastien Fabbro <bicatali <AT> gentoo <DOT> org>
AuthorDate: Fri Jun 7 23:42:39 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Jun 7 23:42:39 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2e117aae
Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
sys-cluster/charm/charm-6.5.0.ebuild | 16 +++++++++++-----
sys-cluster/charm/metadata.xml | 1 +
sys-cluster/modules/ChangeLog | 9 +++++++--
sys-cluster/modules/Manifest | 1 +
.../{modules-3.2.9c-r1.ebuild => modules-3.2.10.ebuild} | 8 ++++----
5 files changed, 24 insertions(+), 11 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-06-10 12:01 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-10 12:01 UTC (permalink / raw
To: gentoo-commits
commit: d16a962a0cf74a66345e4a528395811573a7689e
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Jun 10 12:00:33 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jun 10 12:00:33 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=d16a962a
Merge branch 'master' into ccp4
* master: (46 commits)
dropped old Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/psychopy: Add missing python use dep, move to virtual/python-imaging
sci-chemistry/mgltools: move to virtual/python-imaging
sci-chemistry/mgltools-autodocktools: Add missing python use dep, move to virtual/python-imaging
sci-chemistry/mgltools-webservices: Drop old
sci-chemistry/mgltools-volume: Drop old
sci-chemistry/mgltools-visionlib: Drop old
sci-chemistry/mgltools-vision: Drop old
sci-chemistry/mgltools-viewer-framework: Drop old
sci-chemistry/mgltools-utpackages: Drop old
sci-chemistry/mgltools-symserv: Drop old
sci-chemistry/mgltools-support: Drop old
sci-chemistry/mgltools-sff: Drop old
sci-chemistry/mgltools-qslimlib: Drop old
sci-chemistry/mgltools-pyglf: Drop old
sci-chemistry/mgltools-pybabel: Drop old
sci-chemistry/mgltools-pyautodock: Drop old
sci-chemistry/mgltools-pmv: Drop old
sci-chemistry/mgltools-opengltk: Drop old
sci-chemistry/mgltools-networkeditor: Drop old
...
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
Conflicts:
sci-chemistry/mgltools/ChangeLog
sci-chemistry/mgltools/mgltools-1.5.6.ebuild
sci-physics/root/ChangeLog
sci-physics/root/root-5.34.08.ebuild
app-doc/root-docs/ChangeLog | 6 ++
app-doc/root-docs/Manifest | 7 +-
...ocs-5.34.07.ebuild => root-docs-5.34.08.ebuild} | 2 +-
dev-python/pysolar/ChangeLog | 8 ++-
dev-python/pysolar/Manifest | 2 +-
dev-python/pysolar/metadata.xml | 4 +-
dev-python/pysolar/pysolar-0.4.3.ebuild | 66 -------------------
dev-python/pysolar/pysolar-0.4.4.ebuild | 52 ++++++---------
dev-python/pysolar/pysolar-0.5.ebuild | 52 +++++++++++++++
media-gfx/librecad/ChangeLog | 3 +
media-gfx/librecad/Manifest | 1 +
....0.0_beta5.ebuild => librecad-2.0.0_rc1.ebuild} | 0
sci-astronomy/stilts/ChangeLog | 9 ++-
sci-astronomy/stilts/Manifest | 2 +-
.../{stilts-2.4.ebuild => stilts-2.5.ebuild} | 4 +-
sci-astronomy/topcat/ChangeLog | 8 ++-
sci-astronomy/topcat/Manifest | 2 +
.../{topcat-3.9.ebuild => topcat-4.0b.ebuild} | 4 +-
sci-biology/psychopy/ChangeLog | 8 +++
sci-biology/psychopy/metadata.xml | 8 +--
sci-biology/psychopy/psychopy-1.75.01.ebuild | 24 ++++---
sci-biology/psychopy/psychopy-9999.ebuild | 18 ++---
sci-chemistry/mgltools-autodocktools/ChangeLog | 8 +++
sci-chemistry/mgltools-autodocktools/Manifest | 1 -
.../mgltools-autodocktools-1.5.4-r2.ebuild | 77 ----------------------
.../mgltools-autodocktools-1.5.6.ebuild | 6 +-
sci-chemistry/mgltools-bhtree/ChangeLog | 4 ++
sci-chemistry/mgltools-bhtree/Manifest | 1 -
.../mgltools-bhtree-1.5.4-r1.ebuild | 54 ---------------
.../mgltools-bhtree/mgltools-bhtree-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-cmolkit/ChangeLog | 4 ++
sci-chemistry/mgltools-cmolkit/Manifest | 1 -
.../mgltools-cmolkit-1.5.4-r1.ebuild | 55 ----------------
.../mgltools-cmolkit/mgltools-cmolkit-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-dejavu/ChangeLog | 4 ++
sci-chemistry/mgltools-dejavu/Manifest | 1 -
.../mgltools-dejavu-1.5.4-r1.ebuild | 55 ----------------
.../mgltools-dejavu/mgltools-dejavu-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-geomutils/ChangeLog | 4 ++
sci-chemistry/mgltools-geomutils/Manifest | 1 -
.../mgltools-geomutils-1.5.4-r1.ebuild | 57 ----------------
.../mgltools-geomutils-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-gle/ChangeLog | 4 ++
sci-chemistry/mgltools-gle/Manifest | 1 -
.../mgltools-gle/mgltools-gle-1.5.4-r1.ebuild | 53 ---------------
.../mgltools-gle/mgltools-gle-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-mglutil/ChangeLog | 4 ++
sci-chemistry/mgltools-mglutil/Manifest | 1 -
.../mgltools-mglutil-1.5.4-r1.ebuild | 57 ----------------
.../mgltools-mglutil/mgltools-mglutil-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-molkit/ChangeLog | 4 ++
sci-chemistry/mgltools-molkit/Manifest | 1 -
.../mgltools-molkit-1.5.4-r1.ebuild | 56 ----------------
.../mgltools-molkit/mgltools-molkit-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-networkeditor/ChangeLog | 4 ++
sci-chemistry/mgltools-networkeditor/Manifest | 1 -
.../mgltools-networkeditor-1.5.4-r1.ebuild | 56 ----------------
.../mgltools-networkeditor-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-opengltk/ChangeLog | 4 ++
sci-chemistry/mgltools-opengltk/Manifest | 1 -
.../mgltools-opengltk-1.5.4-r2.ebuild | 63 ------------------
.../mgltools-opengltk-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-pmv/ChangeLog | 4 ++
sci-chemistry/mgltools-pmv/Manifest | 1 -
.../mgltools-pmv/mgltools-pmv-1.5.4-r1.ebuild | 63 ------------------
.../mgltools-pmv/mgltools-pmv-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-pyautodock/ChangeLog | 4 ++
sci-chemistry/mgltools-pyautodock/Manifest | 1 -
.../mgltools-pyautodock-1.5.4-r1.ebuild | 54 ---------------
.../mgltools-pyautodock-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-pybabel/ChangeLog | 4 ++
sci-chemistry/mgltools-pybabel/Manifest | 1 -
.../mgltools-pybabel-1.5.4-r1.ebuild | 56 ----------------
.../mgltools-pybabel/mgltools-pybabel-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-pyglf/ChangeLog | 4 ++
sci-chemistry/mgltools-pyglf/Manifest | 1 -
.../mgltools-pyglf/mgltools-pyglf-1.5.4-r1.ebuild | 54 ---------------
.../mgltools-pyglf/mgltools-pyglf-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-qslimlib/ChangeLog | 4 ++
sci-chemistry/mgltools-qslimlib/Manifest | 1 -
.../mgltools-qslimlib-1.5.4-r1.ebuild | 56 ----------------
.../mgltools-qslimlib-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-scenario/ChangeLog | 34 ----------
sci-chemistry/mgltools-scenario/Manifest | 1 -
sci-chemistry/mgltools-scenario/metadata.xml | 5 --
.../mgltools-scenario-1.5.4-r1.ebuild | 58 ----------------
sci-chemistry/mgltools-sff/ChangeLog | 4 ++
sci-chemistry/mgltools-sff/Manifest | 1 -
.../mgltools-sff/mgltools-sff-1.5.4-r1.ebuild | 55 ----------------
.../mgltools-sff/mgltools-sff-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-stride/ChangeLog | 35 ----------
sci-chemistry/mgltools-stride/Manifest | 1 -
sci-chemistry/mgltools-stride/metadata.xml | 5 --
.../mgltools-stride-1.5.4-r1.ebuild | 54 ---------------
sci-chemistry/mgltools-support/ChangeLog | 4 ++
sci-chemistry/mgltools-support/Manifest | 1 -
.../mgltools-support-1.5.4-r1.ebuild | 56 ----------------
.../mgltools-support/mgltools-support-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-symserv/ChangeLog | 4 ++
sci-chemistry/mgltools-symserv/Manifest | 1 -
.../mgltools-symserv-1.5.4-r1.ebuild | 54 ---------------
.../mgltools-symserv/mgltools-symserv-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-utpackages/ChangeLog | 4 ++
sci-chemistry/mgltools-utpackages/Manifest | 1 -
.../mgltools-utpackages-1.5.4-r1.ebuild | 56 ----------------
.../mgltools-utpackages-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-viewer-framework/ChangeLog | 5 ++
sci-chemistry/mgltools-viewer-framework/Manifest | 1 -
.../mgltools-viewer-framework-1.5.4-r2.ebuild | 58 ----------------
.../mgltools-viewer-framework-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-vision/ChangeLog | 4 ++
sci-chemistry/mgltools-vision/Manifest | 1 -
.../mgltools-vision-1.5.4-r1.ebuild | 64 ------------------
.../mgltools-vision/mgltools-vision-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-visionlib/ChangeLog | 4 ++
sci-chemistry/mgltools-visionlib/Manifest | 1 -
.../mgltools-visionlib-1.5.4-r1.ebuild | 53 ---------------
.../mgltools-visionlib-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-volume/ChangeLog | 4 ++
sci-chemistry/mgltools-volume/Manifest | 1 -
.../mgltools-volume-1.5.4-r1.ebuild | 55 ----------------
.../mgltools-volume/mgltools-volume-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-webservices/ChangeLog | 4 ++
sci-chemistry/mgltools-webservices/Manifest | 1 -
.../mgltools-webservices-1.5.4-r2.ebuild | 50 --------------
.../mgltools-webservices-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools/ChangeLog | 10 +++
sci-chemistry/mgltools/Manifest | 1 -
sci-chemistry/mgltools/mgltools-1.5.4.ebuild | 42 ------------
sci-chemistry/mgltools/mgltools-1.5.6.ebuild | 4 +-
sci-physics/geant-vmc/ChangeLog | 7 ++
sci-physics/geant-vmc/Manifest | 4 +-
...-vmc-3.1.14.ebuild => geant-vmc-3.1.15a.ebuild} | 0
...-vmc-4.2.14.ebuild => geant-vmc-4.2.14a.ebuild} | 2 +-
sci-physics/root/ChangeLog | 6 ++
sci-physics/root/Manifest | 4 +-
.../{root-5.34.07.ebuild => root-5.34.08.ebuild} | 4 +-
sys-cluster/charm/charm-6.5.0.ebuild | 16 +++--
sys-cluster/charm/metadata.xml | 1 +
sys-cluster/modules/ChangeLog | 9 ++-
sys-cluster/modules/Manifest | 1 +
...ules-3.2.9c-r1.ebuild => modules-3.2.10.ebuild} | 8 +--
142 files changed, 334 insertions(+), 1812 deletions(-)
diff --cc sci-chemistry/mgltools/ChangeLog
index ec9cc14,0806cda..34f728b
--- a/sci-chemistry/mgltools/ChangeLog
+++ b/sci-chemistry/mgltools/ChangeLog
@@@ -2,6 -2,13 +2,16 @@@
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
++<<<<<<< HEAD
++=======
+ 10 Jun 2013; Justin Lecher <jlec@gentoo.org> mgltools-1.5.6.ebuild:
+ move to virtual/python-imaging
+
+ 10 Jun 2013; Justin Lecher <jlec@gentoo.org> -mgltools-1.5.4.ebuild,
+ mgltools-1.5.6.ebuild:
+ Drop odl and drop py2.5
+
++>>>>>>> master
04 Jun 2013; Justin Lecher <jlec@gentoo.org> mgltools-1.5.6.ebuild:
Fix for correct usage of new python eclasses
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-06-10 11:57 [gentoo-commits] proj/sci:master " Justin Lecher
@ 2013-06-10 12:01 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-10 12:01 UTC (permalink / raw
To: gentoo-commits
commit: 027da5d57b8f0fc38a8b0800aebf466b1fe9d1d0
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Jun 10 11:57:07 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jun 10 11:57:07 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=027da5d5
Merge branch 'masterbroken'
* masterbroken: (33 commits)
dropped old Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/psychopy: Add missing python use dep, move to virtual/python-imaging
sci-chemistry/mgltools: move to virtual/python-imaging
sci-chemistry/mgltools-autodocktools: Add missing python use dep, move to virtual/python-imaging
sci-chemistry/mgltools-webservices: Drop old
sci-chemistry/mgltools-volume: Drop old
sci-chemistry/mgltools-visionlib: Drop old
sci-chemistry/mgltools-vision: Drop old
sci-chemistry/mgltools-viewer-framework: Drop old
sci-chemistry/mgltools-utpackages: Drop old
sci-chemistry/mgltools-symserv: Drop old
sci-chemistry/mgltools-support: Drop old
sci-chemistry/mgltools-sff: Drop old
sci-chemistry/mgltools-qslimlib: Drop old
sci-chemistry/mgltools-pyglf: Drop old
sci-chemistry/mgltools-pybabel: Drop old
sci-chemistry/mgltools-pyautodock: Drop old
sci-chemistry/mgltools-pmv: Drop old
sci-chemistry/mgltools-opengltk: Drop old
sci-chemistry/mgltools-networkeditor: Drop old
...
dev-python/pysolar/ChangeLog | 8 ++-
dev-python/pysolar/Manifest | 2 +-
dev-python/pysolar/metadata.xml | 4 +-
dev-python/pysolar/pysolar-0.4.3.ebuild | 66 -------------------
dev-python/pysolar/pysolar-0.4.4.ebuild | 52 ++++++---------
dev-python/pysolar/pysolar-0.5.ebuild | 52 +++++++++++++++
media-gfx/librecad/ChangeLog | 3 +
media-gfx/librecad/Manifest | 1 +
....0.0_beta5.ebuild => librecad-2.0.0_rc1.ebuild} | 0
sci-biology/psychopy/ChangeLog | 8 +++
sci-biology/psychopy/metadata.xml | 8 +--
sci-biology/psychopy/psychopy-1.75.01.ebuild | 24 ++++---
sci-biology/psychopy/psychopy-9999.ebuild | 18 ++---
sci-chemistry/mgltools-autodocktools/ChangeLog | 8 +++
sci-chemistry/mgltools-autodocktools/Manifest | 1 -
.../mgltools-autodocktools-1.5.4-r2.ebuild | 77 ----------------------
.../mgltools-autodocktools-1.5.6.ebuild | 6 +-
sci-chemistry/mgltools-bhtree/ChangeLog | 4 ++
sci-chemistry/mgltools-bhtree/Manifest | 1 -
.../mgltools-bhtree-1.5.4-r1.ebuild | 54 ---------------
.../mgltools-bhtree/mgltools-bhtree-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-cmolkit/ChangeLog | 4 ++
sci-chemistry/mgltools-cmolkit/Manifest | 1 -
.../mgltools-cmolkit-1.5.4-r1.ebuild | 55 ----------------
.../mgltools-cmolkit/mgltools-cmolkit-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-dejavu/ChangeLog | 4 ++
sci-chemistry/mgltools-dejavu/Manifest | 1 -
.../mgltools-dejavu-1.5.4-r1.ebuild | 55 ----------------
.../mgltools-dejavu/mgltools-dejavu-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-geomutils/ChangeLog | 4 ++
sci-chemistry/mgltools-geomutils/Manifest | 1 -
.../mgltools-geomutils-1.5.4-r1.ebuild | 57 ----------------
.../mgltools-geomutils-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-gle/ChangeLog | 4 ++
sci-chemistry/mgltools-gle/Manifest | 1 -
.../mgltools-gle/mgltools-gle-1.5.4-r1.ebuild | 53 ---------------
.../mgltools-gle/mgltools-gle-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-mglutil/ChangeLog | 4 ++
sci-chemistry/mgltools-mglutil/Manifest | 1 -
.../mgltools-mglutil-1.5.4-r1.ebuild | 57 ----------------
.../mgltools-mglutil/mgltools-mglutil-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-molkit/ChangeLog | 4 ++
sci-chemistry/mgltools-molkit/Manifest | 1 -
.../mgltools-molkit-1.5.4-r1.ebuild | 56 ----------------
.../mgltools-molkit/mgltools-molkit-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-networkeditor/ChangeLog | 4 ++
sci-chemistry/mgltools-networkeditor/Manifest | 1 -
.../mgltools-networkeditor-1.5.4-r1.ebuild | 56 ----------------
.../mgltools-networkeditor-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-opengltk/ChangeLog | 4 ++
sci-chemistry/mgltools-opengltk/Manifest | 1 -
.../mgltools-opengltk-1.5.4-r2.ebuild | 63 ------------------
.../mgltools-opengltk-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-pmv/ChangeLog | 4 ++
sci-chemistry/mgltools-pmv/Manifest | 1 -
.../mgltools-pmv/mgltools-pmv-1.5.4-r1.ebuild | 63 ------------------
.../mgltools-pmv/mgltools-pmv-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-pyautodock/ChangeLog | 4 ++
sci-chemistry/mgltools-pyautodock/Manifest | 1 -
.../mgltools-pyautodock-1.5.4-r1.ebuild | 54 ---------------
.../mgltools-pyautodock-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-pybabel/ChangeLog | 4 ++
sci-chemistry/mgltools-pybabel/Manifest | 1 -
.../mgltools-pybabel-1.5.4-r1.ebuild | 56 ----------------
.../mgltools-pybabel/mgltools-pybabel-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-pyglf/ChangeLog | 4 ++
sci-chemistry/mgltools-pyglf/Manifest | 1 -
.../mgltools-pyglf/mgltools-pyglf-1.5.4-r1.ebuild | 54 ---------------
.../mgltools-pyglf/mgltools-pyglf-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-qslimlib/ChangeLog | 4 ++
sci-chemistry/mgltools-qslimlib/Manifest | 1 -
.../mgltools-qslimlib-1.5.4-r1.ebuild | 56 ----------------
.../mgltools-qslimlib-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-scenario/ChangeLog | 34 ----------
sci-chemistry/mgltools-scenario/Manifest | 1 -
sci-chemistry/mgltools-scenario/metadata.xml | 5 --
.../mgltools-scenario-1.5.4-r1.ebuild | 58 ----------------
sci-chemistry/mgltools-sff/ChangeLog | 4 ++
sci-chemistry/mgltools-sff/Manifest | 1 -
.../mgltools-sff/mgltools-sff-1.5.4-r1.ebuild | 55 ----------------
.../mgltools-sff/mgltools-sff-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-stride/ChangeLog | 35 ----------
sci-chemistry/mgltools-stride/Manifest | 1 -
sci-chemistry/mgltools-stride/metadata.xml | 5 --
.../mgltools-stride-1.5.4-r1.ebuild | 54 ---------------
sci-chemistry/mgltools-support/ChangeLog | 4 ++
sci-chemistry/mgltools-support/Manifest | 1 -
.../mgltools-support-1.5.4-r1.ebuild | 56 ----------------
.../mgltools-support/mgltools-support-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-symserv/ChangeLog | 4 ++
sci-chemistry/mgltools-symserv/Manifest | 1 -
.../mgltools-symserv-1.5.4-r1.ebuild | 54 ---------------
.../mgltools-symserv/mgltools-symserv-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-utpackages/ChangeLog | 4 ++
sci-chemistry/mgltools-utpackages/Manifest | 1 -
.../mgltools-utpackages-1.5.4-r1.ebuild | 56 ----------------
.../mgltools-utpackages-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-viewer-framework/ChangeLog | 5 ++
sci-chemistry/mgltools-viewer-framework/Manifest | 1 -
.../mgltools-viewer-framework-1.5.4-r2.ebuild | 58 ----------------
.../mgltools-viewer-framework-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-vision/ChangeLog | 4 ++
sci-chemistry/mgltools-vision/Manifest | 1 -
.../mgltools-vision-1.5.4-r1.ebuild | 64 ------------------
.../mgltools-vision/mgltools-vision-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-visionlib/ChangeLog | 4 ++
sci-chemistry/mgltools-visionlib/Manifest | 1 -
.../mgltools-visionlib-1.5.4-r1.ebuild | 53 ---------------
.../mgltools-visionlib-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-volume/ChangeLog | 4 ++
sci-chemistry/mgltools-volume/Manifest | 1 -
.../mgltools-volume-1.5.4-r1.ebuild | 55 ----------------
.../mgltools-volume/mgltools-volume-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-webservices/ChangeLog | 4 ++
sci-chemistry/mgltools-webservices/Manifest | 1 -
.../mgltools-webservices-1.5.4-r2.ebuild | 50 --------------
.../mgltools-webservices-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools/ChangeLog | 7 ++
sci-chemistry/mgltools/Manifest | 1 -
sci-chemistry/mgltools/mgltools-1.5.4.ebuild | 42 ------------
sci-chemistry/mgltools/mgltools-1.5.6.ebuild | 4 +-
121 files changed, 254 insertions(+), 1783 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:jlec commit in: /
2013-06-10 12:01 [gentoo-commits] proj/sci:ccp4 commit in: / Justin Lecher
@ 2013-06-12 8:13 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-12 8:13 UTC (permalink / raw
To: gentoo-commits
commit: 2e117aae2ef793064afeb2676ca1e1f243d007e4
Author: Sébastien Fabbro <bicatali <AT> gentoo <DOT> org>
AuthorDate: Fri Jun 7 23:42:39 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Jun 7 23:42:39 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2e117aae
Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
sys-cluster/charm/charm-6.5.0.ebuild | 16 +++++++++++-----
sys-cluster/charm/metadata.xml | 1 +
sys-cluster/modules/ChangeLog | 9 +++++++--
sys-cluster/modules/Manifest | 1 +
.../{modules-3.2.9c-r1.ebuild => modules-3.2.10.ebuild} | 8 ++++----
5 files changed, 24 insertions(+), 11 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-06-13 7:08 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-13 7:08 UTC (permalink / raw
To: gentoo-commits
commit: 683aa6f0fbbecfb35014a2366ed152166f942df9
Author: Andreas Schäfer <gentryx <AT> gmx <DOT> de>
AuthorDate: Fri Jun 7 12:33:24 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Jun 7 12:33:24 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=683aa6f0
Merge /usr/local/portage/andis_overlay
sys-cluster/modules/modules-3.2.9c-r1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-06-17 5:55 [gentoo-commits] proj/sci:jlec " Justin Lecher
@ 2013-06-13 7:08 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-13 7:08 UTC (permalink / raw
To: gentoo-commits
commit: bccb9ee1e70dc0b9fba0b94cf87184fb0eb94d86
Author: Justin <jlec <AT> j-schmitz <DOT> net>
AuthorDate: Tue Jun 11 12:03:08 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 11 12:03:08 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=bccb9ee1
Merge pull request #79 from gentryx/master
Fixed compilation of sys-cluster/modules with tcl 8.5.14 and older
sys-cluster/modules/modules-3.2.9c-r1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-06-17 5:55 [gentoo-commits] proj/sci:jlec " Justin Lecher
@ 2013-06-13 7:08 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-13 7:08 UTC (permalink / raw
To: gentoo-commits
commit: 9b700ba0279d32f705eeaf56d91164d18586254c
Author: layman <layman <AT> localhost>
AuthorDate: Tue Jun 11 06:52:49 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 11 06:52:49 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=9b700ba0
Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
media-gfx/librecad/ChangeLog | 3 +
media-gfx/librecad/Manifest | 1 +
....0.0_beta5.ebuild => librecad-2.0.0_rc1.ebuild} | 0
sci-biology/psychopy/ChangeLog | 8 +++
sci-biology/psychopy/metadata.xml | 8 +--
sci-biology/psychopy/psychopy-1.75.01.ebuild | 24 ++++---
sci-biology/psychopy/psychopy-9999.ebuild | 18 ++---
sci-chemistry/mgltools-autodocktools/ChangeLog | 8 +++
sci-chemistry/mgltools-autodocktools/Manifest | 1 -
.../mgltools-autodocktools-1.5.4-r2.ebuild | 77 ----------------------
.../mgltools-autodocktools-1.5.6.ebuild | 6 +-
sci-chemistry/mgltools-bhtree/ChangeLog | 4 ++
sci-chemistry/mgltools-bhtree/Manifest | 1 -
.../mgltools-bhtree-1.5.4-r1.ebuild | 54 ---------------
.../mgltools-bhtree/mgltools-bhtree-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-cmolkit/ChangeLog | 4 ++
sci-chemistry/mgltools-cmolkit/Manifest | 1 -
.../mgltools-cmolkit-1.5.4-r1.ebuild | 55 ----------------
.../mgltools-cmolkit/mgltools-cmolkit-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-dejavu/ChangeLog | 4 ++
sci-chemistry/mgltools-dejavu/Manifest | 1 -
.../mgltools-dejavu-1.5.4-r1.ebuild | 55 ----------------
.../mgltools-dejavu/mgltools-dejavu-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-geomutils/ChangeLog | 4 ++
sci-chemistry/mgltools-geomutils/Manifest | 1 -
.../mgltools-geomutils-1.5.4-r1.ebuild | 57 ----------------
.../mgltools-geomutils-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-gle/ChangeLog | 4 ++
sci-chemistry/mgltools-gle/Manifest | 1 -
.../mgltools-gle/mgltools-gle-1.5.4-r1.ebuild | 53 ---------------
.../mgltools-gle/mgltools-gle-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-mglutil/ChangeLog | 4 ++
sci-chemistry/mgltools-mglutil/Manifest | 1 -
.../mgltools-mglutil-1.5.4-r1.ebuild | 57 ----------------
.../mgltools-mglutil/mgltools-mglutil-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-molkit/ChangeLog | 4 ++
sci-chemistry/mgltools-molkit/Manifest | 1 -
.../mgltools-molkit-1.5.4-r1.ebuild | 56 ----------------
.../mgltools-molkit/mgltools-molkit-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-networkeditor/ChangeLog | 4 ++
sci-chemistry/mgltools-networkeditor/Manifest | 1 -
.../mgltools-networkeditor-1.5.4-r1.ebuild | 56 ----------------
.../mgltools-networkeditor-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-opengltk/ChangeLog | 4 ++
sci-chemistry/mgltools-opengltk/Manifest | 1 -
.../mgltools-opengltk-1.5.4-r2.ebuild | 63 ------------------
.../mgltools-opengltk-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-pmv/ChangeLog | 4 ++
sci-chemistry/mgltools-pmv/Manifest | 1 -
.../mgltools-pmv/mgltools-pmv-1.5.4-r1.ebuild | 63 ------------------
.../mgltools-pmv/mgltools-pmv-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-pyautodock/ChangeLog | 4 ++
sci-chemistry/mgltools-pyautodock/Manifest | 1 -
.../mgltools-pyautodock-1.5.4-r1.ebuild | 54 ---------------
.../mgltools-pyautodock-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-pybabel/ChangeLog | 4 ++
sci-chemistry/mgltools-pybabel/Manifest | 1 -
.../mgltools-pybabel-1.5.4-r1.ebuild | 56 ----------------
.../mgltools-pybabel/mgltools-pybabel-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-pyglf/ChangeLog | 4 ++
sci-chemistry/mgltools-pyglf/Manifest | 1 -
.../mgltools-pyglf/mgltools-pyglf-1.5.4-r1.ebuild | 54 ---------------
.../mgltools-pyglf/mgltools-pyglf-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-qslimlib/ChangeLog | 4 ++
sci-chemistry/mgltools-qslimlib/Manifest | 1 -
.../mgltools-qslimlib-1.5.4-r1.ebuild | 56 ----------------
.../mgltools-qslimlib-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-scenario/ChangeLog | 34 ----------
sci-chemistry/mgltools-scenario/Manifest | 1 -
sci-chemistry/mgltools-scenario/metadata.xml | 5 --
.../mgltools-scenario-1.5.4-r1.ebuild | 58 ----------------
sci-chemistry/mgltools-sff/ChangeLog | 4 ++
sci-chemistry/mgltools-sff/Manifest | 1 -
.../mgltools-sff/mgltools-sff-1.5.4-r1.ebuild | 55 ----------------
.../mgltools-sff/mgltools-sff-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-stride/ChangeLog | 35 ----------
sci-chemistry/mgltools-stride/Manifest | 1 -
sci-chemistry/mgltools-stride/metadata.xml | 5 --
.../mgltools-stride-1.5.4-r1.ebuild | 54 ---------------
sci-chemistry/mgltools-support/ChangeLog | 4 ++
sci-chemistry/mgltools-support/Manifest | 1 -
.../mgltools-support-1.5.4-r1.ebuild | 56 ----------------
.../mgltools-support/mgltools-support-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-symserv/ChangeLog | 4 ++
sci-chemistry/mgltools-symserv/Manifest | 1 -
.../mgltools-symserv-1.5.4-r1.ebuild | 54 ---------------
.../mgltools-symserv/mgltools-symserv-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-utpackages/ChangeLog | 4 ++
sci-chemistry/mgltools-utpackages/Manifest | 1 -
.../mgltools-utpackages-1.5.4-r1.ebuild | 56 ----------------
.../mgltools-utpackages-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-viewer-framework/ChangeLog | 5 ++
sci-chemistry/mgltools-viewer-framework/Manifest | 1 -
.../mgltools-viewer-framework-1.5.4-r2.ebuild | 58 ----------------
.../mgltools-viewer-framework-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-vision/ChangeLog | 4 ++
sci-chemistry/mgltools-vision/Manifest | 1 -
.../mgltools-vision-1.5.4-r1.ebuild | 64 ------------------
.../mgltools-vision/mgltools-vision-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-visionlib/ChangeLog | 4 ++
sci-chemistry/mgltools-visionlib/Manifest | 1 -
.../mgltools-visionlib-1.5.4-r1.ebuild | 53 ---------------
.../mgltools-visionlib-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-volume/ChangeLog | 4 ++
sci-chemistry/mgltools-volume/Manifest | 1 -
.../mgltools-volume-1.5.4-r1.ebuild | 55 ----------------
.../mgltools-volume/mgltools-volume-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools-webservices/ChangeLog | 4 ++
sci-chemistry/mgltools-webservices/Manifest | 1 -
.../mgltools-webservices-1.5.4-r2.ebuild | 50 --------------
.../mgltools-webservices-1.5.6.ebuild | 2 +-
sci-chemistry/mgltools/ChangeLog | 7 ++
sci-chemistry/mgltools/Manifest | 1 -
sci-chemistry/mgltools/mgltools-1.5.4.ebuild | 42 ------------
sci-chemistry/mgltools/mgltools-1.5.6.ebuild | 4 +-
115 files changed, 173 insertions(+), 1680 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-06-17 5:55 [gentoo-commits] proj/sci:jlec " Justin Lecher
@ 2013-06-13 7:08 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-13 7:08 UTC (permalink / raw
To: gentoo-commits
commit: 26e27280f8681d111da0a0e75c5589ce427b0c31
Author: Sébastien Fabbro <bicatali <AT> gentoo <DOT> org>
AuthorDate: Wed Jun 12 22:01:16 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jun 12 22:01:16 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=26e27280
Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
profiles/package.mask | 113 ++++++-------------
sci-biology/ncbi-tools++/ChangeLog | 6 +
.../ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild | 3 +-
sci-chemistry/ball/ChangeLog | 3 +
sci-chemistry/ball/ball-9999.ebuild | 11 +-
sci-chemistry/ball/metadata.xml | 2 +-
sci-chemistry/hydronmr/ChangeLog | 3 +
sci-chemistry/hydronmr/hydronmr-7c.ebuild | 1 -
sci-libs/trilinos/ChangeLog | 4 +
sci-libs/trilinos/Manifest | 1 -
sci-libs/trilinos/trilinos-10.10.1.ebuild | 124 ---------------------
sci-libs/trilinos/trilinos-11.0.3.ebuild | 12 +-
12 files changed, 62 insertions(+), 221 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-06-17 5:55 [gentoo-commits] proj/sci:jlec " Justin Lecher
@ 2013-06-13 7:08 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-13 7:08 UTC (permalink / raw
To: gentoo-commits
commit: c644db6fdedd51e557ca30e22152029d327eaf68
Author: layman <layman <AT> localhost>
AuthorDate: Wed Jun 12 10:43:12 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jun 12 10:43:12 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=c644db6f
Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
dev-java/jgraphx/ChangeLog | 7 +++-
dev-java/jgraphx/Manifest | 3 --
dev-java/jgraphx/jgraphx-1.2.0.7.ebuild | 44 ----------------------
dev-java/jgraphx/jgraphx-1.3.0.2.ebuild | 44 ----------------------
dev-java/jgraphx/jgraphx-1.4.1.0.ebuild | 18 +++++----
dev-java/jgraphx/jgraphx-1.4.1.2.ebuild | 44 ----------------------
dev-java/jgraphx/jgraphx-1.8.0.6.ebuild | 20 ++++++----
dev-java/jgraphx/metadata.xml | 4 +-
dev-libs/asmjit/ChangeLog | 8 +++-
dev-libs/asmjit/Manifest | 2 +-
...-1.0_beta_p2.ebuild => asmjit-1.0_beta4.ebuild} | 6 +--
dev-libs/asmjit/metadata.xml | 12 +++---
media-gfx/librecad/ChangeLog | 3 ++
media-gfx/librecad/librecad-9999.ebuild | 21 +++++------
profiles/arch/amd64/no-multilib/package.mask | 27 -------------
profiles/arch/amd64/package.use.mask | 23 -----------
sci-biology/lastz/ChangeLog | 12 +++++-
sci-biology/lastz/Manifest | 3 +-
sci-biology/lastz/files/lastz-1.03.34-build.patch | 43 +++++++++++++++++++++
.../{lastz-1.02.00.ebuild => lastz-1.03.34.ebuild} | 28 ++++++++------
sci-biology/lastz/metadata.xml | 10 ++---
sci-biology/phylobayes/ChangeLog | 10 -----
sci-biology/phylobayes/Manifest | 2 -
sci-biology/phylobayes/metadata.xml | 9 -----
sci-biology/phylobayes/phylobayes-3.3b.ebuild | 37 ------------------
sci-chemistry/rosetta/ChangeLog | 7 ++++
sci-chemistry/rosetta/Manifest | 1 +
...-3.4-gcc4.7.patch => rosetta-3.4-gcc4.78.patch} | 2 +-
.../rosetta/files/rosetta-3.4-lange-fix.patch | 22 +++++++++++
sci-chemistry/rosetta/metadata.xml | 1 +
sci-chemistry/rosetta/rosetta-3.4.ebuild | 21 ++++++++---
sys-cluster/modules/modules-3.2.9c-r1.ebuild | 2 +-
32 files changed, 185 insertions(+), 311 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-06-13 7:08 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-13 7:08 UTC (permalink / raw
To: gentoo-commits
commit: 0944dd9ae2211da33b30cfb52496b342575640ed
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Jun 13 07:07:55 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Jun 13 07:07:55 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0944dd9a
Merge branch 'master' into ccp4
* master: (34 commits)
Package dropped Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-astronomy/galfit-bin: Fix license
sci-astronomy/eazy: Fix license
sci-astronomy/bpz: Bump to EAPI=5 and python-single-r1; restrict license
dev-tcltk/img_rotate: Bump to EAPI=5 and fix license
dev-python/inference: Bump to EAPI=5 and distutils-r1.eclass; make license more restrictive as we cannot check it right now
sci-libs/blastdb: Add missing build dep; fix license
x11-libs/xview-bin: Drop all keywords
sci-biology/pybrain: Bump to EAPI=5 and distutils-r1.eclass
sys-cluster/lustre: Move virtual/linux-sources to build deps
sci-mathematics/cadabra: Drop old, move doxygen to build deps
sci-libs/ipopt: Fix local USE description
sci-libs/ipopt: Version bump
fixed as-needed
sci-chemistry/hydronmr: Drop empty last line
sci-biology/ncbi-tools++: Drop empty line
sci-chemistry/ball: Bump EAPI and python eclass
sci-libs/trilinos: Drop old, fix handling of qt support
Merge live ebuilds on top drop unversioned "mask for testing" drop obsolete Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-libs/coinhsl: Initial import
...
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
Conflicts:
sci-chemistry/sfcheck/metadata.xml
dev-python/inference/ChangeLog | 7 +-
dev-python/inference/inference-0.4.ebuild | 31 +--
dev-python/inference/metadata.xml | 4 +-
dev-tcltk/img_rotate/ChangeLog | 6 +-
dev-tcltk/img_rotate/Manifest | 2 +-
dev-tcltk/img_rotate/img_rotate-1.1.ebuild | 14 +-
dev-tcltk/img_rotate/metadata.xml | 8 +-
licenses/HSL | 222 +++++++++++++++++++++
profiles/package.mask | 113 +++--------
sci-astronomy/bpz/ChangeLog | 5 +-
sci-astronomy/bpz/bpz-1.99.3.ebuild | 57 +++---
sci-astronomy/bpz/metadata.xml | 4 +-
sci-astronomy/eazy/ChangeLog | 5 +-
sci-astronomy/eazy/eazy-1.00.ebuild | 16 +-
sci-astronomy/eazy/metadata.xml | 4 +-
sci-astronomy/galfit-bin/ChangeLog | 3 +
sci-astronomy/galfit-bin/galfit-bin-3.0.4.ebuild | 6 +-
sci-biology/ncbi-tools++/ChangeLog | 6 +
.../ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild | 3 +-
sci-biology/pybrain/ChangeLog | 6 +-
sci-biology/pybrain/metadata.xml | 2 +-
sci-biology/pybrain/pybrain-9999.ebuild | 25 ++-
sci-chemistry/ball/ChangeLog | 3 +
sci-chemistry/ball/ball-9999.ebuild | 11 +-
sci-chemistry/ball/metadata.xml | 2 +-
sci-chemistry/hydronmr/ChangeLog | 3 +
sci-chemistry/hydronmr/hydronmr-7c.ebuild | 1 -
sci-libs/blastdb/ChangeLog | 8 +
sci-libs/blastdb/blastdb-9999.ebuild | 8 +-
sci-libs/blastdb/metadata.xml | 31 +--
sci-libs/coinhsl/ChangeLog | 12 ++
sci-libs/coinhsl/Manifest | 1 +
sci-libs/coinhsl/coinhsl-2012.12.21.ebuild | 36 ++++
sci-libs/coinhsl/metadata.xml | 12 ++
sci-libs/ipopt/ChangeLog | 9 +
sci-libs/ipopt/Manifest | 2 +-
.../{ipopt-3.10.3.ebuild => ipopt-3.11.0.ebuild} | 19 +-
sci-libs/ipopt/metadata.xml | 11 +-
sci-libs/trilinos/ChangeLog | 4 +
sci-libs/trilinos/Manifest | 1 -
sci-libs/trilinos/trilinos-10.10.1.ebuild | 124 ------------
sci-libs/trilinos/trilinos-11.0.3.ebuild | 12 +-
sci-mathematics/algae/files/unbundle.patch | 41 ----
sci-mathematics/cadabra/ChangeLog | 5 +
sci-mathematics/cadabra/Manifest | 3 -
sci-mathematics/cadabra/cadabra-1.25.ebuild | 89 ---------
sci-mathematics/cadabra/cadabra-1.28.ebuild | 87 --------
sci-mathematics/cadabra/cadabra-1.29.ebuild | 87 --------
sci-mathematics/cadabra/cadabra-1.31.ebuild | 14 +-
sci-mathematics/cadabra/metadata.xml | 4 +-
sys-cluster/lustre/ChangeLog | 4 +
sys-cluster/lustre/lustre-9999.ebuild | 6 +-
sys-cluster/lustre/metadata.xml | 20 +-
x11-libs/xview-bin/ChangeLog | 3 +
x11-libs/xview-bin/xview-bin-3.2_p1428.ebuild | 2 +-
55 files changed, 540 insertions(+), 684 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-06-14 11:21 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-14 11:21 UTC (permalink / raw
To: gentoo-commits
commit: 3c71e81e85316ad2d2bcaf502153541cb9e6c865
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Jun 14 06:07:53 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Jun 14 06:07:53 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3c71e81e
Merge branch 'master' into ccp4
* master:
sci-astronomy/astrometry: Version bump. Rewrote the patches
manifests fixes
mpe2: main tree more up to date
dev-python/go-parser: Bump to EAPI=5 and distutils-r1.eclass
dev-python/fiat: Version Bump; Bump to EAPI=5 and distutils-r1.eclass
dev-python/coords: Bump to EAPI=5 and distutils-r1.eclass
dev-python/ffc: Version Bump; Bump to EAPI=5 and distutils-r1.eclass
dev-python/emcee: Version Bump; Bump to EAPI=5 and distutils-r1.eclass
Obsolete package Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
dev-python/dimensionful: Bump to EAPI=5 and distutils-r1.eclass
dev-python/cosmocalc: Bump to EAPI=5 and distutils-r1.eclass
dev-python/coards: VersionBump; Bump to EAPI=5 and distutils-r1.eclass; fix license
dev-python/astropy: Bump to EAPI=5 and distutils-r1.eclass
dev-python/GOGrapher: Bump to EAPI=5 and distutils-r1.eclass
dev-python/GOGrapher: Bump to EAPI=5 and distutils-r1.eclass
dev-python/GOGrapher: Bump to EAPI=5 and distutils-r1.eclass
app-benchmarks/numbench: Bump to EAPI=5 and distutils-r1.eclass
dev-python/astropysics: Bump to EAPI=5 and distutils-r1.eclass
app-doc/blacs-docs/Manifest | 2 +-
app-doc/blas-docs/Manifest | 6 +-
app-doc/lapack-docs/Manifest | 4 +-
app-doc/root-docs/Manifest | 5 -
app-text/dgs/Manifest | 2 +-
app-vim/freefem++-syntax/Manifest | 2 +-
dev-cpp/growler-arch/Manifest | 4 +-
dev-cpp/growler-core/Manifest | 2 +-
dev-cpp/growler-math/Manifest | 2 +-
dev-cpp/growler-thread/Manifest | 2 +-
dev-java/jeuclid-core/Manifest | 2 +-
dev-java/joda-convert/Manifest | 2 +-
dev-java/vecmath/Manifest | 4 +-
dev-libs/libunzip/Manifest | 2 +-
dev-libs/simclist/Manifest | 5 +-
dev-ml/mlgmpidl/Manifest | 6 +-
dev-ml/ocamlgraph/Manifest | 4 -
dev-perl/BTLib/Manifest | 2 +-
dev-perl/Lab-Instrument/Manifest | 2 +-
dev-perl/Lab-Tools/Manifest | 2 +-
dev-perl/Lab-VISA/Manifest | 2 +-
dev-perl/go-db-perl/Manifest | 2 +-
dev-perl/opal-client/Manifest | 2 +-
dev-python/coards/ChangeLog | 8 +-
dev-python/coards/Manifest | 2 +-
dev-python/coards/coards-0.2.2.ebuild | 22 -
dev-python/coards/coards-1.0.5.ebuild | 23 +
dev-python/coards/metadata.xml | 10 +-
dev-python/coords/ChangeLog | 6 +-
dev-python/coords/Manifest | 2 +-
dev-python/coords/coords-0.37.ebuild | 22 +-
dev-python/coords/metadata.xml | 4 +-
dev-python/cosmocalc/ChangeLog | 6 +-
dev-python/cosmocalc/Manifest | 2 +-
dev-python/cosmocalc/cosmocalc-0.1.2-r1.ebuild | 23 +-
dev-python/cosmocalc/metadata.xml | 4 +-
dev-python/dimensionful/ChangeLog | 6 +-
dev-python/dimensionful/dimensionful-9999.ebuild | 37 +-
dev-python/dimensionful/metadata.xml | 8 +-
dev-python/emcee/ChangeLog | 8 +-
dev-python/emcee/Manifest | 2 +-
dev-python/emcee/emcee-1.0.1.ebuild | 35 -
dev-python/emcee/emcee-1.2.0.ebuild | 27 +
dev-python/emcee/metadata.xml | 4 +-
dev-python/ffc/ChangeLog | 8 +-
dev-python/ffc/Manifest | 2 +-
dev-python/ffc/ffc-0.9.4.ebuild | 23 -
dev-python/ffc/ffc-1.2.0.ebuild | 18 +
dev-python/ffc/metadata.xml | 4 +-
dev-python/fiat/ChangeLog | 8 +-
dev-python/fiat/Manifest | 2 +-
.../fiat/{fiat-0.9.2.ebuild => fiat-1.1.ebuild} | 14 +-
dev-python/fiat/metadata.xml | 4 +-
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dev-python/go-parser/Manifest | 2 +-
dev-python/go-parser/go-parser-9999.ebuild | 13 +-
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dev-python/numpydoc/Manifest | 2 +-
dev-python/omniorbpy/Manifest | 2 +-
dev-python/opal-client/Manifest | 2 +-
dev-python/pyhdf/Manifest | 2 +-
dev-python/pythoncgns/Manifest | 2 +-
dev-python/ufl/Manifest | 2 +-
dev-python/viper/Manifest | 2 +-
dev-tcltk/togl/Manifest | 2 +-
dev-util/smartgit/Manifest | 2 +-
media-libs/OpenMOIV/Manifest | 2 +-
media-libs/avbin-bin/Manifest | 4 +-
media-libs/libgfx/Manifest | 2 +-
net-firewall/gcb/Manifest | 2 +-
net-ftp/bbftp-client/Manifest | 2 +-
net-ftp/bbftp-server/Manifest | 2 +-
net-misc/bbscp/Manifest | 2 +-
net-misc/dhcp/ChangeLog | 61 --
net-misc/dhcp/Manifest | 1 -
net-misc/dhcp/dhcp-4.2.3_p2-r1.ebuild | 245 -------
net-misc/dhcp/files/dhcp-3.0-fix-perms.patch | 15 -
net-misc/dhcp/files/dhcp-3.0.3-dhclient-dbus.patch | 84 ---
.../dhcp/files/dhcp-3.0.3-dhclient-no-down.patch | 70 --
net-misc/dhcp/files/dhcp-4.0-dhclient-ntp.patch | 216 -------
net-misc/dhcp/files/dhcp-4.2.0-PPP.patch | 150 -----
.../dhcp/files/dhcp-4.2.0-errwarn-message.patch | 31 -
.../dhcp/files/dhcp-4.2.2-bind-build-flags.patch | 14 -
net-misc/dhcp/files/dhcp-4.2.2-bind-disable.patch | 13 -
.../files/dhcp-4.2.2-bind-parallel-build.patch | 14 -
.../files/dhcp-4.2.2-dhclient-resolvconf.patch | 409 ------------
.../files/dhcp-4.2.2-dhclient-stdin-conf.patch | 113 ----
net-misc/dhcp/files/dhcp-4.2.2-gpxe-cid.patch | 132 ----
net-misc/dhcp/files/dhcp-4.2.2-improved-xid.patch | 138 ----
net-misc/dhcp/files/dhcp-4.2.2-lpf-ib.patch | 538 ----------------
net-misc/dhcp/files/dhcp-4.2.2-nogateway.patch | 46 --
net-misc/dhcp/files/dhcp-4.2.2-xen-checksum.patch | 249 --------
net-misc/dhcp/files/dhcp-4.2.3-options.patch | 391 ------------
net-misc/dhcp/files/dhcpd.conf2 | 28 -
net-misc/dhcp/files/dhcpd.init2 | 94 ---
net-misc/dhcp/files/dhcpd.init5 | 114 ----
net-misc/dhcp/files/dhcrelay.conf | 13 -
net-misc/dhcp/files/dhcrelay.init2 | 29 -
net-misc/dhcp/metadata.xml | 10 -
perl-core/encoding-warnings/Manifest | 2 +-
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sci-astronomy/astrometry/astrometry-0.38.ebuild | 57 --
sci-astronomy/astrometry/astrometry-0.43.ebuild | 71 +++
.../astrometry/files/0.38-array-bounds.patch | 11 -
.../astrometry/files/0.38-as-needed.patch | 694 --------------------
.../astrometry/files/0.38-missing-headers.patch | 11 -
.../astrometry/files/0.38-strict-aliasing.patch | 30 -
.../astrometry/files/0.38-system-libs.patch | 48 --
.../astrometry/files/0.43-as-needed.patch | 366 +++++++++++
...r-flags.patch => 0.43-respect-user-flags.patch} | 3 +
.../astrometry/files/0.43-system-libs.patch | 704 +++++++++++++++++++++
sci-astronomy/astrometry/metadata.xml | 4 +-
sci-biology/ONTO-PERL/Manifest | 2 +-
sci-biology/align_to_scf/Manifest | 2 +-
sci-biology/amos-short/Manifest | 2 +-
sci-biology/argo-bin/Manifest | 2 +-
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sci-biology/autoeditor/Manifest | 4 +-
sci-biology/bambus/Manifest | 2 +-
sci-biology/brat/Manifest | 2 +-
sci-biology/caftools/Manifest | 4 +-
sci-biology/cap3-bin/Manifest | 4 +-
sci-biology/cdbfasta/Manifest | 2 +-
sci-biology/clover/Manifest | 4 +-
sci-biology/clview/Manifest | 4 +-
sci-biology/codonw/Manifest | 2 +-
sci-biology/dawg/Manifest | 2 +-
sci-biology/embassy-cbstools/Manifest | 2 +-
sci-biology/embassy-domainatrix/Manifest | 2 +-
sci-biology/embassy-domalign/Manifest | 2 +-
sci-biology/embassy-domsearch/Manifest | 2 +-
sci-biology/embassy-emnu/Manifest | 2 +-
sci-biology/embassy-esim4/Manifest | 2 +-
sci-biology/embassy-hmmer/Manifest | 2 +-
sci-biology/embassy-iprscan/Manifest | 2 +-
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sci-biology/embassy-phylipnew/Manifest | 2 +-
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sci-biology/embassy-structure/Manifest | 2 +-
sci-biology/embassy-topo/Manifest | 2 +-
sci-biology/embassy-vienna/Manifest | 2 +-
sci-biology/erpin/Manifest | 4 +-
sci-biology/est2uni/Manifest | 10 +-
sci-biology/fastdnaml/Manifest | 4 +-
sci-biology/gap2caf/Manifest | 4 +-
sci-biology/gbench/Manifest | 2 +-
sci-biology/genepop/Manifest | 2 +-
sci-biology/generecon/Manifest | 2 +-
sci-biology/genseed/Manifest | 2 +-
sci-biology/grappa/Manifest | 2 +-
sci-biology/jalview/Manifest | 2 +-
sci-biology/lucy/Manifest | 2 +-
sci-biology/mavid/Manifest | 2 +-
sci-biology/merlin/Manifest | 2 +-
sci-biology/miranda/Manifest | 2 +-
sci-biology/mrbayes/Manifest | 2 +-
sci-biology/mreps/Manifest | 2 +-
sci-biology/mrfast/Manifest | 2 +-
sci-biology/mrsfast/Manifest | 2 +-
sci-biology/nrcl/Manifest | 4 +-
sci-biology/perlprimer/Manifest | 2 +-
sci-biology/proda/Manifest | 2 +-
sci-biology/psx/Manifest | 2 +-
sci-biology/quicktree/Manifest | 2 +-
sci-biology/rnaplex/Manifest | 2 +-
sci-biology/roche454ace2caf/Manifest | 2 +-
sci-biology/sclust/Manifest | 4 +-
sci-biology/sequin/Manifest | 4 +-
sci-biology/sff_dump/Manifest | 2 +-
sci-biology/signalp/Manifest | 2 +-
sci-biology/smalt-bin/Manifest | 2 +-
sci-biology/ssaha2-bin/Manifest | 10 +-
sci-biology/swissknife/Manifest | 2 +-
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sci-biology/tclust/Manifest | 4 +-
sci-biology/tgicl/Manifest | 2 +-
sci-biology/tigr-assembler/Manifest | 2 +-
sci-biology/tigr-foundation-libs/Manifest | 2 +-
sci-biology/tmhmm/Manifest | 2 +-
sci-biology/twinscan/Manifest | 2 +-
sci-biology/zmsort/Manifest | 4 +-
sci-chemistry/almost/Manifest | 2 +-
sci-chemistry/bist/Manifest | 2 +-
sci-chemistry/cnsface/Manifest | 2 +-
sci-chemistry/direx/Manifest | 2 +-
sci-chemistry/drawxtl/Manifest | 4 +-
sci-chemistry/dssp2pdb/Manifest | 2 +-
sci-chemistry/jana2000/Manifest | 2 +-
sci-chemistry/jmol/Manifest | 2 +-
sci-chemistry/mage/Manifest | 2 +-
sci-chemistry/modeller/Manifest | 2 +-
sci-chemistry/mtz2hkl/Manifest | 2 +-
sci-chemistry/mtz2sca/Manifest | 2 +-
sci-chemistry/phaser/Manifest | 2 +-
sci-chemistry/polygon/Manifest | 4 +-
sci-chemistry/pyquante/Manifest | 2 +-
sci-chemistry/rosetta-tools/Manifest | 2 +-
sci-chemistry/shiftx/Manifest | 2 +-
sci-chemistry/smmp/Manifest | 2 +-
sci-chemistry/unio/Manifest | 4 +-
sci-electronics/player/Manifest | 2 +-
sci-electronics/stage/Manifest | 2 +-
sci-electronics/tnt/Manifest | 2 +-
sci-geosciences/cdat-lite/Manifest | 4 +-
sci-geosciences/congen/Manifest | 2 +-
.../harmonics-dwf-free-noncomm/Manifest | 2 +-
sci-geosciences/harmonics-dwf-free/Manifest | 4 +-
sci-geosciences/libtcd/Manifest | 4 +-
sci-geosciences/seawater/Manifest | 2 +-
sci-geosciences/swmm/Manifest | 2 +-
sci-geosciences/tappy/Manifest | 2 +-
sci-geosciences/tcd-utils/Manifest | 4 +-
sci-geosciences/xtide/Manifest | 4 +-
sci-libs/calculix-cgx/Manifest | 4 +-
sci-libs/cgnsfoam/Manifest | 2 +-
sci-libs/cgnslib/Manifest | 2 +-
sci-libs/cnsface-scripts/Manifest | 2 +-
sci-libs/dcmtk/Manifest | 6 +-
sci-libs/driftwood/Manifest | 2 +-
sci-libs/etsf_io/Manifest | 2 +-
sci-libs/factory/Manifest | 2 +-
sci-libs/fgsl/Manifest | 4 +-
sci-libs/fox/Manifest | 12 +-
sci-libs/fplll/Manifest | 2 +-
sci-libs/framewave/Manifest | 2 +-
sci-libs/geom/Manifest | 2 +-
sci-libs/givaro/Manifest | 4 +-
sci-libs/libcgnsoo/Manifest | 2 +-
sci-libs/libfac/Manifest | 4 +-
sci-libs/libxc/Manifest | 2 +-
sci-libs/lwpr/Manifest | 2 +-
sci-libs/m4ri/Manifest | 4 +-
sci-libs/matio/Manifest | 2 +-
sci-libs/mesquite/Manifest | 2 +-
sci-libs/ni-visa/Manifest | 2 +-
sci-libs/oasa/Manifest | 2 +-
sci-libs/omalloc/Manifest | 2 +-
sci-libs/symmetrica/Manifest | 2 +-
sci-libs/trilinos/Manifest | 1 +
sci-libs/trilinos/metadata.xml | 56 +-
sci-mathematics/Oid/Manifest | 4 +-
sci-mathematics/acl2/Manifest | 2 +-
sci-mathematics/apron/Manifest | 5 +-
sci-mathematics/aribas/Manifest | 2 +-
sci-mathematics/axiom/Manifest | 2 +-
sci-mathematics/burrtools/Manifest | 4 +-
sci-mathematics/dolfin/Manifest | 2 +-
sci-mathematics/frama-c/Manifest | 3 -
sci-mathematics/gap-guava/Manifest | 2 +-
sci-mathematics/gap/Manifest | 4 +-
sci-mathematics/gappa/Manifest | 3 -
sci-mathematics/htk/Manifest | 4 +-
sci-mathematics/kayali/Manifest | 2 +-
sci-mathematics/libsfmt/Manifest | 2 +-
sci-mathematics/lie/Manifest | 2 +-
sci-mathematics/ltl2ba/Manifest | 25 +-
sci-mathematics/netgen/Manifest | 2 +-
sci-mathematics/open-axiom/Manifest | 2 +-
sci-mathematics/pest/Manifest | 6 +-
sci-mathematics/ufc/Manifest | 2 +-
sci-misc/finomaton/Manifest | 2 +-
sci-misc/fitscut/Manifest | 2 +-
sci-misc/jwnl/Manifest | 4 +-
sci-misc/kotus-sanalista/Manifest | 2 +-
sci-misc/nltk/Manifest | 2 +-
sci-misc/omorfi/Manifest | 2 +-
sci-misc/opennlp-maxent/Manifest | 2 +-
sci-misc/opennlp-tools/Manifest | 88 +--
sci-misc/pywordnet/Manifest | 2 +-
sci-misc/salome-kernel/Manifest | 4 +-
sci-misc/salome-pycalculator/Manifest | 4 +-
sci-misc/stanford-parser/Manifest | 2 +-
sci-misc/stanford-tagger/Manifest | 2 +-
sci-physics/qcl/Manifest | 8 +-
sci-visualization/nodemon/Manifest | 2 +-
sys-cluster/condor/ChangeLog | 40 --
sys-cluster/condor/Manifest | 2 -
sys-cluster/condor/condor-7.5.2.ebuild | 160 -----
sys-cluster/condor/condor-7.5.4.ebuild | 160 -----
sys-cluster/condor/files/condor.confd | 2 -
sys-cluster/condor/files/condor.initd | 64 --
sys-cluster/condor/files/condor_config.local | 11 -
sys-cluster/condor/metadata.xml | 26 -
sys-cluster/ganglia_jobmonarch/Manifest | 2 +-
sys-cluster/mpe2/ChangeLog | 15 -
sys-cluster/mpe2/Manifest | 1 -
.../files/slog2sdk-trace_rlog-makefile-fixes.patch | 68 --
.../slog2sdk-trace_sample-makefile-fixes.patch | 68 --
sys-cluster/mpe2/metadata.xml | 10 -
sys-cluster/mpe2/mpe2-1.0.6_p1.ebuild | 148 -----
sys-cluster/nullmpi/Manifest | 2 +-
sys-cluster/pyslice/Manifest | 2 +-
sys-devel/gdebugger/Manifest | 4 +-
sys-infiniband/librxe/Manifest | 2 +-
x11-libs/tr/Manifest | 2 +-
298 files changed, 1674 insertions(+), 5428 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-06-16 14:23 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-16 14:23 UTC (permalink / raw
To: gentoo-commits
commit: 23df69597a2cfcc76d8369e2d8bf66e865f66edd
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 16 11:31:58 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jun 16 11:31:58 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=23df6959
Merge branch 'master' into ccp4
* master: (35 commits)
Update license Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/caftools: Drop old; Bump to EAPI=5 and fix license
New license Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/YASRA: Version BUmp; add KEYWORDS
sci-biology/tablet-bin: Version BUmp; BUmp to EAPI5 and python-r1.eclass; drop addpredict
sci-chemistry/modeller: Version BUmp; BUmp to EAPI5 and distutils-r1.eclass
sci-chemistry/cnsface: Bump to EAPI5 and distutils-r1.eclass
sci-chemistry/chemBuild: Bump EAPI and python eclass
sci-biology/tablet-bin: Version BUmp; BUmp to EAPI5 and python-r1.eclass
Drop the license again Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
tablet's modified for of BSD license Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/cutadapt: Version BUmp; BUmp to EAPI5 and distutils-r1.eclass
dev-python/opal-client: Version BUmp; BUmp to EAPI5 and python-r1.eclass
x11-misc/envytools: Fix license
sci-astronomy/astrometry: Fix unquoted variable
sci-physics/espresso: Bump to EAPI=5 and drop KEYWORDS of live ebuilds; bump to new python eclasses
sci-physics/espresso++: Bump to EAPI=5 and drop KEYWORDS of live ebuilds; bump to new python eclasses
sci-visualization/gnuplot: Drop KEYWORDS of live ebuilds
sys-cluster/nullmpi: Drop KEYWORDS of live ebuilds
sci-astronomy/scamp: Drop KEYWORDS of live ebuilds
...
dev-python/opal-client/ChangeLog | 8 +-
dev-python/opal-client/Manifest | 2 +-
dev-python/opal-client/metadata.xml | 8 +-
dev-python/opal-client/opal-client-2.2-r1.ebuild | 55 -------------
dev-python/opal-client/opal-client-2.4.1.ebuild | 42 ++++++++++
licenses/GRL | 15 ++++
licenses/Tablet | 8 +-
sci-biology/YASRA/ChangeLog | 4 +
sci-biology/YASRA/Manifest | 2 +-
.../YASRA/{YASRA-2.1.ebuild => YASRA-2.32.ebuild} | 15 +---
sci-biology/caftools/ChangeLog | 8 ++
sci-biology/caftools/Manifest | 4 +-
sci-biology/caftools/caftools-2.0.2.ebuild | 36 ++++----
sci-biology/caftools/caftools-2.0.ebuild | 38 ---------
sci-biology/caftools/metadata.xml | 16 ++--
sci-biology/cutadapt/ChangeLog | 6 +-
sci-biology/cutadapt/Manifest | 2 +-
.../{cutadapt-1.0.ebuild => cutadapt-1.2.1.ebuild} | 13 ++-
sci-biology/cutadapt/metadata.xml | 10 +--
sci-biology/tablet-bin/ChangeLog | 9 +-
sci-biology/tablet-bin/Manifest | 3 +-
sci-biology/tablet-bin/metadata.xml | 10 +--
.../tablet-bin/tablet-bin-1.11.11.01.ebuild | 73 ----------------
...1.05.03.ebuild => tablet-bin-1.13.05.17.ebuild} | 57 +++++++++----
sci-chemistry/chemBuild/ChangeLog | 6 +-
sci-chemistry/chemBuild/chemBuild-1.0.2.ebuild | 33 +++-----
sci-chemistry/chemBuild/files/chemBuild | 2 +-
sci-chemistry/chemBuild/metadata.xml | 2 +-
sci-chemistry/cnsface/ChangeLog | 6 +-
sci-chemistry/cnsface/Manifest | 2 +-
sci-chemistry/cnsface/cnsface-0.0.12.ebuild | 19 ++---
sci-chemistry/cnsface/metadata.xml | 8 +-
sci-chemistry/modeller/ChangeLog | 6 +-
sci-chemistry/modeller/Manifest | 2 +-
sci-chemistry/modeller/metadata.xml | 2 +-
.../{modeller-9.8.ebuild => modeller-9.12.ebuild} | 96 ++++++++++------------
36 files changed, 278 insertions(+), 350 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-06-16 14:23 [gentoo-commits] proj/sci:fixing " Justin Lecher
@ 2013-06-16 14:23 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-16 14:23 UTC (permalink / raw
To: gentoo-commits
commit: 2e9cea16376950c1a30a2bb3a7096327d1070f1b
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 16 11:31:24 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jun 16 11:31:24 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2e9cea16
Merge branch 'fixing'
* fixing:
Update license Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/caftools: Drop old; Bump to EAPI=5 and fix license
New license Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/YASRA: Version BUmp; add KEYWORDS
sci-biology/tablet-bin: Version BUmp; BUmp to EAPI5 and python-r1.eclass; drop addpredict
sci-chemistry/modeller: Version BUmp; BUmp to EAPI5 and distutils-r1.eclass
sci-chemistry/cnsface: Bump to EAPI5 and distutils-r1.eclass
sci-chemistry/chemBuild: Bump EAPI and python eclass
sci-biology/tablet-bin: Version BUmp; BUmp to EAPI5 and python-r1.eclass
Drop the license again Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
tablet's modified for of BSD license Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/cutadapt: Version BUmp; BUmp to EAPI5 and distutils-r1.eclass
dev-python/opal-client: Version BUmp; BUmp to EAPI5 and python-r1.eclass
dev-python/opal-client/ChangeLog | 8 +-
dev-python/opal-client/Manifest | 2 +-
dev-python/opal-client/metadata.xml | 8 +-
dev-python/opal-client/opal-client-2.2-r1.ebuild | 55 -------------
dev-python/opal-client/opal-client-2.4.1.ebuild | 42 ++++++++++
licenses/GRL | 15 ++++
licenses/Tablet | 8 +-
sci-biology/YASRA/ChangeLog | 4 +
sci-biology/YASRA/Manifest | 2 +-
.../YASRA/{YASRA-2.1.ebuild => YASRA-2.32.ebuild} | 15 +---
sci-biology/caftools/ChangeLog | 8 ++
sci-biology/caftools/Manifest | 4 +-
sci-biology/caftools/caftools-2.0.2.ebuild | 36 ++++----
sci-biology/caftools/caftools-2.0.ebuild | 38 ---------
sci-biology/caftools/metadata.xml | 16 ++--
sci-biology/cutadapt/ChangeLog | 6 +-
sci-biology/cutadapt/Manifest | 2 +-
.../{cutadapt-1.0.ebuild => cutadapt-1.2.1.ebuild} | 13 ++-
sci-biology/cutadapt/metadata.xml | 10 +--
sci-biology/tablet-bin/ChangeLog | 9 +-
sci-biology/tablet-bin/Manifest | 3 +-
sci-biology/tablet-bin/metadata.xml | 10 +--
.../tablet-bin/tablet-bin-1.11.11.01.ebuild | 73 ----------------
...1.05.03.ebuild => tablet-bin-1.13.05.17.ebuild} | 57 +++++++++----
sci-chemistry/chemBuild/ChangeLog | 6 +-
sci-chemistry/chemBuild/chemBuild-1.0.2.ebuild | 33 +++-----
sci-chemistry/chemBuild/files/chemBuild | 2 +-
sci-chemistry/chemBuild/metadata.xml | 2 +-
sci-chemistry/cnsface/ChangeLog | 6 +-
sci-chemistry/cnsface/Manifest | 2 +-
sci-chemistry/cnsface/cnsface-0.0.12.ebuild | 19 ++---
sci-chemistry/cnsface/metadata.xml | 8 +-
sci-chemistry/modeller/ChangeLog | 6 +-
sci-chemistry/modeller/Manifest | 2 +-
sci-chemistry/modeller/metadata.xml | 2 +-
.../{modeller-9.8.ebuild => modeller-9.12.ebuild} | 96 ++++++++++------------
36 files changed, 278 insertions(+), 350 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-06-16 15:53 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-16 15:53 UTC (permalink / raw
To: gentoo-commits
commit: b9353507412d6956fb46781c7b44713829b128d8
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 16 15:46:14 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jun 16 15:46:14 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b9353507
Merge branch 'fixing' into ccp4
* fixing:
sci-chemistry/pymol-plugins-psico: Bump to EAPI=5 and
distutils-r1.eclass
sci-chemistry/smmp: Bump to EAPI=5 and python-r1.eclass
sci-chemistry/specView: Bump to EAPI=5 and python-single-r1.eclass
sci-chemistry/pyquante: Bump to EAPI=5 and distutils-r1.eclass
sci-chemistry/pymol-apbs-plugin: Drop KEYWORDS from live ebuild
sci-chemistry/pymol-apbs-plugin: Bump to EAPI=5 and bump to
python-r1.eclass
broken Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-chemistry/nmrpipe: Bump to EAPI=5 and fix license
sci-chemistry/nwchem: Drop old; drop virtual/fortran as the eclass
depends on it
sci-chemistry/ssp: Bump to EAPI=5 and fix license
sci-chemistry/shiftx: Bump to EAPI=5 and fix license
sci-chemistry/pymol-plugins-ezviz: Bump to EAPI=5 and bump to
python-r1.eclass
sci-chemistry/polygon: Version BUmp; fixed license
sci-chemistry/nmrview: Bump to EAPI=5 and fix license
Conflicts:
sci-chemistry/phaser/phaser-2.5.0.ebuild
sci-chemistry/nmrview/ChangeLog | 6 +-
sci-chemistry/nmrview/metadata.xml | 10 +-
sci-chemistry/nmrview/nmrview-5.2.2-r3.ebuild | 15 +--
sci-chemistry/nwchem/ChangeLog | 4 +
sci-chemistry/nwchem/Manifest | 1 -
sci-chemistry/nwchem/nwchem-6.1.1.ebuild | 126 ---------------------
sci-chemistry/nwchem/nwchem-6.3.ebuild | 10 +-
sci-chemistry/polygon/ChangeLog | 7 +-
sci-chemistry/polygon/Manifest | 4 +-
.../polygon/files/{0710-db.patch => 0612-db.patch} | 20 ++--
sci-chemistry/polygon/metadata.xml | 8 +-
.../{polygon-0710.ebuild => polygon-0612.ebuild} | 18 ++-
sci-chemistry/pymol-apbs-plugin/ChangeLog | 9 +-
sci-chemistry/pymol-apbs-plugin/metadata.xml | 8 +-
.../pymol-apbs-plugin-9999.ebuild | 53 ++++-----
sci-chemistry/pymol-plugins-ezviz/ChangeLog | 4 +
sci-chemistry/pymol-plugins-ezviz/Manifest | 2 +-
.../pymol-plugins-ezviz-1.0.2005.ebuild | 56 ++++-----
sci-chemistry/pymol-plugins-psico/ChangeLog | 3 +
.../pymol-plugins-psico-9999.ebuild | 15 +--
sci-chemistry/pyquante/ChangeLog | 6 +-
sci-chemistry/pyquante/Manifest | 2 +-
sci-chemistry/pyquante/metadata.xml | 2 +-
sci-chemistry/pyquante/pyquante-1.6.3-r1.ebuild | 11 +-
sci-chemistry/shiftx/ChangeLog | 5 +-
sci-chemistry/shiftx/Manifest | 2 +-
sci-chemistry/shiftx/metadata.xml | 8 +-
sci-chemistry/shiftx/shiftx-1.1.ebuild | 24 ++--
sci-chemistry/smmp/ChangeLog | 5 +-
sci-chemistry/smmp/Manifest | 2 +-
sci-chemistry/smmp/metadata.xml | 8 +-
sci-chemistry/smmp/smmp-3.0.5.ebuild | 41 +++----
sci-chemistry/specView/ChangeLog | 3 +
sci-chemistry/specView/specView-1.0.2.ebuild | 52 +++------
sci-chemistry/ssp/ChangeLog | 5 +-
sci-chemistry/ssp/metadata.xml | 8 +-
sci-chemistry/ssp/ssp-09.11.ebuild | 6 +-
37 files changed, 211 insertions(+), 358 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-06-17 5:55 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-17 5:55 UTC (permalink / raw
To: gentoo-commits
commit: 574effd9590ac60471bebdc4225aaa87a727b8a5
Author: Sébastien Fabbro <bicatali <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 16 16:03:40 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jun 16 16:03:40 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=574effd9
Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
dev-python/opal-client/ChangeLog | 8 +-
dev-python/opal-client/Manifest | 2 +-
dev-python/opal-client/metadata.xml | 8 +-
dev-python/opal-client/opal-client-2.2-r1.ebuild | 55 --------
dev-python/opal-client/opal-client-2.4.1.ebuild | 42 +++++++
licenses/GRL | 15 +++
licenses/Tablet | 8 +-
sci-biology/YASRA/ChangeLog | 4 +
sci-biology/YASRA/Manifest | 2 +-
.../YASRA/{YASRA-2.1.ebuild => YASRA-2.32.ebuild} | 15 +--
sci-biology/caftools/ChangeLog | 8 ++
sci-biology/caftools/Manifest | 4 +-
sci-biology/caftools/caftools-2.0.2.ebuild | 36 +++---
sci-biology/caftools/caftools-2.0.ebuild | 38 ------
sci-biology/caftools/metadata.xml | 16 ++-
sci-biology/cutadapt/ChangeLog | 6 +-
sci-biology/cutadapt/Manifest | 2 +-
.../{cutadapt-1.0.ebuild => cutadapt-1.2.1.ebuild} | 13 +-
sci-biology/cutadapt/metadata.xml | 10 +-
sci-biology/tablet-bin/ChangeLog | 9 +-
sci-biology/tablet-bin/Manifest | 3 +-
sci-biology/tablet-bin/metadata.xml | 10 +-
.../tablet-bin/tablet-bin-1.11.11.01.ebuild | 73 -----------
...1.05.03.ebuild => tablet-bin-1.13.05.17.ebuild} | 57 ++++++---
sci-chemistry/chemBuild/ChangeLog | 6 +-
sci-chemistry/chemBuild/chemBuild-1.0.2.ebuild | 33 ++---
sci-chemistry/chemBuild/files/chemBuild | 2 +-
sci-chemistry/chemBuild/metadata.xml | 2 +-
sci-chemistry/cnsface/ChangeLog | 6 +-
sci-chemistry/cnsface/Manifest | 2 +-
sci-chemistry/cnsface/cnsface-0.0.12.ebuild | 19 ++-
sci-chemistry/cnsface/metadata.xml | 8 +-
sci-chemistry/modeller/ChangeLog | 6 +-
sci-chemistry/modeller/Manifest | 2 +-
sci-chemistry/modeller/metadata.xml | 2 +-
.../{modeller-9.8.ebuild => modeller-9.12.ebuild} | 96 +++++++-------
sci-chemistry/nmrpipe/ChangeLog | 8 ++
.../nmrpipe/nmrpipe-7.9.2013.021.23.09-r2.ebuild | 4 +-
sci-chemistry/nmrview/ChangeLog | 6 +-
sci-chemistry/nmrview/metadata.xml | 10 +-
sci-chemistry/nmrview/nmrview-5.2.2-r3.ebuild | 15 +--
sci-chemistry/nwchem/ChangeLog | 4 +
sci-chemistry/nwchem/Manifest | 1 -
sci-chemistry/nwchem/nwchem-6.1.1.ebuild | 126 -------------------
sci-chemistry/nwchem/nwchem-6.3.ebuild | 10 +-
sci-chemistry/phaser/ChangeLog | 21 ----
sci-chemistry/phaser/Manifest | 1 -
sci-chemistry/phaser/files/2.1.4-sadf.patch | 64 ----------
.../phaser/files/phaser-2.1.4-chmod.patch | 11 --
sci-chemistry/phaser/metadata.xml | 30 -----
sci-chemistry/phaser/phaser-2.1.4-r1.ebuild | 138 ---------------------
sci-chemistry/phaser/phaser-2.1.4.ebuild | 114 -----------------
sci-chemistry/polygon/ChangeLog | 7 +-
sci-chemistry/polygon/Manifest | 4 +-
.../polygon/files/{0710-db.patch => 0612-db.patch} | 20 +--
sci-chemistry/polygon/metadata.xml | 8 +-
.../{polygon-0710.ebuild => polygon-0612.ebuild} | 18 ++-
sci-chemistry/pymol-apbs-plugin/ChangeLog | 9 +-
sci-chemistry/pymol-apbs-plugin/metadata.xml | 8 +-
.../pymol-apbs-plugin-9999.ebuild | 53 +++-----
sci-chemistry/pymol-plugins-ezviz/ChangeLog | 4 +
sci-chemistry/pymol-plugins-ezviz/Manifest | 2 +-
.../pymol-plugins-ezviz-1.0.2005.ebuild | 56 ++++-----
sci-chemistry/pymol-plugins-psico/ChangeLog | 3 +
.../pymol-plugins-psico-9999.ebuild | 15 +--
sci-chemistry/pyquante/ChangeLog | 6 +-
sci-chemistry/pyquante/Manifest | 2 +-
sci-chemistry/pyquante/metadata.xml | 2 +-
sci-chemistry/pyquante/pyquante-1.6.3-r1.ebuild | 11 +-
sci-chemistry/shiftx/ChangeLog | 5 +-
sci-chemistry/shiftx/Manifest | 2 +-
sci-chemistry/shiftx/metadata.xml | 8 +-
sci-chemistry/shiftx/shiftx-1.1.ebuild | 24 ++--
sci-chemistry/smmp/ChangeLog | 5 +-
sci-chemistry/smmp/Manifest | 2 +-
sci-chemistry/smmp/metadata.xml | 8 +-
sci-chemistry/smmp/smmp-3.0.5.ebuild | 41 +++---
sci-chemistry/specView/ChangeLog | 3 +
sci-chemistry/specView/specView-1.0.2.ebuild | 52 +++-----
sci-chemistry/ssp/ChangeLog | 5 +-
sci-chemistry/ssp/metadata.xml | 8 +-
sci-chemistry/ssp/ssp-09.11.ebuild | 6 +-
82 files changed, 499 insertions(+), 1089 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-06-16 17:23 [gentoo-commits] proj/sci:master " Justin Lecher
@ 2013-06-17 5:55 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-17 5:55 UTC (permalink / raw
To: gentoo-commits
commit: 6fa652d6a78f49cc6734d72f07455cbc4fa215bd
Author: Justin <jlec <AT> j-schmitz <DOT> net>
AuthorDate: Sun Jun 16 17:01:33 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jun 16 17:01:33 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=6fa652d6
Merge pull request #82 from ercpe/ercpe
Enhanced the sci-chemistry/shiftx ebuild. Still needs some love for the ...
sci-chemistry/shiftx2/Manifest | 1 +
sci-chemistry/shiftx2/files/gentoo-fixes.patch | 194 +++++++++++++++++++++
sci-chemistry/shiftx2/metadata.xml | 57 +++---
.../shiftx2/shiftx2-1.07_p20120106.ebuild | 56 ++++--
4 files changed, 272 insertions(+), 36 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-06-17 5:55 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-17 5:55 UTC (permalink / raw
To: gentoo-commits
commit: 1e83a4dec123f72a098067d9b7fc003f45aeabbe
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 16 17:22:53 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jun 16 17:22:53 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1e83a4de
Merge branch 'ercpe'
* ercpe:
sci-chemistry/shiftx2: Respect FLAGS
Enhanced the sci-chemistry/shiftx ebuild. Still needs some love for the emake part (portage complains about LDFLAGS not respected), but should work.
broken ebuild for java fixing Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-chemistry/shiftx2/ChangeLog | 8 +
sci-chemistry/shiftx2/Manifest | 1 +
sci-chemistry/shiftx2/files/gentoo-fixes.patch | 194 +++++++++++++++++++++
sci-chemistry/shiftx2/metadata.xml | 39 +++++
.../shiftx2/shiftx2-1.07_p20120106.ebuild | 112 ++++++++++++
5 files changed, 354 insertions(+)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-06-17 5:55 [gentoo-commits] proj/sci:fixing " Justin Lecher
@ 2013-06-17 5:55 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-17 5:55 UTC (permalink / raw
To: gentoo-commits
commit: e1e48799c623338fedab433347c64dfce9b9aebe
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 16 20:18:52 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jun 16 20:18:52 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e1e48799
Merge branch 'fixing'
* fixing:
sci-biology/twinscan: Bump to EAPI=5 and fix license
sci-biology/ssaha2-bin: Version Bump; restrict license; add QA_PREBUILT for binaries
sci-biology/smalt-bin: Version Bump; restrict license; add QA_PREBUILT for binaries
sci-biology/sequin: Version BUmp; restrcit license; add QA_PREBUILT for binaries; install html files into sys path
sci-biology/quicktree: Bump to EAPI=5 and fix license
sci-biology/gap2caf: Bump to EAPI=5 and fix license; make it build with eautoreconf
sci-biology/erpin: Bump to EAPI=5 and respect FLAGS / AR
sci-biology/clover: Version BUmp; fixed license; respect LDFLAGS
sci-biology/clover/ChangeLog | 6 ++-
sci-biology/clover/Manifest | 4 +-
sci-biology/clover/clover-2010.02.19.ebuild | 43 ---------------------
sci-biology/clover/clover-2011.10.24.ebuild | 40 +++++++++++++++++++
sci-biology/clover/metadata.xml | 6 ++-
sci-biology/erpin/ChangeLog | 5 ++-
sci-biology/erpin/Manifest | 4 +-
sci-biology/erpin/erpin-5.5b.ebuild | 23 ++++++-----
sci-biology/erpin/metadata.xml | 10 ++---
sci-biology/gap2caf/ChangeLog | 8 ++++
sci-biology/gap2caf/Manifest | 4 +-
sci-biology/gap2caf/gap2caf-2.1.0.ebuild | 45 +++++++++++-----------
sci-biology/gap2caf/metadata.xml | 10 ++---
sci-biology/quicktree/ChangeLog | 6 ++-
sci-biology/quicktree/Manifest | 2 +-
sci-biology/quicktree/metadata.xml | 10 ++---
sci-biology/quicktree/quicktree-1.1-r1.ebuild | 17 ++++----
sci-biology/sequin/ChangeLog | 9 ++++-
sci-biology/sequin/Manifest | 4 +-
sci-biology/sequin/sequin-20090722.ebuild | 32 ---------------
sci-biology/sequin/sequin-20121202.ebuild | 44 +++++++++++++++++++++
sci-biology/smalt-bin/ChangeLog | 8 +++-
sci-biology/smalt-bin/Manifest | 2 +-
sci-biology/smalt-bin/metadata.xml | 10 ++---
sci-biology/smalt-bin/smalt-bin-0.5.1.ebuild | 25 ------------
sci-biology/smalt-bin/smalt-bin-0.7.4.ebuild | 31 +++++++++++++++
sci-biology/ssaha2-bin/ChangeLog | 6 ++-
sci-biology/ssaha2-bin/Manifest | 9 ++---
sci-biology/ssaha2-bin/metadata.xml | 10 ++---
...a2-bin-2.5.3.ebuild => ssaha2-bin-2.5.5.ebuild} | 26 ++++++++-----
sci-biology/twinscan/ChangeLog | 6 ++-
sci-biology/twinscan/Manifest | 2 +-
sci-biology/twinscan/metadata.xml | 10 ++---
sci-biology/twinscan/twinscan-4.1.2.ebuild | 30 ++++++++++-----
34 files changed, 292 insertions(+), 215 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-06-17 5:55 [gentoo-commits] proj/sci:fixing " Justin Lecher
@ 2013-06-17 5:55 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-17 5:55 UTC (permalink / raw
To: gentoo-commits
commit: 945c34bebc2ff7e4d3c1769c0c4320ee9a0a13dd
Author: Sébastien Fabbro <bicatali <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 16 20:57:33 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jun 16 20:57:33 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=945c34be
Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
sci-biology/clover/ChangeLog | 6 +-
sci-biology/clover/Manifest | 4 +-
sci-biology/clover/clover-2010.02.19.ebuild | 43 -----
sci-biology/clover/clover-2011.10.24.ebuild | 40 +++++
sci-biology/clover/metadata.xml | 6 +-
sci-biology/erpin/ChangeLog | 5 +-
sci-biology/erpin/Manifest | 4 +-
sci-biology/erpin/erpin-5.5b.ebuild | 23 +--
sci-biology/erpin/metadata.xml | 10 +-
sci-biology/gap2caf/ChangeLog | 8 +
sci-biology/gap2caf/Manifest | 4 +-
sci-biology/gap2caf/gap2caf-2.1.0.ebuild | 45 ++---
sci-biology/gap2caf/metadata.xml | 10 +-
sci-biology/quicktree/ChangeLog | 6 +-
sci-biology/quicktree/Manifest | 2 +-
sci-biology/quicktree/metadata.xml | 10 +-
sci-biology/quicktree/quicktree-1.1-r1.ebuild | 17 +-
sci-biology/sequin/ChangeLog | 9 +-
sci-biology/sequin/Manifest | 4 +-
sci-biology/sequin/sequin-20090722.ebuild | 32 ----
sci-biology/sequin/sequin-20121202.ebuild | 44 +++++
sci-biology/smalt-bin/ChangeLog | 8 +-
sci-biology/smalt-bin/Manifest | 2 +-
sci-biology/smalt-bin/metadata.xml | 10 +-
sci-biology/smalt-bin/smalt-bin-0.5.1.ebuild | 25 ---
sci-biology/smalt-bin/smalt-bin-0.7.4.ebuild | 31 ++++
sci-biology/ssaha2-bin/ChangeLog | 6 +-
sci-biology/ssaha2-bin/Manifest | 9 +-
sci-biology/ssaha2-bin/metadata.xml | 10 +-
...a2-bin-2.5.3.ebuild => ssaha2-bin-2.5.5.ebuild} | 26 +--
sci-biology/twinscan/ChangeLog | 6 +-
sci-biology/twinscan/Manifest | 2 +-
sci-biology/twinscan/metadata.xml | 10 +-
sci-biology/twinscan/twinscan-4.1.2.ebuild | 30 ++--
sci-chemistry/shiftx2/ChangeLog | 8 +
sci-chemistry/shiftx2/Manifest | 1 +
sci-chemistry/shiftx2/files/gentoo-fixes.patch | 194 +++++++++++++++++++++
sci-chemistry/shiftx2/metadata.xml | 39 +++++
.../shiftx2/shiftx2-1.07_p20120106.ebuild | 112 ++++++++++++
39 files changed, 646 insertions(+), 215 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-06-17 5:55 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-17 5:55 UTC (permalink / raw
To: gentoo-commits
commit: b26366da352ed3bf258da85228b0844317178372
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Jun 17 05:54:44 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jun 17 05:54:44 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b26366da
Merge branch 'master' into ccp4
* master:
add missing masks for live ebuilds
dev-python/healpy: Initial import
dev-java/jhealpix: Initial import
sci-astronomy/healpix_idl: Initial import
sci-astronomy/healpix_cxx: Initial import
sci-astronomy/chealpix: Initial import
sci-biology/twinscan: Bump to EAPI=5 and fix license
sci-biology/ssaha2-bin: Version Bump; restrict license; add QA_PREBUILT for binaries
sci-biology/smalt-bin: Version Bump; restrict license; add QA_PREBUILT for binaries
sci-biology/sequin: Version BUmp; restrcit license; add QA_PREBUILT for binaries; install html files into sys path
sci-biology/quicktree: Bump to EAPI=5 and fix license
sci-biology/gap2caf: Bump to EAPI=5 and fix license; make it build with eautoreconf
sci-biology/erpin: Bump to EAPI=5 and respect FLAGS / AR
sci-biology/clover: Version BUmp; fixed license; respect LDFLAGS
sci-chemistry/shiftx2: Respect FLAGS
Enhanced the sci-chemistry/shiftx ebuild. Still needs some love for the emake part (portage complains about LDFLAGS not respected), but should work.
broken ebuild for java fixing Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-astronomy/astrometry: Added extra use flag to plot
sci-astronomy/astrometry: Added python bindings. Fixed more gsl bundling
dev-java/jhealpix/ChangeLog | 9 +
dev-java/jhealpix/Manifest | 1 +
dev-java/jhealpix/jhealpix-3.11.ebuild | 43 ++++
dev-java/jhealpix/metadata.xml | 11 +
dev-python/healpy/ChangeLog | 9 +
dev-python/healpy/Manifest | 1 +
dev-python/healpy/healpy-1.6.2.ebuild | 34 ++++
dev-python/healpy/metadata.xml | 10 +
profiles/package.mask | 5 +
sci-astronomy/astrometry/ChangeLog | 7 +
sci-astronomy/astrometry/astrometry-0.43.ebuild | 40 ++--
.../astrometry/files/0.43-system-libs.patch | 226 ++++++++++++---------
sci-astronomy/astrometry/metadata.xml | 7 +-
sci-astronomy/chealpix/ChangeLog | 9 +
sci-astronomy/chealpix/Manifest | 1 +
sci-astronomy/chealpix/chealpix-3.11.ebuild | 30 +++
sci-astronomy/chealpix/metadata.xml | 11 +
sci-astronomy/healpix_cxx/ChangeLog | 9 +
sci-astronomy/healpix_cxx/Manifest | 1 +
sci-astronomy/healpix_cxx/healpix_cxx-3.11.ebuild | 54 +++++
sci-astronomy/healpix_cxx/metadata.xml | 12 ++
sci-astronomy/healpix_idl/ChangeLog | 9 +
sci-astronomy/healpix_idl/Manifest | 1 +
sci-astronomy/healpix_idl/healpix_idl-3.11.ebuild | 37 ++++
sci-astronomy/healpix_idl/metadata.xml | 12 ++
sci-biology/clover/ChangeLog | 6 +-
sci-biology/clover/Manifest | 4 +-
sci-biology/clover/clover-2010.02.19.ebuild | 43 ----
sci-biology/clover/clover-2011.10.24.ebuild | 40 ++++
sci-biology/clover/metadata.xml | 6 +-
sci-biology/erpin/ChangeLog | 5 +-
sci-biology/erpin/Manifest | 4 +-
sci-biology/erpin/erpin-5.5b.ebuild | 23 ++-
sci-biology/erpin/metadata.xml | 10 +-
sci-biology/gap2caf/ChangeLog | 8 +
sci-biology/gap2caf/Manifest | 4 +-
sci-biology/gap2caf/gap2caf-2.1.0.ebuild | 45 ++--
sci-biology/gap2caf/metadata.xml | 10 +-
sci-biology/quicktree/ChangeLog | 6 +-
sci-biology/quicktree/Manifest | 2 +-
sci-biology/quicktree/metadata.xml | 10 +-
sci-biology/quicktree/quicktree-1.1-r1.ebuild | 17 +-
sci-biology/sequin/ChangeLog | 9 +-
sci-biology/sequin/Manifest | 4 +-
sci-biology/sequin/sequin-20090722.ebuild | 32 ---
sci-biology/sequin/sequin-20121202.ebuild | 44 ++++
sci-biology/smalt-bin/ChangeLog | 8 +-
sci-biology/smalt-bin/Manifest | 2 +-
sci-biology/smalt-bin/metadata.xml | 10 +-
sci-biology/smalt-bin/smalt-bin-0.5.1.ebuild | 25 ---
sci-biology/smalt-bin/smalt-bin-0.7.4.ebuild | 31 +++
sci-biology/ssaha2-bin/ChangeLog | 6 +-
sci-biology/ssaha2-bin/Manifest | 9 +-
sci-biology/ssaha2-bin/metadata.xml | 10 +-
...a2-bin-2.5.3.ebuild => ssaha2-bin-2.5.5.ebuild} | 26 ++-
sci-biology/twinscan/ChangeLog | 6 +-
sci-biology/twinscan/Manifest | 2 +-
sci-biology/twinscan/metadata.xml | 10 +-
sci-biology/twinscan/twinscan-4.1.2.ebuild | 30 ++-
sci-chemistry/shiftx2/ChangeLog | 8 +
sci-chemistry/shiftx2/Manifest | 1 +
sci-chemistry/shiftx2/files/gentoo-fixes.patch | 194 ++++++++++++++++++
sci-chemistry/shiftx2/metadata.xml | 39 ++++
.../shiftx2/shiftx2-1.07_p20120106.ebuild | 112 ++++++++++
64 files changed, 1127 insertions(+), 323 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-06-18 8:54 [gentoo-commits] proj/sci:fixing " Justin Lecher
@ 2013-06-18 8:54 ` Justin Lecher
2013-06-19 6:53 ` Justin Lecher
1 sibling, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-18 8:54 UTC (permalink / raw
To: gentoo-commits
commit: 4c8b2b623e9305166c334d9c5d3d219cb6b78129
Author: Honza Macháček <Hloupy.Honza <AT> centrum <DOT> cz>
AuthorDate: Mon Jun 17 18:58:38 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jun 17 18:58:38 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=4c8b2b62
Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
Trying to commit a complex change of sci-physics/abinit and its libraries, I took some
time to put everything in pace so I have to pull some updates before puhing my work. Something
I do not fully understand is happening. If it breaks things I will try to clean up, as soon as
I understand the situation.
app-text/jabref/ChangeLog | 10 +++++
...jabref-2.10b.ebuild => jabref-2.10_beta.ebuild} | 8 +++-
media-gfx/librecad/ChangeLog | 6 +++
media-gfx/librecad/Manifest | 4 +-
media-gfx/librecad/files/1.0.0_rc2-gcc4.6.patch | 38 -----------------
.../files/librecad-1.0.0_rc2-version.patch | 11 -----
media-gfx/librecad/librecad-1.0.2.ebuild | 45 --------------------
media-gfx/librecad/librecad-2.0.0_beta5.ebuild | 48 ----------------------
media-gfx/librecad/librecad-2.0.0_rc1.ebuild | 27 ++++++------
media-gfx/librecad/metadata.xml | 23 ++++++-----
10 files changed, 48 insertions(+), 172 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-06-18 8:54 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-18 8:54 UTC (permalink / raw
To: gentoo-commits
commit: 60dfd44be307c024c87a971398740d48a0d2930c
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 18 05:42:32 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 18 05:42:32 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=60dfd44b
Merge branch 'master' into ccp4
* master:
Abinit & friends upgraded to sci-physics/abinit-7.2.2. BigDFT moved from sci-libs to sci-physics, sci-physics/abinit uses sci-libs/bigdft-abi instead. Usage of LIBDIR/finclude abandoned in favour of /usr/include, as mostly used upstream. Old files cleaned up.
Fixed bug in jabref ebuild.
Renamed ebuild to conform with Gentoo Ebuild Naming Convention (TM).
media-gfx/librecad: Cleanup and apply patch from bug #473388
Version of bigdft bumped to 1.7_pre24, moved from sci-libs to sci-physics. No longer used as a library by sci-physics/abinit. Usage of LIBDIR/finclude abandoned in favour of /usr/include, as used upstream.
Mangling of the sources of sci-chemistry/freeon reduced, both for 2012.05.03, and for 9999.
[sci-chemistry/nMOLDYN] Update deps
[sci-chemistry/nMOLDYN] Add to overlay
app-text/jabref/ChangeLog | 10 +
...jabref-2.10b.ebuild => jabref-2.10_beta.ebuild} | 8 +-
media-gfx/librecad/ChangeLog | 6 +
media-gfx/librecad/Manifest | 4 +-
media-gfx/librecad/files/1.0.0_rc2-gcc4.6.patch | 38 ---
.../files/librecad-1.0.0_rc2-version.patch | 11 -
media-gfx/librecad/librecad-1.0.2.ebuild | 45 ---
media-gfx/librecad/librecad-2.0.0_beta5.ebuild | 48 ---
media-gfx/librecad/librecad-2.0.0_rc1.ebuild | 27 +-
media-gfx/librecad/metadata.xml | 23 +-
sci-chemistry/freeon/ChangeLog | 9 +
...ch => freeon-2012.05.03-no_internal_hdf5.patch} | 32 +-
.../files/freeon-9999-no_internal_hdf5.patch | 25 ++
.../files/freeon-9999-no_internal_libs.patch | 47 ---
sci-chemistry/nMOLDYN/ChangeLog | 12 +
sci-chemistry/nMOLDYN/Manifest | 1 +
sci-chemistry/{trajng => nMOLDYN}/metadata.xml | 0
sci-chemistry/nMOLDYN/nMOLDYN-3.0.10.ebuild | 24 ++
sci-libs/bigdft-abi/ChangeLog | 12 +
sci-libs/bigdft-abi/Manifest | 3 +
.../bigdft-abi-1.0.4.ebuild} | 79 +++--
.../files/bigdft-abi-1.0.4-tests.tar.bz2 | Bin 0 -> 402968 bytes
sci-libs/etsf_io/ChangeLog | 9 +-
..._io-1.0.3-r1.ebuild => etsf_io-1.0.3-r2.ebuild} | 0
sci-libs/fox/ChangeLog | 10 +-
...patch => 4.1.2-r2-install-customizations.patch} | 0
.../{fox-4.1.2-r1.ebuild => fox-4.1.2-r2.ebuild} | 10 +-
sci-libs/libxc/ChangeLog | 11 +-
...libxc-1.1.0-r1.ebuild => libxc-1.2.0-r1.ebuild} | 26 +-
.../{libxc-1.2.0.ebuild => libxc-2.0.1.ebuild} | 27 +-
sci-libs/wannier90/ChangeLog | 7 +
...annier90-1.2.ebuild => wannier90-1.2-r1.ebuild} | 0
sci-physics/abinit/ChangeLog | 9 +
sci-physics/abinit/abinit-7.0.5.ebuild | 356 ---------------------
.../{abinit-7.0.4.ebuild => abinit-7.2.2.ebuild} | 75 +++--
sci-physics/abinit/files/6.0.3-fftw.patch | 14 -
.../abinit/files/6.12.1-libabinit_options.patch | 57 ----
sci-physics/abinit/files/6.12.3-gui-makefiles.tbz | Bin 14600 -> 0 bytes
sci-physics/atompaw/ChangeLog | 7 +
...aw-3.0.1.9.ebuild => atompaw-3.0.1.9-r1.ebuild} | 11 +-
{sci-libs => sci-physics}/bigdft/ChangeLog | 10 +-
.../bigdft/bigdft-1.7_pre24.ebuild | 35 +-
.../files/bigdft-1.7-dev.24-nolib_mods.patch | 14 +-
43 files changed, 357 insertions(+), 795 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-06-18 8:57 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-18 8:57 UTC (permalink / raw
To: gentoo-commits
commit: 3a3b096c76d8992f1528113f2d7f974ae02ad522
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 18 08:57:08 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 18 08:57:08 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3a3b096c
Merge branch 'master' into ccp4
* master:
sci-chemistry/mics: New package
sci-chemistry/talosn: New package
sci-chemistry/mics/ChangeLog | 10 ++++
sci-chemistry/mics/Manifest | 1 +
.../{mgltools-autodocktools => mics}/metadata.xml | 0
sci-chemistry/mics/mics-1.00.2011.327.12.00.ebuild | 51 +++++++++++++++++++
sci-chemistry/talosn/ChangeLog | 10 ++++
sci-chemistry/talosn/Manifest | 1 +
.../metadata.xml | 0
.../talosn/talosn-4.01.2013.148.15.55.ebuild | 59 ++++++++++++++++++++++
8 files changed, 132 insertions(+)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-06-18 9:11 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-18 9:11 UTC (permalink / raw
To: gentoo-commits
commit: e3125691869347a622c86488f261435ffcd2fbe0
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 18 09:11:43 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 18 09:11:43 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e3125691
Merge branch 'master' into ccp4
* master:
sci-chemistry/mics: New package
sci-chemistry/talosn: New package
Abinit & friends upgraded to sci-physics/abinit-7.2.2. BigDFT moved from sci-libs to sci-physics, sci-physics/abinit uses sci-libs/bigdft-abi instead. Usage of LIBDIR/finclude abandoned in favour of /usr/include, as mostly used upstream. Old files cleaned up.
Version of bigdft bumped to 1.7_pre24, moved from sci-libs to sci-physics. No longer used as a library by sci-physics/abinit. Usage of LIBDIR/finclude abandoned in favour of /usr/include, as used upstream.
Don't let openmpi override malloc, works around sandbox issue in #462602
sci-libs/mumps/ChangeLog | 5 ++++-
sci-libs/mumps/mumps-4.10.0-r2.ebuild | 5 ++++-
2 files changed, 8 insertions(+), 2 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-06-18 9:13 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-18 9:13 UTC (permalink / raw
To: gentoo-commits
commit: bc1068a33cbde9c6324724e313b548ea0ea78e32
Author: Justin <jlec <AT> j-schmitz <DOT> net>
AuthorDate: Mon Jun 17 07:14:55 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jun 17 07:14:55 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=bc1068a3
Merge pull request #83 from ercpe/ccp4
Added ebuild for sci-visualization/openastexviewer-3.0
sci-visualization/openastexviewer/ChangeLog | 8 +++
sci-visualization/openastexviewer/Manifest | 1 +
.../openastexviewer}/metadata.xml | 2 +-
.../openastexviewer/openastexviewer-3.0.ebuild | 62 ++++++++++++++++++++++
4 files changed, 72 insertions(+), 1 deletion(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-06-18 9:13 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-18 9:13 UTC (permalink / raw
To: gentoo-commits
commit: 1c75b2410a7dce9cc1762cb8c434cbabc12fe3ef
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 18 09:12:35 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 18 09:12:35 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1c75b241
Merge branch 'master' into ccp4
* master:
sci-chemistry/mics: New package
sci-chemistry/talosn: New package
Abinit & friends upgraded to sci-physics/abinit-7.2.2. BigDFT moved from sci-libs to sci-physics, sci-physics/abinit uses sci-libs/bigdft-abi instead. Usage of LIBDIR/finclude abandoned in favour of /usr/include, as mostly used upstream. Old files cleaned up.
Version of bigdft bumped to 1.7_pre24, moved from sci-libs to sci-physics. No longer used as a library by sci-physics/abinit. Usage of LIBDIR/finclude abandoned in favour of /usr/include, as used upstream.
Don't let openmpi override malloc, works around sandbox issue in #462602
Fixed bug in jabref ebuild.
Renamed ebuild to conform with Gentoo Ebuild Naming Convention (TM).
media-gfx/librecad: Cleanup and apply patch from bug #473388
Mangling of the sources of sci-chemistry/freeon reduced, both for 2012.05.03, and for 9999.
[sci-chemistry/nMOLDYN] Update deps
[sci-chemistry/nMOLDYN] Add to overlay
app-text/jabref/ChangeLog | 10 +
...jabref-2.10b.ebuild => jabref-2.10_beta.ebuild} | 8 +-
media-gfx/librecad/ChangeLog | 6 +
media-gfx/librecad/Manifest | 4 +-
media-gfx/librecad/files/1.0.0_rc2-gcc4.6.patch | 38 ---
.../files/librecad-1.0.0_rc2-version.patch | 11 -
media-gfx/librecad/librecad-1.0.2.ebuild | 45 ---
media-gfx/librecad/librecad-2.0.0_beta5.ebuild | 48 ---
media-gfx/librecad/librecad-2.0.0_rc1.ebuild | 27 +-
media-gfx/librecad/metadata.xml | 23 +-
sci-chemistry/freeon/ChangeLog | 9 +
...ch => freeon-2012.05.03-no_internal_hdf5.patch} | 32 +-
.../files/freeon-9999-no_internal_hdf5.patch | 25 ++
.../files/freeon-9999-no_internal_libs.patch | 47 ---
sci-chemistry/mics/ChangeLog | 10 +
sci-chemistry/mics/Manifest | 1 +
.../{mgltools-autodocktools => mics}/metadata.xml | 0
sci-chemistry/mics/mics-1.00.2011.327.12.00.ebuild | 51 +++
sci-chemistry/nMOLDYN/ChangeLog | 12 +
sci-chemistry/nMOLDYN/Manifest | 1 +
sci-chemistry/{trajng => nMOLDYN}/metadata.xml | 0
sci-chemistry/nMOLDYN/nMOLDYN-3.0.10.ebuild | 24 ++
sci-chemistry/talosn/ChangeLog | 10 +
sci-chemistry/talosn/Manifest | 1 +
.../metadata.xml | 0
.../talosn/talosn-4.01.2013.148.15.55.ebuild | 59 ++++
sci-libs/bigdft-abi/ChangeLog | 12 +
sci-libs/bigdft-abi/Manifest | 3 +
.../bigdft-abi-1.0.4.ebuild} | 79 +++--
.../files/bigdft-abi-1.0.4-tests.tar.bz2 | Bin 0 -> 402968 bytes
sci-libs/etsf_io/ChangeLog | 9 +-
..._io-1.0.3-r1.ebuild => etsf_io-1.0.3-r2.ebuild} | 0
sci-libs/fox/ChangeLog | 10 +-
...patch => 4.1.2-r2-install-customizations.patch} | 0
.../{fox-4.1.2-r1.ebuild => fox-4.1.2-r2.ebuild} | 10 +-
sci-libs/libxc/ChangeLog | 11 +-
...libxc-1.1.0-r1.ebuild => libxc-1.2.0-r1.ebuild} | 26 +-
.../{libxc-1.2.0.ebuild => libxc-2.0.1.ebuild} | 27 +-
sci-libs/mumps/ChangeLog | 5 +-
sci-libs/mumps/mumps-4.10.0-r2.ebuild | 5 +-
sci-libs/wannier90/ChangeLog | 7 +
...annier90-1.2.ebuild => wannier90-1.2-r1.ebuild} | 0
sci-physics/abinit/ChangeLog | 9 +
sci-physics/abinit/abinit-7.0.5.ebuild | 356 ---------------------
.../{abinit-7.0.4.ebuild => abinit-7.2.2.ebuild} | 75 +++--
sci-physics/abinit/files/6.0.3-fftw.patch | 14 -
.../abinit/files/6.12.1-libabinit_options.patch | 57 ----
sci-physics/abinit/files/6.12.3-gui-makefiles.tbz | Bin 14600 -> 0 bytes
sci-physics/atompaw/ChangeLog | 7 +
...aw-3.0.1.9.ebuild => atompaw-3.0.1.9-r1.ebuild} | 11 +-
{sci-libs => sci-physics}/bigdft/ChangeLog | 10 +-
.../bigdft/bigdft-1.7_pre24.ebuild | 35 +-
.../files/bigdft-1.7-dev.24-nolib_mods.patch | 14 +-
53 files changed, 497 insertions(+), 797 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-06-18 8:54 [gentoo-commits] proj/sci:fixing " Justin Lecher
2013-06-18 8:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
@ 2013-06-19 6:53 ` Justin Lecher
1 sibling, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-19 6:53 UTC (permalink / raw
To: gentoo-commits
commit: 4c8b2b623e9305166c334d9c5d3d219cb6b78129
Author: Honza Macháček <Hloupy.Honza <AT> centrum <DOT> cz>
AuthorDate: Mon Jun 17 18:58:38 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jun 17 18:58:38 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=4c8b2b62
Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
Trying to commit a complex change of sci-physics/abinit and its libraries, I took some
time to put everything in pace so I have to pull some updates before puhing my work. Something
I do not fully understand is happening. If it breaks things I will try to clean up, as soon as
I understand the situation.
app-text/jabref/ChangeLog | 10 +++++
...jabref-2.10b.ebuild => jabref-2.10_beta.ebuild} | 8 +++-
media-gfx/librecad/ChangeLog | 6 +++
media-gfx/librecad/Manifest | 4 +-
media-gfx/librecad/files/1.0.0_rc2-gcc4.6.patch | 38 -----------------
.../files/librecad-1.0.0_rc2-version.patch | 11 -----
media-gfx/librecad/librecad-1.0.2.ebuild | 45 --------------------
media-gfx/librecad/librecad-2.0.0_beta5.ebuild | 48 ----------------------
media-gfx/librecad/librecad-2.0.0_rc1.ebuild | 27 ++++++------
media-gfx/librecad/metadata.xml | 23 ++++++-----
10 files changed, 48 insertions(+), 172 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-06-19 6:53 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-19 6:53 UTC (permalink / raw
To: gentoo-commits
commit: 83a6f8e906f3701f214c034c05285f7106cc5413
Author: Honza Macháček <Hloupy.Honza <AT> centrum <DOT> cz>
AuthorDate: Tue Jun 18 13:54:29 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 18 13:54:29 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=83a6f8e9
The dependency of several packages on sci-libs/libxc modified to reflect correctly the recent change in the upgrade of sci-physics/abinit & friends.
profiles/package.mask | 6 +++
sci-chemistry/freeon/freeon-2012.05.03.ebuild | 7 +--
sci-chemistry/freeon/freeon-9999.ebuild | 7 +--
sci-chemistry/mics/ChangeLog | 10 ++++
sci-chemistry/mics/Manifest | 1 +
.../{mgltools-autodocktools => mics}/metadata.xml | 0
sci-chemistry/mics/mics-1.00.2011.327.12.00.ebuild | 51 +++++++++++++++++++
sci-chemistry/modeller/ChangeLog | 6 +++
...odeller-9.12.ebuild => modeller-9.12-r1.ebuild} | 2 +-
sci-chemistry/talosn/ChangeLog | 10 ++++
sci-chemistry/talosn/Manifest | 1 +
.../metadata.xml | 0
.../talosn/talosn-4.01.2013.148.15.55.ebuild | 59 ++++++++++++++++++++++
sci-libs/bigdft-abi/ChangeLog | 4 ++
sci-libs/bigdft-abi/Manifest | 2 -
sci-libs/bigdft-abi/bigdft-abi-1.0.4.ebuild | 5 +-
sci-libs/libxc/Manifest | 2 +-
sci-libs/libxc/libxc-9999.ebuild | 27 ++++++----
sci-libs/mumps/ChangeLog | 5 +-
sci-libs/mumps/mumps-4.10.0-r2.ebuild | 5 +-
sci-physics/abinit/ChangeLog | 3 ++
sci-physics/abinit/Manifest | 3 +-
sci-physics/abinit/abinit-7.2.2.ebuild | 2 +-
sci-physics/bigdft/ChangeLog | 5 ++
sci-physics/bigdft/bigdft-1.7_pre24.ebuild | 2 +-
sci-physics/elk/ChangeLog | 4 ++
sci-physics/elk/elk-1.4.22.ebuild | 2 +-
27 files changed, 196 insertions(+), 35 deletions(-)
diff --cc profiles/package.mask
index 0c270df,0c270df..f354cdf
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@@ -68,6 -68,6 +68,12 @@@
>=sci-chemistry/coot-9999
>=sci-chemistry/pymol-9999
++# Honza Macháček <Hloupy.Honza@centrum.cz> (17 June 2013)
++# bigdft moved from sci-libs to sci-physics
++# sci-physics/abinit now uses sci-libs/bigdft-abi instead
++# sci-libs/bigdft should be deleted in 30 days
++sci-libs/bigdft
++
# Justin Lecher <jlec@gentoo.org> (03 March 2013)
# Missing deps
sci-biology/gbrowse
diff --cc sci-chemistry/freeon/freeon-2012.05.03.ebuild
index 99805e0,99805e0..5a9cc6a
--- a/sci-chemistry/freeon/freeon-2012.05.03.ebuild
+++ b/sci-chemistry/freeon/freeon-2012.05.03.ebuild
@@@ -33,11 -33,11 +33,8 @@@ DEPEND="${DEPEND
S="${WORKDIR}/${REAL_PN}-${REAL_PV}"
src_prepare() {
-- # Get rid of the obsolete internal hdf5
-- rm -r "${S}"/hdf5-1.8.3
-- # as well as of the internal lapack
-- rm -r "${S}"/lapack
-- epatch "${FILESDIR}"/"${P}"-no_internal_libs.patch
++ # Prevent the obsolete internal hdf5 breaking autoconf
++ epatch "${FILESDIR}"/"${P}"-no_internal_hdf5.patch
eautoreconf
}
diff --cc sci-chemistry/freeon/freeon-9999.ebuild
index 369e063,369e063..6d02d93
--- a/sci-chemistry/freeon/freeon-9999.ebuild
+++ b/sci-chemistry/freeon/freeon-9999.ebuild
@@@ -31,11 -31,11 +31,8 @@@ DEPEND="${DEPEND
virtual/pkgconfig"
src_prepare() {
-- # Get rid of the obsolete internal hdf5
-- rm -r "${S}"/Modules/hdf5-1.8.3
-- # as well as of the internal lapack
-- rm -r "${S}"/Modules/lapack
-- epatch "${FILESDIR}"/"${P}"-no_internal_libs.patch
++ # Prevent the obsolete internal hdf5 breaking autoconf
++ epatch "${FILESDIR}"/"${P}"-no_internal_hdf5.patch
eautoreconf
}
diff --cc sci-libs/bigdft-abi/ChangeLog
index 4c48008,4c48008..10ecead
--- a/sci-libs/bigdft-abi/ChangeLog
+++ b/sci-libs/bigdft-abi/ChangeLog
@@@ -2,6 -2,6 +2,10 @@@
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
++ 18 Jun 2013; Honza Macháček <Hloupy.Honza@centrum.cz>
++ bigdft-abi-1.0.4.ebuild:
++ The dependency on sci-libs/libxc modified to allow for 1.2.0-r1.
++
*bigdft-abi-1.0.4 (17 Jun 2013)
17 Jun 2013; Honza Macháček <Hloupy.Honza@centrum.cz>
diff --cc sci-libs/bigdft-abi/Manifest
index bd17fc5,bd17fc5..e8a8b97
--- a/sci-libs/bigdft-abi/Manifest
+++ b/sci-libs/bigdft-abi/Manifest
@@@ -1,3 -1,3 +1,1 @@@
--AUX bigdft-abi-1.0.4-tests.tar.bz2 402968 SHA256 11144208456b001f63b75cadce0e9b685054ef8bbc39a76cb08af61d5c86c4fb SHA512 3594d11a8d5834916f44bf6f049630ac9d092df6a7a3171701ef65e5ab56e9d039c2bb4603698cb4935a95189c65d7bf77f44b50617ea8c971a844a2757b3202 WHIRLPOOL 492b92805a4eecb5bb204dbf76acf9a40c790b39708a914e38628a2f4dadc3377eed79f8d986231c006bc8c5be0167af60c36f72212005156e8fe3a3c619281c
DIST bigdft-abi-1.0.4.tar.gz 8982260 SHA256 345cf49da92275710252d50b4ac8364f2f3c33e8f28d84d7b13ccf6fd0c69310 SHA512 556001d1ffd08be70b97f07a8a150d5d033a4611957180a7a25b41963754e0e3d2bb2a4e9d5b6beb8ff6fb1eb6f4ae9b51633cfe3d7f5a8ed20a85be21031c35 WHIRLPOOL b7c58732b538306f2b9b89b1310d9212cc1bb038fded782e6707e54679013ebc8376d54b5bd1bd51464dc7878fa05102fcba8f70a5d38b4571720c8d57ee3af1
--EBUILD bigdft-abi-1.0.4.ebuild 4232 SHA256 006484b64a83d7971efc05670b77d26114eed87f0d062c39e9b9bf01a4a005ce SHA512 bc34310bf3b4b3999574be8f67db51072a53b2a14fbf340edb72d046989f088b3c12b65f98a781fb5791263ce4c947786ee250dcbe4c162dcd194711321db4b5 WHIRLPOOL 28a1b685e427500acda0e210c9d2e72bbcd24bfe2be1b09112a1aab829d1efe9a896e28b45b42ec7db29c4908bc7cb3b73c83d0ad77accf9269ee9774e310537
diff --cc sci-libs/bigdft-abi/bigdft-abi-1.0.4.ebuild
index c285d63,c285d63..91e3bac
--- a/sci-libs/bigdft-abi/bigdft-abi-1.0.4.ebuild
+++ b/sci-libs/bigdft-abi/bigdft-abi-1.0.4.ebuild
@@@ -19,7 -19,7 +19,7 @@@ KEYWORDS="~amd64 ~x86 ~amd64-linux
IUSE="cuda doc etsf_io mpi netcdf openmp opencl test"
RDEPEND="
-- >=sci-libs/libxc-2.0.1[fortran]
++ >=sci-libs/libxc-1.2.0-r1[fortran]
virtual/blas
virtual/fortran
virtual/lapack
@@@ -75,9 -75,9 +75,6 @@@ pkg_setup()
}
src_prepare() {
--# epatch \
--# "${FILESDIR}"/"${P}"-nolib_mods.patch
--#
tar -xjf "${FILESDIR}"/"${P}"-tests.tar.bz2 -C "${S}"/tests/DFT/
eautoreconf
}
diff --cc sci-libs/libxc/Manifest
index fa863cf,fa863cf..a85ebc8
--- a/sci-libs/libxc/Manifest
+++ b/sci-libs/libxc/Manifest
@@@ -1,2 -1,2 +1,2 @@@
--DIST libxc-1.1.0.tar.gz 543168 SHA256 b75fb2a73a9e2d75e250cc77b71d5485c8e9b11c3b25c91899c366e217283c57 SHA512 a5ed3a4a7a7abaa11321fe877d01ff00132eab976205213e578cd57fbd2073eea00ce3a3afc188e30ebbd31deb32468c4472313df9992e8d9e3148e6f619936b WHIRLPOOL 8ff70acb2ee65b3373942b71e350fe146f1c205aa4c09dbb22adc04227ba6888482ce412b3e843a9402efd51f9cf6f478f9c65b97305b2035185e59b35484d9f
DIST libxc-1.2.0.tar.gz 895527 SHA256 ee441c3cde2e2bd87828186aa17f6e4438d17b38634c5d29bb12d3b7554461fb SHA512 3ac0fd07e40db4feb0f0a4ebe1358fdd4de0fff21f6dd369895c658a14cd3bafedbbc374b89f68320401dfcfe16a6230e05403fdaccfcbebb98349ca06593125 WHIRLPOOL 66439bf65a656567c0e52a4ee20b206658a9185bdbd3e045daca00bf01ba0199ccbedea3e5034cf90fbc36dbc04d9666cde8bde46e2577ffd160800f1718bd2a
++DIST libxc-2.0.1.tar.gz 1062846 SHA256 c332f08648ec2bc7ccce83e45a84776215aa5dfebc64fae2a23f2ac546d41ea4 SHA512 c7d87134911fdfd91d985397a3fa990a63cc05d0752f0e2522e41dae0c2f39c43f9bd87ee6eb1972ab92b1aedeefad55a33ad84b1c66032e61ca03c87db02c5b WHIRLPOOL 16a5b999bb60177fde1371421f41f35736af4fcf8df123318ea438ffd34f487dcbadc95124ab9cf6ab2edeadd7983c56e0ca9d84bf528254de1f2a003addd402
diff --cc sci-libs/libxc/libxc-9999.ebuild
index baf29d4,baf29d4..2432915
--- a/sci-libs/libxc/libxc-9999.ebuild
+++ b/sci-libs/libxc/libxc-9999.ebuild
@@@ -1,8 -1,8 +1,8 @@@
--# Copyright 1999-2012 Gentoo Foundation
++# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
--EAPI=4
++EAPI=5
inherit autotools-utils fortran-2 multilib subversion
@@@ -14,7 -14,7 +14,7 @@@ ESVN_BOOTSTRAP="eautoreconf -i
LICENSE="LGPL-3"
SLOT="0"
KEYWORDS=""
--IUSE="fortran static-libs"
++IUSE="fortran static-libs -test"
MAKEOPTS+=" -j1"
@@@ -31,14 -31,14 +31,21 @@@ src_configure()
autotools-utils_src_configure
}
++## Upstream recommends not running the test suite because it requires
++## human expert interpretation to determine whether output is an error or
++## expected under certain circumstances. Nevertheless, experts might want the option.
++# The autotools src_test function modified not to die. Runs emake check in build directory.
++src_test() {
++ debug-print-function ${FUNCNAME} "$@"
++
++ _check_build_dir
++ pushd "${BUILD_DIR}" > /dev/null || die
++ make check || ewarn "Make check failed. See above for details."
++ einfo "emake check done"
++ popd > /dev/null || die
++}
++
src_install() {
autotools-utils_src_install
-- if use fortran; then
-- insinto /usr/$(get_libdir)/finclude
-- pushd "${AUTOTOOLS_BUILD_DIR}"/src >/dev/null
-- doins *.mod || die
-- rm -f "${D}"/usr/include/*.mod || die
-- popd >/dev/null
-- fi
}
diff --cc sci-physics/abinit/ChangeLog
index a4f623b,a4f623b..2f76ad0
--- a/sci-physics/abinit/ChangeLog
+++ b/sci-physics/abinit/ChangeLog
@@@ -2,6 -2,6 +2,9 @@@
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
++ 18 Jun 2013; Honza Macháček <Hloupy.Honza@centrum.cz> abinit-7.2.2.ebuild:
++ The dependency on sci-libs/libxc modified to allow for 1.2.0-r1.
++
*abinit-7.2.2 (17 Jun 2013)
17 Jun 2013; Honza Macháček <Hloupy.Honza@centrum.cz> -abinit-7.0.4.ebuild,
diff --cc sci-physics/abinit/Manifest
index dee0365,dee0365..f000cdc
--- a/sci-physics/abinit/Manifest
+++ b/sci-physics/abinit/Manifest
@@@ -1,2 -1,2 +1,1 @@@
--DIST abinit-7.0.4.tar.gz 61715030 SHA256 b3ad895b75b92b3ff05e873d42d0b26f6e6113b9de4579966f7b6d1b49d6004e SHA512 8edfe4019c968e6f912d0678fe331fc8a6ce2848f1b16973336d4181d010a776ed1ea2c5500499dac895d9d773d72165e20524705cf8928f91ede873272b0417 WHIRLPOOL 35da8681a68e435b460a11112e6cf6990fdf141d53d5849be45225d50e803e2bfc65cb05e5e576c704411be5734e47ed2e4ccca1fd1689311bd4febea937f0f8
--DIST abinit-7.0.5.tar.gz 61711550 SHA256 b16556aa05448781d872ab18f76ca6446a52be9eeed8d22015a0b63f4adf0f54 SHA512 007292cc7cdf459a5d62e907b29009d9496955952b5f491fa9183a5abb86dbf48020eb435b784d74037e381d65d2255a2b9a130322ee9bfecbff8ca075488ecd WHIRLPOOL 74d83a3a05817eaca402ace1b7ec3c3a6db3697a7ca0166549aee8155edfa2a7c8d516e2ae210a6f0e855f72617d704785bbb10e3a3ee262140964913608a307
++DIST abinit-7.2.2.tar.gz 63683267 SHA256 96f83e3af63e993cb886d9d6cd1c4fac04d50b5e460d5620330441050a909533 SHA512 fbc4898ae4625e12ea22d8f2da63e037eb947320fedf800bd40bd7e0015633ce54b7cb224cee3fc931d015774c51df5f8594ebe26a409cb0325e7a3ab0bf5e4a WHIRLPOOL a149d7ecea9b2b19b94b4e873f1924ce5fe221e037c642d6428727b552dc0c428b288551dda708286995da26080171c385a3ef3ad3766e065073139d4ef0f2e8
diff --cc sci-physics/abinit/abinit-7.2.2.ebuild
index 0a2b49b,0a2b49b..a420f51
--- a/sci-physics/abinit/abinit-7.2.2.ebuild
+++ b/sci-physics/abinit/abinit-7.2.2.ebuild
@@@ -16,7 -16,7 +16,7 @@@ KEYWORDS="~amd64 ~x86
IUSE="cuda cuda-double -debug +etsf_io +fftw +fftw-threads +fox gsl gui +hdf5 libabinit mpi +netcdf openmp python -test +threads -vdwxc"
RDEPEND="~sci-libs/bigdft-abi-1.0.4
-- >=sci-libs/libxc-2.0.1[fortran]
++ >=sci-libs/libxc-1.2.0-r1[fortran]
>=sci-physics/atompaw-3.0.1.9-r1[libxc]
etsf_io? ( >=sci-libs/etsf_io-1.0.3-r2 )
fox? ( >=sci-libs/fox-4.1.2-r2[sax] )
diff --cc sci-physics/bigdft/ChangeLog
index 0c32817,0c32817..3e78db9
--- a/sci-physics/bigdft/ChangeLog
+++ b/sci-physics/bigdft/ChangeLog
@@@ -2,6 -2,6 +2,11 @@@
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
++ 18 Jun 2013; Honza Macháček <Hloupy.Honza@centrum.cz>
++ bigdft-1.7_pre24.ebuild:
++ The dependency on sci-libs/libxc corrected to reflect the recent change in
++ the upgrade of sci-physics/abinit & friends.
++
*bigdft-1.7_pre24 (17 Jun 2013)
17 Jun 2013; Honza Macháček <Hloupy.Honza@centrum.cz>
diff --cc sci-physics/bigdft/bigdft-1.7_pre24.ebuild
index d74906a,d74906a..4a354aa
--- a/sci-physics/bigdft/bigdft-1.7_pre24.ebuild
+++ b/sci-physics/bigdft/bigdft-1.7_pre24.ebuild
@@@ -20,7 -20,7 +20,7 @@@ KEYWORDS="~amd64 ~x86 ~amd64-linux
IUSE="cuda doc etsf_io mpi netcdf openmp opencl test"
RDEPEND="
-- >=sci-libs/libxc-1.0[fortran]
++ >=sci-libs/libxc-1.2.0-r1[fortran]
virtual/blas
virtual/fortran
virtual/lapack
diff --cc sci-physics/elk/ChangeLog
index 28ac97d,28ac97d..2a837bc
--- a/sci-physics/elk/ChangeLog
+++ b/sci-physics/elk/ChangeLog
@@@ -2,6 -2,6 +2,10 @@@
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
++ 18 Jun 2013; Honza Macháček <Hloupy.Honza@centrum.cz> elk-1.4.22.ebuild:
++ The dependency on sci-libs/libxc adapted to its recent change in the upgrade
++ of sci-physics/abinit & friends.
++
21 Feb 2013; Justin Lecher <jlec@gentoo.org> elk-1.4.22.ebuild:
Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config;
add missing dep on virtual/pkgconfig; cleaning of ebuild
diff --cc sci-physics/elk/elk-1.4.22.ebuild
index ab7cd8d,ab7cd8d..5e99d05
--- a/sci-physics/elk/elk-1.4.22.ebuild
+++ b/sci-physics/elk/elk-1.4.22.ebuild
@@@ -19,7 -19,7 +19,7 @@@ RDEPEND=
lapack? (
virtual/blas
virtual/lapack )
-- libxc? ( =sci-libs/libxc-1*[fortran] )
++ libxc? ( >=sci-libs/libxc-1.2.0-r1[fortran] )
mpi? ( virtual/mpi )"
DEPEND="${RDEPEND}
perl? ( dev-lang/perl )
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-06-26 7:09 [gentoo-commits] proj/sci:jlec " Justin Lecher
@ 2013-06-19 6:53 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-19 6:53 UTC (permalink / raw
To: gentoo-commits
commit: 43ae215b3409c36d8f51402580ead76fc6624763
Author: Honza Macháček <Hloupy.Honza <AT> centrum <DOT> cz>
AuthorDate: Tue Jun 18 13:55:47 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 18 13:55:47 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=43ae215b
Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
Looks like I have broken something. Conflicts are reported in sci-libs/libxc.
Trying desperately to recover.
sci-chemistry/talosn/ChangeLog | 6 ++++++
...48.15.55.ebuild => talosn-4.01.2013.148.15.55-r2.ebuild} | 13 +++++++++++--
2 files changed, 17 insertions(+), 2 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-06-19 6:53 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-06-19 6:53 UTC (permalink / raw
To: gentoo-commits
commit: 7deb8b2f53280b43e75b7bbe369a64ce85eac123
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Jun 19 06:53:31 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jun 19 06:53:31 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7deb8b2f
Merge branch 'master' into ccp4
* master:
fixed qt4 build
fixing manifests
big fixes of metadata and package sub-herd re-distribution
sci-physics/openmx upgraded to 3.7.3 with some openMP and MPI C/F90 juggling, previous sci-physics/openmx-3.6 preserved for the time being.
sci-chemistry/talosn: drop upstream path in favour of our
sci-chemistry/modeller: Fix broken symlink, #473680
Abinit & friends upgraded to sci-physics/abinit-7.2.2. BigDFT moved from sci-libs to sci-physics, sci-physics/abinit uses sci-libs/bigdft-abi instead. Usage of LIBDIR/finclude abandoned in favour of /usr/include, as mostly used upstream. Old files cleaned up.
Version of bigdft bumped to 1.7_pre24, moved from sci-libs to sci-physics. No longer used as a library by sci-physics/abinit. Usage of LIBDIR/finclude abandoned in favour of /usr/include, as used upstream.
app-text/dgs/metadata.xml | 3 -
app-vim/freefem++-syntax/metadata.xml | 7 +-
app-vim/vim-gromacs/metadata.xml | 5 +-
dev-db/cppdb/metadata.xml | 19 +--
dev-libs/simclist/metadata.xml | 17 +--
dev-ml/mlgmpidl/metadata.xml | 23 ++-
dev-ml/ocamlgraph/metadata.xml | 47 +++---
dev-ml/zarith/metadata.xml | 20 +--
dev-perl/opal-client/metadata.xml | 3 -
dev-python/opal-client/metadata.xml | 5 +-
dev-tcltk/img_rotate/metadata.xml | 5 +-
dev-tcltk/togl/metadata.xml | 3 -
media-libs/OpenMOIV/metadata.xml | 3 -
media-libs/libgfx/metadata.xml | 3 -
profiles/package.mask | 6 +
sci-biology/perlprimer/metadata.xml | 3 -
sci-chemistry/GromacsWrapper/metadata.xml | 2 +-
sci-chemistry/ball/metadata.xml | 2 +-
sci-chemistry/burrow-owl/metadata.xml | 5 +-
sci-chemistry/camshift/metadata.xml | 5 +-
sci-chemistry/chemBuild/metadata.xml | 2 +-
sci-chemistry/chimera-bin/metadata.xml | 2 +-
sci-chemistry/chooch/metadata.xml | 5 +-
sci-chemistry/cnsface/metadata.xml | 5 +-
sci-chemistry/concoord/metadata.xml | 2 +-
sci-chemistry/coot/metadata.xml | 3 -
sci-chemistry/cs-rosetta/metadata.xml | 2 +-
sci-chemistry/curvefit/metadata.xml | 2 +-
sci-chemistry/direx/metadata.xml | 3 -
sci-chemistry/dssp2pdb/metadata.xml | 3 -
sci-chemistry/freeon/freeon-2012.05.03.ebuild | 7 +-
sci-chemistry/freeon/freeon-9999.ebuild | 7 +-
sci-chemistry/hydronmr/metadata.xml | 2 +-
sci-chemistry/jana2000/metadata.xml | 3 -
sci-chemistry/jligand/metadata.xml | 5 +-
sci-chemistry/ligplot+/metadata.xml | 2 +-
sci-chemistry/mage/metadata.xml | 3 -
sci-chemistry/mddnmr/metadata.xml | 5 +-
sci-chemistry/modelfree/metadata.xml | 2 +-
sci-chemistry/modeller/ChangeLog | 6 +
...odeller-9.12.ebuild => modeller-9.12-r1.ebuild} | 2 +-
sci-chemistry/mtz2hkl/metadata.xml | 3 -
sci-chemistry/mtz2sca/metadata.xml | 3 -
sci-chemistry/phenix-bin/metadata.xml | 2 +-
sci-chemistry/polygon/metadata.xml | 5 +-
sci-chemistry/pymol-apbs-plugin/metadata.xml | 5 +-
sci-chemistry/rosetta-tools/metadata.xml | 3 -
sci-chemistry/rosetta/metadata.xml | 23 ++-
sci-chemistry/shiftx/metadata.xml | 5 +-
sci-chemistry/shiftx2/metadata.xml | 2 +-
sci-chemistry/simpson/metadata.xml | 2 +-
sci-chemistry/smmp/metadata.xml | 5 +-
sci-chemistry/specView/metadata.xml | 2 +-
sci-chemistry/ssp/metadata.xml | 2 +-
sci-chemistry/talosn/ChangeLog | 6 +
...ebuild => talosn-4.01.2013.148.15.55-r2.ebuild} | 13 +-
sci-chemistry/ucsf-tools/metadata.xml | 2 +-
sci-chemistry/unio/metadata.xml | 5 +-
sci-libs/Cgraph/metadata.xml | 5 +-
sci-libs/bigdft-abi/ChangeLog | 4 +
sci-libs/bigdft-abi/Manifest | 2 -
sci-libs/bigdft-abi/bigdft-abi-1.0.4.ebuild | 5 +-
sci-libs/bigdft/metadata.xml | 19 +--
sci-libs/cnsface-scripts/metadata.xml | 3 -
sci-libs/driftwood/metadata.xml | 5 +-
sci-libs/etsf_io/metadata.xml | 5 +-
sci-libs/fox/metadata.xml | 19 +--
sci-libs/libxc/Manifest | 2 +-
sci-libs/libxc/libxc-9999.ebuild | 27 ++--
sci-libs/libxc/metadata.xml | 5 +-
sci-libs/med/metadata.xml | 5 +-
sci-libs/msms/metadata.xml | 5 +-
sci-libs/pagmo/metadata.xml | 13 +-
sci-libs/starparse/metadata.xml | 5 +-
sci-libs/wannier90/metadata.xml | 5 +-
sci-mathematics/alt-ergo/metadata.xml | 23 +--
sci-mathematics/apron/metadata.xml | 31 ++--
sci-mathematics/flocq/metadata.xml | 17 +--
sci-mathematics/frama-c/metadata.xml | 28 ++--
sci-mathematics/gap-guava/metadata.xml | 5 +-
sci-mathematics/gappa/metadata.xml | 22 +--
sci-mathematics/gappalib-coq/metadata.xml | 15 +-
sci-mathematics/giac/metadata.xml | 24 +--
sci-mathematics/ltl2ba/metadata.xml | 3 -
sci-mathematics/pff/metadata.xml | 17 +--
sci-mathematics/why/metadata.xml | 32 ++--
sci-physics/LoopTools/metadata.xml | 2 +-
sci-physics/abinit/ChangeLog | 3 +
sci-physics/abinit/Manifest | 3 +-
sci-physics/abinit/abinit-7.2.2.ebuild | 2 +-
sci-physics/atompaw/metadata.xml | 11 +-
sci-physics/atompaw2abinit/metadata.xml | 5 +-
sci-physics/bigdft/ChangeLog | 5 +
sci-physics/bigdft/Manifest | 1 +
sci-physics/bigdft/bigdft-1.7_pre24.ebuild | 2 +-
sci-physics/elk/ChangeLog | 4 +
sci-physics/elk/elk-1.4.22.ebuild | 2 +-
sci-physics/herwig++/metadata.xml | 2 +-
sci-physics/openmx/ChangeLog | 7 +
sci-physics/openmx/Manifest | 2 +
sci-physics/openmx/files/3.7-fortran_objects.patch | 15 ++
sci-physics/openmx/metadata.xml | 2 +-
sci-physics/openmx/openmx-3.7.3.ebuild | 161 +++++++++++++++++++++
sci-physics/thepeg/metadata.xml | 2 +-
sci-visualization/gnuplot/ChangeLog | 3 +
sci-visualization/gnuplot/gnuplot-4.7.9999.ebuild | 2 +-
sci-visualization/v_sim/metadata.xml | 3 -
www-apps/py-swish-e/metadata.xml | 5 +-
x11-libs/tr/metadata.xml | 3 -
109 files changed, 482 insertions(+), 463 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-07-08 11:54 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-07-08 11:54 UTC (permalink / raw
To: gentoo-commits
commit: d1167d3e9fbea263a965cb527c1ec46e27318474
Author: Justin <jlec <AT> j-schmitz <DOT> net>
AuthorDate: Wed Jun 26 07:24:32 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jun 26 07:24:32 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=d1167d3e
Merge pull request #86 from gentryx/master
Added TCL patch to modules 3.2.10
...odules-3.2.9c-errorline.patch => modules-3.2.10-errorline.patch} | 1 -
sys-cluster/modules/files/modules-3.2.9c-errorline.patch | 1 -
sys-cluster/modules/modules-3.2.10.ebuild | 6 +++---
3 files changed, 3 insertions(+), 5 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-07-11 20:26 [gentoo-commits] proj/sci:vtk " Justin Lecher
@ 2013-07-08 11:54 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-07-08 11:54 UTC (permalink / raw
To: gentoo-commits
commit: 9fb3b01bb87df3f976ef259d9aa4a09012ac4988
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Jun 26 14:54:49 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jun 26 14:54:49 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=9fb3b01b
Merge branch 'master-broken'
* master-broken:
sci-chemistry/ucsf-tools: Fix compilation with latest gcc
sci-chemistry/modeller: Fix lib position, #474696
sci-chemistry/pymol: Update repo uri
sci-chemistry/pymol: Update repo uri
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-07-11 20:26 [gentoo-commits] proj/sci:vtk " Justin Lecher
@ 2013-07-08 11:54 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-07-08 11:54 UTC (permalink / raw
To: gentoo-commits
commit: f964406968cbe45f9268653af44c2dc6b52baadd
Author: Sébastien Fabbro <bicatali <AT> gentoo <DOT> org>
AuthorDate: Wed Jun 26 15:26:34 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jun 26 15:26:34 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f9644069
Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
dev-lang/ispc/ChangeLog | 3 ++
dev-lang/ispc/ispc-9999.ebuild | 3 +-
sci-chemistry/gnome-chemistry-utils/ChangeLog | 4 ++
.../gnome-chemistry-utils-0.14.2.ebuild | 2 +-
sci-chemistry/gnome-chemistry-utils/metadata.xml | 8 ++--
sci-chemistry/modeller/ChangeLog | 4 ++
...ller-9.12-r1.ebuild => modeller-9.12-r2.ebuild} | 3 +-
sci-chemistry/pymol/ChangeLog | 3 ++
sci-chemistry/pymol/pymol-9999.ebuild | 2 +-
sci-chemistry/ucsf-tools/ChangeLog | 3 ++
sci-chemistry/ucsf-tools/ucsf-tools-9999.ebuild | 13 +++++-
sci-physics/lammps/ChangeLog | 3 ++
sci-physics/lammps/lammps-20130526.ebuild | 25 +++++------
sys-cluster/charm/ChangeLog | 3 ++
sys-cluster/charm/charm-6.5.0.ebuild | 51 ++++++++--------------
...orline.patch => modules-3.2.10-errorline.patch} | 1 -
.../modules/files/modules-3.2.9c-errorline.patch | 1 -
sys-cluster/modules/modules-3.2.10.ebuild | 6 +--
18 files changed, 79 insertions(+), 59 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-07-08 11:54 [gentoo-commits] proj/sci:jlec " Justin Lecher
@ 2013-07-08 11:54 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-07-08 11:54 UTC (permalink / raw
To: gentoo-commits
commit: 5bdbd20181a8d1c6e88a852b8c869804ebf450d1
Author: Sébastien Fabbro <bicatali <AT> gentoo <DOT> org>
AuthorDate: Wed Jun 26 16:53:22 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jun 26 16:53:22 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5bdbd201
Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
sci-physics/lammps/ChangeLog | 3 +++
sci-physics/lammps/lammps-20130526.ebuild | 2 +-
2 files changed, 4 insertions(+), 1 deletion(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
2013-07-08 11:54 [gentoo-commits] proj/sci:jlec " Justin Lecher
@ 2013-07-08 11:54 ` Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-07-08 11:54 UTC (permalink / raw
To: gentoo-commits
commit: e88605269a92bfb4a232752657f59519603709da
Author: Nicolas Bock <nicolasbock <AT> gmail <DOT> com>
AuthorDate: Wed Jun 26 18:32:49 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jun 26 18:32:49 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e8860526
Merge branch 'master' of github.com:gentoo-science/sci
dev-java/fits/ChangeLog | 9 +-
dev-java/fits/Manifest | 2 +-
.../{fits-1.08.1.ebuild => fits-1.11.0.ebuild} | 6 +-
sci-libs/lwpr/ChangeLog | 9 +-
sci-libs/lwpr/Manifest | 2 +-
sci-libs/lwpr/files/lwpr-1.2.2-setup.py.patch | 12 --
sci-libs/lwpr/lwpr-1.2.2.ebuild | 83 ---------
sci-libs/lwpr/lwpr-1.2.5.ebuild | 51 ++++++
sci-libs/lwpr/metadata.xml | 10 +-
sys-cluster/modules/ChangeLog | 10 ++
sys-cluster/modules/files/createmodule.py | 186 +++++++++++++++++++++
sys-cluster/modules/files/createmodule.sh | 166 ++++++++++++++++++
.../modules/files/modules-3.2.10-avail.patch | 12 ++
.../modules/files/modules-3.2.10-bindir.patch | 11 ++
.../modules/files/modules-3.2.10-clear.patch | 11 ++
.../modules/files/modules-3.2.10-versioning.patch | 10 ++
sys-cluster/modules/files/modules.sh.in | 7 +
sys-cluster/modules/metadata.xml | 20 ++-
sys-cluster/modules/modules-3.2.10-r1.ebuild | 61 +++++++
19 files changed, 561 insertions(+), 117 deletions(-)
^ permalink raw reply [flat|nested] 71+ messages in thread
* [gentoo-commits] proj/sci:ccp4 commit in: /
@ 2013-07-08 11:54 Justin Lecher
0 siblings, 0 replies; 71+ messages in thread
From: Justin Lecher @ 2013-07-08 11:54 UTC (permalink / raw
To: gentoo-commits
commit: 3833417300c4a4415fac9efa033c5a11f0bb42d7
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 30 11:39:22 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jun 30 11:39:22 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=38334173
Merge branch 'master' into ccp4
* master: (46 commits)
sci-libs/msms: Version BUmp; Bump to new distutil-r1.eclass
app-doc/root-docs: version bump
sci-physics/root: version bump
sys-cluster/hpl: version bump and fixes
fixed deps
In sci-libs/bigdft-abi-1.0.4-r1, CUDA support made compile.
moved to gx86
moved to gx86
Beautify
Beautify
Beautify.
Added new package: projections
Added new package: projections
Bashified package name mangling.
sys-cluster/modules: Prefix keyworded. Added tests. FHS fixes. Add bunch of fedora patches
Fixed missing use flag.
sci-chemistry/ucsf-tools: Fix compilation with latest gcc
sci-chemistry/modeller: Fix lib position, #474696
sci-chemistry/pymol: Update repo uri
sci-chemistry/pymol: Update repo uri
...
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
Conflicts:
sci-chemistry/shiftx/ChangeLog
sci-chemistry/shiftx/shiftx-1.1.ebuild
app-admin/eselect/ChangeLog | 6 +
app-admin/eselect/Manifest | 2 +-
...1.3.4-r100.ebuild => eselect-1.3.5-r100.ebuild} | 0
app-doc/root-docs/ChangeLog | 6 +
app-doc/root-docs/Manifest | 2 +-
...ocs-5.34.08.ebuild => root-docs-5.34.09.ebuild} | 2 +-
dev-java/fits/ChangeLog | 9 +-
dev-java/fits/Manifest | 2 +-
.../{fits-1.08.1.ebuild => fits-1.11.0.ebuild} | 6 +-
dev-lang/ispc/ChangeLog | 3 +
dev-lang/ispc/ispc-9999.ebuild | 3 +-
sci-chemistry/ambertools/ChangeLog | 4 +-
sci-chemistry/ambertools/ambertools-12.ebuild | 2 +-
sci-chemistry/gnome-chemistry-utils/ChangeLog | 4 +
.../gnome-chemistry-utils-0.14.2.ebuild | 2 +-
sci-chemistry/gnome-chemistry-utils/metadata.xml | 8 +-
sci-chemistry/modeller/ChangeLog | 4 +
...ller-9.12-r1.ebuild => modeller-9.12-r2.ebuild} | 3 +-
sci-chemistry/pymol/ChangeLog | 3 +
sci-chemistry/pymol/pymol-9999.ebuild | 2 +-
sci-chemistry/shiftx/ChangeLog | 5 +-
sci-chemistry/shiftx/shiftx-1.1.ebuild | 3 +
sci-chemistry/ucsf-tools/ChangeLog | 3 +
sci-chemistry/ucsf-tools/ucsf-tools-9999.ebuild | 13 +-
sci-libs/bigdft-abi/ChangeLog | 21 +++
...abi-1.0.4.ebuild => bigdft-abi-1.0.4-r1.ebuild} | 9 +-
.../files/bigdft-abi-1.0.4-CUDA_gethostname.patch | 22 +++
sci-libs/coinor-clp/ChangeLog | 6 +
sci-libs/coinor-clp/Manifest | 2 +-
...-clp-1.15.0.ebuild => coinor-clp-1.15.1.ebuild} | 4 +-
.../files/coinor-clp-1.15.1-mpi-header.patch | 12 ++
sci-libs/etsf_io/ChangeLog | 4 +
sci-libs/etsf_io/etsf_io-1.0.3-r2.ebuild | 6 +-
sci-libs/fox/ChangeLog | 4 +
.../files/4.1.2-r2-install-customizations.patch | 4 +-
sci-libs/lwpr/ChangeLog | 9 +-
sci-libs/lwpr/Manifest | 2 +-
sci-libs/lwpr/files/lwpr-1.2.2-setup.py.patch | 12 --
sci-libs/lwpr/lwpr-1.2.2.ebuild | 83 ---------
sci-libs/lwpr/lwpr-1.2.5.ebuild | 51 ++++++
sci-libs/lwpr/metadata.xml | 10 +-
sci-libs/msms/ChangeLog | 10 +-
sci-libs/msms/Manifest | 3 +-
sci-libs/msms/metadata.xml | 2 +-
sci-libs/msms/msms-1.5.4-r1.ebuild | 54 ------
.../{msms-1.5.6_rc2.ebuild => msms-1.5.6.ebuild} | 19 +--
sci-libs/trilinos/ChangeLog | 7 +-
sci-libs/trilinos/metadata.xml | 16 ++
sci-libs/trilinos/trilinos-11.2.3.ebuild | 186 +++++++++++++++++++++
sci-physics/abinit/ChangeLog | 4 +
sci-physics/abinit/files/6.12.3-gui-makefiles.tbz | Bin 0 -> 14600 bytes
sci-physics/bigdft/ChangeLog | 8 +
sci-physics/bigdft/bigdft-1.7_pre24.ebuild | 2 +
sci-physics/lammps/ChangeLog | 55 ------
sci-physics/lammps/Manifest | 3 -
sci-physics/lammps/lammps-20130512.ebuild | 72 --------
sci-physics/lammps/lammps-20130514.ebuild | 75 ---------
sci-physics/lammps/lammps-20130526.ebuild | 75 ---------
sci-physics/lammps/metadata.xml | 30 ----
sci-physics/root/ChangeLog | 6 +
sci-physics/root/Manifest | 5 +-
sci-physics/root/metadata.xml | 1 +
.../{root-5.34.08.ebuild => root-5.34.09.ebuild} | 15 +-
sys-cluster/charm/ChangeLog | 26 ---
sys-cluster/charm/Manifest | 1 -
sys-cluster/charm/charm-6.5.0.ebuild | 175 -------------------
.../charm/files/charm-6.5.0-charmc-gentoo.patch | 25 ---
sys-cluster/charm/metadata.xml | 10 --
sys-cluster/charmdebug/ChangeLog | 12 ++
sys-cluster/charmdebug/Manifest | 1 +
sys-cluster/charmdebug/charmdebug-6.2.0.ebuild | 31 ++++
.../charmdebug}/metadata.xml | 0
sys-cluster/hpl/ChangeLog | 8 +
sys-cluster/hpl/Manifest | 3 +-
.../hpl/{hpl-2.0-r1.ebuild => hpl-2.1.ebuild} | 33 ++--
sys-cluster/modules/ChangeLog | 10 ++
sys-cluster/modules/files/createmodule.py | 186 +++++++++++++++++++++
sys-cluster/modules/files/createmodule.sh | 166 ++++++++++++++++++
.../modules/files/modules-3.2.10-avail.patch | 12 ++
.../modules/files/modules-3.2.10-bindir.patch | 11 ++
.../modules/files/modules-3.2.10-clear.patch | 11 ++
...orline.patch => modules-3.2.10-errorline.patch} | 1 -
.../modules/files/modules-3.2.10-versioning.patch | 10 ++
.../modules/files/modules-3.2.9c-errorline.patch | 1 -
sys-cluster/modules/files/modules.sh.in | 7 +
sys-cluster/modules/metadata.xml | 20 ++-
sys-cluster/modules/modules-3.2.10-r1.ebuild | 61 +++++++
sys-cluster/modules/modules-3.2.10.ebuild | 6 +-
sys-cluster/projections/ChangeLog | 13 ++
sys-cluster/projections/Manifest | 1 +
.../projections}/metadata.xml | 0
sys-cluster/projections/projections-6.2.1.ebuild | 30 ++++
92 files changed, 1091 insertions(+), 786 deletions(-)
diff --cc sci-chemistry/shiftx/ChangeLog
index 85e5049,f656301..2efad58
--- a/sci-chemistry/shiftx/ChangeLog
+++ b/sci-chemistry/shiftx/ChangeLog
@@@ -5,8 -8,8 +8,8 @@@
20 Jun 2013; Justin Lecher <jlec@gentoo.org> shiftx-1.1.ebuild,
files/1.1-Makefile.patch, +files/1.1-bfr-overflow.patch, metadata.xml:
Fix patch and add patch for buffer overflow fix
--
16 Jun 2013; Justin Lecher <jlec@gentoo.org> shiftx-1.1.ebuild, metadata.xml:
++
Bump to EAPI=5 and fix license
*shiftx-1.1 (14 Jun 2009)
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2013-06-10 12:01 [gentoo-commits] proj/sci:ccp4 commit in: / Justin Lecher
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2013-07-11 20:26 [gentoo-commits] proj/sci:vtk " Justin Lecher
2013-07-08 11:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-07-11 20:26 [gentoo-commits] proj/sci:vtk " Justin Lecher
2013-07-08 11:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-07-08 11:54 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-07-08 11:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-07-08 11:54 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-07-08 11:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-07-08 11:54 Justin Lecher
2013-07-08 11:54 Justin Lecher
2013-06-26 7:09 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-19 6:53 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
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2013-06-18 8:54 [gentoo-commits] proj/sci:fixing " Justin Lecher
2013-06-18 8:54 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-19 6:53 ` Justin Lecher
2013-06-18 8:54 Justin Lecher
2013-06-17 5:55 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-13 7:08 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17 5:55 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-13 7:08 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17 5:55 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-13 7:08 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17 5:55 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-13 7:08 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17 5:55 [gentoo-commits] proj/sci:fixing " Justin Lecher
2013-06-17 5:55 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17 5:55 [gentoo-commits] proj/sci:fixing " Justin Lecher
2013-06-17 5:55 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-17 5:55 Justin Lecher
2013-06-17 5:55 Justin Lecher
2013-06-17 5:55 Justin Lecher
2013-06-16 17:23 [gentoo-commits] proj/sci:master " Justin Lecher
2013-06-17 5:55 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-16 15:53 Justin Lecher
2013-06-16 14:23 [gentoo-commits] proj/sci:fixing " Justin Lecher
2013-06-16 14:23 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-16 14:23 Justin Lecher
2013-06-14 11:21 Justin Lecher
2013-06-13 7:08 Justin Lecher
2013-06-13 7:08 Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-04 11:59 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-04 11:59 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-01 17:24 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-06-01 17:24 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-12 8:13 [gentoo-commits] proj/sci:jlec " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-10 12:01 Justin Lecher
2013-06-10 11:57 [gentoo-commits] proj/sci:master " Justin Lecher
2013-06-10 12:01 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-06-04 11:59 Justin Lecher
2013-06-04 11:59 Justin Lecher
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2013-05-30 10:31 Justin Lecher
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2013-05-15 6:19 [gentoo-commits] proj/sci:master " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-05-15 6:19 [gentoo-commits] proj/sci:master " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2013-05-06 8:26 [gentoo-commits] proj/sci:master " Justin Lecher
2013-05-30 10:31 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
2012-12-12 9:23 Justin Lecher
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2012-12-10 14:47 [gentoo-commits] proj/sci:master " Justin Lecher
2012-12-12 9:23 ` [gentoo-commits] proj/sci:ccp4 " Justin Lecher
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