[gentoo-commits] proj/sci:ccp4 commit in: sci-chemistry/aimless/

[gentoo-commits] proj/sci:ccp4 commit in: sci-chemistry/aimless/

[Justin Lecher]

commit:     2cc25eba8953e7588222f389cd98339150273efb
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Jun  1 17:22:43 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Jun  1 17:22:43 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2cc25eba

sci-chemistry/aimless: New package

Package-Manager: portage-2.2.0_alpha177

---
 sci-chemistry/aimless/ChangeLog             | 10 +++++
 sci-chemistry/aimless/aimless-0.1.30.ebuild | 67 +++++++++++++++++++++++++++++
 sci-chemistry/aimless/metadata.xml          |  8 ++++
 3 files changed, 85 insertions(+)

diff --git a/sci-chemistry/aimless/ChangeLog b/sci-chemistry/aimless/ChangeLog
new file mode 100644
index 0000000..84b9752
--- /dev/null
+++ b/sci-chemistry/aimless/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-chemistry/aimless
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*aimless-0.1.30 (01 Jun 2013)
+
+  01 Jun 2013; Justin Lecher <jlec@gentoo.org> +aimless-0.1.30.ebuild,
+  +metadata.xml:
+  New package
+

diff --git a/sci-chemistry/aimless/aimless-0.1.30.ebuild b/sci-chemistry/aimless/aimless-0.1.30.ebuild
new file mode 100644
index 0000000..7662ece
--- /dev/null
+++ b/sci-chemistry/aimless/aimless-0.1.30.ebuild
@@ -0,0 +1,67 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit eutils multilib toolchain-funcs
+
+DESCRIPTION="Scale together multiple observations of reflections"
+HOMEPAGE="http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html"
+SRC_URI="ftp://ftp.mrc-lmb.cam.ac.uk/pub/pre/${P}.tar.gz"
+
+SLOT="0"
+LICENSE="ccp4"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+CDEPEND="
+	sci-libs/clipper
+	sci-libs/fftw:2.1
+	sci-libs/libccp4[fortran]
+	sci-libs/mmdb
+	>=sci-libs/cctbx-2013"
+DEPEND="${CDEPEND}
+	virtual/pkgconfig"
+RDEPEND="${CDEPEND}"
+
+S="${WORKDIR}"
+
+src_prepare() {
+	sed \
+		-e "s: ar :$(tc-getAR):g" \
+		-i MinLib/Makefile || die
+	sed \
+		-e 's:ccp4_mtz_io.o::' \
+		-i Makefile.make || die
+}
+
+src_compile() {
+	local myemakeargs=(
+		CC=$(tc-getCC)
+		CXX=$(tc-getCXX)
+		CFLAGS="${CFLAGS}"
+		CXXFLAGS="${CXXFLAGS}"
+		LFLAGS="${LDFLAGS}"
+		CLIB="${EPREFIX}/usr/$(get_libdir)"
+		CCTBX_VERSION=2013
+		ICCP4="$($(tc-getPKG_CONFIG) --cflags libccp4c libccp4f mmdb)"
+		ICLPR="$($(tc-getPKG_CONFIG) --cflags clipper)"
+		ITBX="$($(tc-getPKG_CONFIG) --cflags cctbx)"
+		ITNT="-I${EPREFIX}/usr/include/tntbx/include/"
+		LCCP4="$($(tc-getPKG_CONFIG) --libs libccp4c libccp4f mmdb)"
+		LCLPR="$($(tc-getPKG_CONFIG) --libs clipper)"
+		LTBX="$($(tc-getPKG_CONFIG) --libs cctbx)"
+		SLIB=""
+		)
+	emake \
+		-C MinLib \
+		"${myemakeargs[@]}"
+	emake \
+		-f Makefile.make \
+		"${myemakeargs[@]}"
+}
+
+src_install() {
+	dobin ${PN}
+}

diff --git a/sci-chemistry/aimless/metadata.xml b/sci-chemistry/aimless/metadata.xml
new file mode 100644
index 0000000..5ef07a3
--- /dev/null
+++ b/sci-chemistry/aimless/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci</herd>
+  <maintainer>
+    <email>jlec@gentoo.org</email>
+  </maintainer>
+</pkgmetadata>

[gentoo-commits] proj/sci:ccp4 commit in: sci-chemistry/aimless/

[Justin Lecher]

commit:     bbd2eb0d27ffb0987b0b3b05dbf88750c78b3926
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Jun 12 06:03:01 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jun 12 06:03:01 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=bbd2eb0d

sci-chemistry/aimless: Version Bump

Package-Manager: portage-2.2.0_alpha179

---
 sci-chemistry/aimless/ChangeLog                                     | 6 ++++++
 .../aimless/{aimless-0.1.30.ebuild => aimless-0.2.1.ebuild}         | 3 ---
 2 files changed, 6 insertions(+), 3 deletions(-)

diff --git a/sci-chemistry/aimless/ChangeLog b/sci-chemistry/aimless/ChangeLog
index 84b9752..d321761 100644
--- a/sci-chemistry/aimless/ChangeLog
+++ b/sci-chemistry/aimless/ChangeLog
@@ -2,6 +2,12 @@
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*aimless-0.2.1 (12 Jun 2013)
+
+  12 Jun 2013; Justin Lecher <jlec@gentoo.org> -aimless-0.1.30.ebuild,
+  +aimless-0.2.1.ebuild:
+  Version Bump
+
 *aimless-0.1.30 (01 Jun 2013)
 
   01 Jun 2013; Justin Lecher <jlec@gentoo.org> +aimless-0.1.30.ebuild,

diff --git a/sci-chemistry/aimless/aimless-0.1.30.ebuild b/sci-chemistry/aimless/aimless-0.2.1.ebuild
similarity index 95%
rename from sci-chemistry/aimless/aimless-0.1.30.ebuild
rename to sci-chemistry/aimless/aimless-0.2.1.ebuild
index 7662ece..82f45fc 100644
--- a/sci-chemistry/aimless/aimless-0.1.30.ebuild
+++ b/sci-chemistry/aimless/aimless-0.2.1.ebuild
@@ -31,9 +31,6 @@ src_prepare() {
 	sed \
 		-e "s: ar :$(tc-getAR):g" \
 		-i MinLib/Makefile || die
-	sed \
-		-e 's:ccp4_mtz_io.o::' \
-		-i Makefile.make || die
 }
 
 src_compile() {