* [gentoo-commits] proj/sci:master commit in: sci-chemistry/modelfree/
@ 2013-05-07 10:49 Justin Lecher
0 siblings, 0 replies; 9+ messages in thread
From: Justin Lecher @ 2013-05-07 10:49 UTC (permalink / raw
To: gentoo-commits
commit: ec7d204f430fa558e6545cead9516328282baa1b
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue May 7 10:16:45 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue May 7 10:16:45 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=ec7d204f
sci-chemistry/modelfree: Fix stupid symlink
Package-Manager: portage-2.2.0_alpha174
RepoMan-Options: --force
---
sci-chemistry/modelfree/ChangeLog | 3 +++
sci-chemistry/modelfree/modelfree-4.20.ebuild | 2 +-
2 files changed, 4 insertions(+), 1 deletions(-)
diff --git a/sci-chemistry/modelfree/ChangeLog b/sci-chemistry/modelfree/ChangeLog
index 496cf46..bbbf975 100644
--- a/sci-chemistry/modelfree/ChangeLog
+++ b/sci-chemistry/modelfree/ChangeLog
@@ -3,6 +3,9 @@
# $Header: $
07 May 2013; Justin Lecher <jlec@gentoo.org> modelfree-4.20.ebuild:
+ Fix stupid symlink
+
+ 07 May 2013; Justin Lecher <jlec@gentoo.org> modelfree-4.20.ebuild:
Merge changes from curvefit
03 Mar 2013; Justin Lecher <jlec@gentoo.org> modelfree-4.20.ebuild,
diff --git a/sci-chemistry/modelfree/modelfree-4.20.ebuild b/sci-chemistry/modelfree/modelfree-4.20.ebuild
index b72c61b..0c0c10b 100644
--- a/sci-chemistry/modelfree/modelfree-4.20.ebuild
+++ b/sci-chemistry/modelfree/modelfree-4.20.ebuild
@@ -39,7 +39,7 @@ src_install() {
patchelf --set-rpath "${EPREFIX}/opt/${PN}:${EPREFIX}/usr/$(get_libdir)/gcc/x86_64-pc-linux-gnu/4.1.2/" ${_exe}
doexe ${_exe}
- dosym ${PN} "${EPREFIX}"/opt/bin/${PN}4
+ dosym ${PN}4 "${EPREFIX}"/opt/bin/${PN}
use doc && dodoc docs/{modelfree_manual.pdf,VERSIONS.README}
use examples && insinto /usr/share/${PN} && doins -r testing
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-chemistry/modelfree/
@ 2021-01-10 18:28 Andrew Ammerlaan
0 siblings, 0 replies; 9+ messages in thread
From: Andrew Ammerlaan @ 2021-01-10 18:28 UTC (permalink / raw
To: gentoo-commits
commit: 550a9eb956f86b575a2bec30a14136eab205fb9e
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sun Jan 10 18:27:17 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sun Jan 10 18:27:17 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=550a9eb9
sci-chemistry/modelfree: remove pack, 404, no alternative link
redirects to:
https://www.biochem.cumc.columbia.edu/research-labs/palmer-lab
but can't find a download link
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-chemistry/modelfree/metadata.xml | 11 -------
sci-chemistry/modelfree/modelfree-4.20.ebuild | 47 ---------------------------
2 files changed, 58 deletions(-)
diff --git a/sci-chemistry/modelfree/metadata.xml b/sci-chemistry/modelfree/metadata.xml
deleted file mode 100644
index 713d21566..000000000
--- a/sci-chemistry/modelfree/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>jlec@gentoo.org</email>
- </maintainer>
- <maintainer type="project">
- <email>sci-chemistry@gentoo.org</email>
- <name>Gentoo Chemistry Project</name>
- </maintainer>
-</pkgmetadata>
diff --git a/sci-chemistry/modelfree/modelfree-4.20.ebuild b/sci-chemistry/modelfree/modelfree-4.20.ebuild
deleted file mode 100644
index 3f13a72c5..000000000
--- a/sci-chemistry/modelfree/modelfree-4.20.ebuild
+++ /dev/null
@@ -1,47 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit fortran-2 multilib
-
-DESCRIPTION="Optimizing Lipari-Szabo model free parameters to heteronuclear relaxation data"
-HOMEPAGE="http://www.palmer.hs.columbia.edu/software/modelfree.html"
-SRC_URI="http://www.palmer.hs.columbia.edu/software/modelfree4_linux.tar.gz"
-
-SLOT="0"
-LICENSE="GPL-2"
-KEYWORDS=""
-IUSE="doc examples"
-
-RDEPEND="
- sci-libs/blas-reference
- =sys-devel/gcc-4.1*"
-DEPEND="dev-util/patchelf"
-
-S="${WORKDIR}"
-
-QA_PREBUILT="opt/bin/.*"
-
-src_install() {
- local _exe
- dosym ../../usr/$(get_libdir)/librefblas.so /opt/${PN}/libblas.so.3
- dosym ../../usr/$(get_libdir)/libreflapack.so /opt/${PN}/liblapack.so.3
-
- exeinto /opt/bin
- if use x86; then
- _exe=./linux_32/${PN}4
- elif use amd64; then
- _exe=./linux_64/${PN}4
- fi
-
- patchelf --set-rpath \
- "${EPREFIX}/opt/${PN}:$(gcc-config -L | sed 's|:.*$||g'):${EPREFIX}/usr/$(get_libdir)/gcc/x86_64-pc-linux-gnu/4.1.2/" \
- ${_exe}
-
- doexe ${_exe}
- dosym ${PN}4 /opt/bin/${PN}
-
- use doc && dodoc docs/{modelfree_manual.pdf,VERSIONS.README}
- use examples && insinto /usr/share/${PN} && doins -r testing
-}
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-chemistry/modelfree/
@ 2015-03-30 6:03 Justin Lecher
0 siblings, 0 replies; 9+ messages in thread
From: Justin Lecher @ 2015-03-30 6:03 UTC (permalink / raw
To: gentoo-commits
commit: d91b268b9bdfe75e6b40d5815643016f8ac68765
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Mar 30 06:00:57 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Mar 30 06:00:57 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d91b268b
sci-chemistry/modelfree: Fix for new gcc slotting
Package-Manager: portage-2.2.18
sci-chemistry/modelfree/ChangeLog | 6 ++++--
sci-chemistry/modelfree/modelfree-4.20.ebuild | 4 ++--
2 files changed, 6 insertions(+), 4 deletions(-)
diff --git a/sci-chemistry/modelfree/ChangeLog b/sci-chemistry/modelfree/ChangeLog
index dea5000..b70932c 100644
--- a/sci-chemistry/modelfree/ChangeLog
+++ b/sci-chemistry/modelfree/ChangeLog
@@ -1,7 +1,10 @@
# ChangeLog for sci-chemistry/modelfree
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 30 Mar 2015; Justin Lecher <jlec@gentoo.org> modelfree-4.20.ebuild:
+ sci-chemistry/modelfree: Fix for new gcc slotting
+
13 Nov 2014; Justin Lecher <jlec@gentoo.org> modelfree-4.20.ebuild:
Drop all KEYWORDS due to broken revdeps
@@ -35,4 +38,3 @@
09 Feb 2012; Justin Lecher <jlec@gentoo.org> Manifest:
Add this nasty binary package
-
diff --git a/sci-chemistry/modelfree/modelfree-4.20.ebuild b/sci-chemistry/modelfree/modelfree-4.20.ebuild
index 9dbce61..e848dc3 100644
--- a/sci-chemistry/modelfree/modelfree-4.20.ebuild
+++ b/sci-chemistry/modelfree/modelfree-4.20.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
@@ -17,7 +17,7 @@ IUSE="doc examples"
RDEPEND="
sci-libs/blas-reference
- sys-devel/gcc:4.1"
+ =sys-devel/gcc-4.1*"
DEPEND="dev-util/patchelf"
S="${WORKDIR}"
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-chemistry/modelfree/
@ 2014-11-13 13:15 Justin Lecher
0 siblings, 0 replies; 9+ messages in thread
From: Justin Lecher @ 2014-11-13 13:15 UTC (permalink / raw
To: gentoo-commits
commit: 7dfe49fba5044eff8a28e2422e5e5decf9bea4e2
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Nov 13 13:14:49 2014 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Nov 13 13:14:49 2014 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7dfe49fb
sci-chemistry/modelfree: Drop all KEYWORDS due to broken revdeps
Package-Manager: portage-2.2.14
---
sci-chemistry/modelfree/ChangeLog | 5 ++++-
sci-chemistry/modelfree/modelfree-4.20.ebuild | 2 +-
2 files changed, 5 insertions(+), 2 deletions(-)
diff --git a/sci-chemistry/modelfree/ChangeLog b/sci-chemistry/modelfree/ChangeLog
index 818ee55..dea5000 100644
--- a/sci-chemistry/modelfree/ChangeLog
+++ b/sci-chemistry/modelfree/ChangeLog
@@ -1,7 +1,10 @@
# ChangeLog for sci-chemistry/modelfree
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 13 Nov 2014; Justin Lecher <jlec@gentoo.org> modelfree-4.20.ebuild:
+ Drop all KEYWORDS due to broken revdeps
+
07 May 2013; Justin Lecher <jlec@gentoo.org> modelfree-4.20.ebuild:
Drop double prefix
diff --git a/sci-chemistry/modelfree/modelfree-4.20.ebuild b/sci-chemistry/modelfree/modelfree-4.20.ebuild
index cf5f6f7..9dbce61 100644
--- a/sci-chemistry/modelfree/modelfree-4.20.ebuild
+++ b/sci-chemistry/modelfree/modelfree-4.20.ebuild
@@ -12,7 +12,7 @@ SRC_URI="http://www.palmer.hs.columbia.edu/software/modelfree4_linux.tar.gz"
SLOT="0"
LICENSE="GPL-2"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS=""
IUSE="doc examples"
RDEPEND="
^ permalink raw reply related [flat|nested] 9+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/modelfree/
@ 2013-05-07 11:24 Justin Lecher
0 siblings, 0 replies; 9+ messages in thread
From: Justin Lecher @ 2013-05-07 11:24 UTC (permalink / raw
To: gentoo-commits
commit: a05b3b51644931474be64ca157b2eb96c120088e
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue May 7 10:52:42 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue May 7 10:52:42 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a05b3b51
sci-chemistry/modelfree: Drop double prefix
Package-Manager: portage-2.2.0_alpha174
RepoMan-Options: --force
---
sci-chemistry/modelfree/ChangeLog | 3 +++
sci-chemistry/modelfree/modelfree-4.20.ebuild | 2 +-
2 files changed, 4 insertions(+), 1 deletions(-)
diff --git a/sci-chemistry/modelfree/ChangeLog b/sci-chemistry/modelfree/ChangeLog
index c632638..818ee55 100644
--- a/sci-chemistry/modelfree/ChangeLog
+++ b/sci-chemistry/modelfree/ChangeLog
@@ -3,6 +3,9 @@
# $Header: $
07 May 2013; Justin Lecher <jlec@gentoo.org> modelfree-4.20.ebuild:
+ Drop double prefix
+
+ 07 May 2013; Justin Lecher <jlec@gentoo.org> modelfree-4.20.ebuild:
Fix missing lib dirs for patchelf
07 May 2013; Justin Lecher <jlec@gentoo.org> modelfree-4.20.ebuild:
diff --git a/sci-chemistry/modelfree/modelfree-4.20.ebuild b/sci-chemistry/modelfree/modelfree-4.20.ebuild
index 10a43e3..9cc6e1f 100644
--- a/sci-chemistry/modelfree/modelfree-4.20.ebuild
+++ b/sci-chemistry/modelfree/modelfree-4.20.ebuild
@@ -41,7 +41,7 @@ src_install() {
${_exe}
doexe ${_exe}
- dosym ${PN}4 "${EPREFIX}"/opt/bin/${PN}
+ dosym ${PN}4 /opt/bin/${PN}
use doc && dodoc docs/{modelfree_manual.pdf,VERSIONS.README}
use examples && insinto /usr/share/${PN} && doins -r testing
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-chemistry/modelfree/
@ 2013-05-07 10:49 Justin Lecher
0 siblings, 0 replies; 9+ messages in thread
From: Justin Lecher @ 2013-05-07 10:49 UTC (permalink / raw
To: gentoo-commits
commit: d54b7abe41469c20782dd3d2e0ef5ddd0787bf84
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue May 7 10:48:57 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue May 7 10:48:57 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=d54b7abe
sci-chemistry/modelfree: Fix missing lib dirs for patchelf
Package-Manager: portage-2.2.0_alpha174
RepoMan-Options: --force
---
sci-chemistry/modelfree/ChangeLog | 3 +++
sci-chemistry/modelfree/modelfree-4.20.ebuild | 4 +++-
2 files changed, 6 insertions(+), 1 deletions(-)
diff --git a/sci-chemistry/modelfree/ChangeLog b/sci-chemistry/modelfree/ChangeLog
index bbbf975..c632638 100644
--- a/sci-chemistry/modelfree/ChangeLog
+++ b/sci-chemistry/modelfree/ChangeLog
@@ -3,6 +3,9 @@
# $Header: $
07 May 2013; Justin Lecher <jlec@gentoo.org> modelfree-4.20.ebuild:
+ Fix missing lib dirs for patchelf
+
+ 07 May 2013; Justin Lecher <jlec@gentoo.org> modelfree-4.20.ebuild:
Fix stupid symlink
07 May 2013; Justin Lecher <jlec@gentoo.org> modelfree-4.20.ebuild:
diff --git a/sci-chemistry/modelfree/modelfree-4.20.ebuild b/sci-chemistry/modelfree/modelfree-4.20.ebuild
index 0c0c10b..10a43e3 100644
--- a/sci-chemistry/modelfree/modelfree-4.20.ebuild
+++ b/sci-chemistry/modelfree/modelfree-4.20.ebuild
@@ -36,7 +36,9 @@ src_install() {
_exe=./linux_64/${PN}4
fi
- patchelf --set-rpath "${EPREFIX}/opt/${PN}:${EPREFIX}/usr/$(get_libdir)/gcc/x86_64-pc-linux-gnu/4.1.2/" ${_exe}
+ patchelf --set-rpath \
+ "${EPREFIX}/opt/${PN}:$(gcc-config -L | sed 's|:.*$||g'):${EPREFIX}/usr/$(get_libdir)/gcc/x86_64-pc-linux-gnu/4.1.2/" \
+ ${_exe}
doexe ${_exe}
dosym ${PN}4 "${EPREFIX}"/opt/bin/${PN}
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-chemistry/modelfree/
@ 2013-05-07 10:13 Justin Lecher
0 siblings, 0 replies; 9+ messages in thread
From: Justin Lecher @ 2013-05-07 10:13 UTC (permalink / raw
To: gentoo-commits
commit: 15481c73e161e27792f1173560ea3aa91382347b
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue May 7 10:12:56 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue May 7 10:12:56 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=15481c73
sci-chemistry/modelfree: Merge changes from curvefit
Package-Manager: portage-2.2.0_alpha174
RepoMan-Options: --force
---
sci-chemistry/modelfree/ChangeLog | 3 ++
sci-chemistry/modelfree/modelfree-4.20.ebuild | 29 +++++++++++++------------
2 files changed, 18 insertions(+), 14 deletions(-)
diff --git a/sci-chemistry/modelfree/ChangeLog b/sci-chemistry/modelfree/ChangeLog
index 7d88928..496cf46 100644
--- a/sci-chemistry/modelfree/ChangeLog
+++ b/sci-chemistry/modelfree/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 07 May 2013; Justin Lecher <jlec@gentoo.org> modelfree-4.20.ebuild:
+ Merge changes from curvefit
+
03 Mar 2013; Justin Lecher <jlec@gentoo.org> modelfree-4.20.ebuild,
metadata.xml:
Add missing multilib.eclass; move to EAPI=5
diff --git a/sci-chemistry/modelfree/modelfree-4.20.ebuild b/sci-chemistry/modelfree/modelfree-4.20.ebuild
index c0865fb..b72c61b 100644
--- a/sci-chemistry/modelfree/modelfree-4.20.ebuild
+++ b/sci-chemistry/modelfree/modelfree-4.20.ebuild
@@ -11,34 +11,35 @@ HOMEPAGE="http://www.palmer.hs.columbia.edu/software/modelfree.html"
SRC_URI="http://www.palmer.hs.columbia.edu/software/modelfree4_linux.tar.gz"
SLOT="0"
+LICENSE="GPL-2"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-LICENSE="as-is"
IUSE="doc examples"
-DEPEND=""
RDEPEND="
- sys-devel/gcc:4.1
sci-libs/blas-reference
- sci-libs/lapack-reference
-"
+ sys-devel/gcc:4.1"
+DEPEND="dev-util/patchelf"
S="${WORKDIR}"
+QA_PREBUILT="opt/bin/.*"
+
src_install() {
+ local _exe
dosym ../../usr/$(get_libdir)/librefblas.so /opt/${PN}/libblas.so.3
dosym ../../usr/$(get_libdir)/libreflapack.so /opt/${PN}/liblapack.so.3
- cat >> "${T}"/${PN} <<- EOF
- #!${EPREFIX}/bin/bash
- LD_LIBRARY_PATH="${EPREFIX}/opt/${PN}" "${EPREFIX}/opt/${PN}/${PN}4" \$@
- EOF
-
exeinto /opt/bin
- doexe "${T}"/${PN}
+ if use x86; then
+ _exe=./linux_32/${PN}4
+ elif use amd64; then
+ _exe=./linux_64/${PN}4
+ fi
+
+ patchelf --set-rpath "${EPREFIX}/opt/${PN}:${EPREFIX}/usr/$(get_libdir)/gcc/x86_64-pc-linux-gnu/4.1.2/" ${_exe}
- exeinto /opt/${PN}
- use amd64 && doexe linux_64/${PN}4
- use x86 && doexe linux_32/${PN}4
+ doexe ${_exe}
+ dosym ${PN} "${EPREFIX}"/opt/bin/${PN}4
use doc && dodoc docs/{modelfree_manual.pdf,VERSIONS.README}
use examples && insinto /usr/share/${PN} && doins -r testing
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-chemistry/modelfree/
@ 2012-02-09 11:58 Justin Lecher
0 siblings, 0 replies; 9+ messages in thread
From: Justin Lecher @ 2012-02-09 11:58 UTC (permalink / raw
To: gentoo-commits
commit: ff97be745a5a5d20c0198d7b6f3a18ffbd9e2f24
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Feb 9 11:58:36 2012 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Feb 9 11:58:36 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=ff97be74
Remove double prefix
(Portage version: 2.2.0_alpha85/git/Linux x86_64, RepoMan options: --force, unsigned Manifest commit)
---
sci-chemistry/modelfree/ChangeLog | 6 ++++++
sci-chemistry/modelfree/modelfree-4.20.ebuild | 4 ++--
2 files changed, 8 insertions(+), 2 deletions(-)
diff --git a/sci-chemistry/modelfree/ChangeLog b/sci-chemistry/modelfree/ChangeLog
index 1c72783..7cb4e0d 100644
--- a/sci-chemistry/modelfree/ChangeLog
+++ b/sci-chemistry/modelfree/ChangeLog
@@ -2,6 +2,12 @@
# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 09 Feb 2012; Justin Lecher <jlec@gentoo.org> modelfree-4.20.ebuild:
+ Remove double prefix
+
+ 09 Feb 2012; Justin Lecher <jlec@gentoo.org> modelfree-4.20.ebuild:
+ Remove double prefix
+
*modelfree-4.20 (09 Feb 2012)
09 Feb 2012; Justin Lecher <jlec@gentoo.org> +modelfree-4.20.ebuild,
diff --git a/sci-chemistry/modelfree/modelfree-4.20.ebuild b/sci-chemistry/modelfree/modelfree-4.20.ebuild
index ee77bdc..6f29df7 100644
--- a/sci-chemistry/modelfree/modelfree-4.20.ebuild
+++ b/sci-chemistry/modelfree/modelfree-4.20.ebuild
@@ -25,8 +25,8 @@ RDEPEND="
S="${WORKDIR}"
src_install() {
- dosym ../../usr/$(get_libdir)/librefblas.so "${EPREFIX}/opt/${PN}/libblas.so.3"
- dosym ../../usr/$(get_libdir)/libreflapack.so "${EPREFIX}/opt/${PN}/liblapack.so.3"
+ dosym ../../usr/$(get_libdir)/librefblas.so /opt/${PN}/libblas.so.3
+ dosym ../../usr/$(get_libdir)/libreflapack.so /opt/${PN}/liblapack.so.3
cat >> "${T}"/${PN} <<- EOF
#!${EPREFIX}/bin/bash
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-chemistry/modelfree/
@ 2012-02-09 11:56 Justin Lecher
0 siblings, 0 replies; 9+ messages in thread
From: Justin Lecher @ 2012-02-09 11:56 UTC (permalink / raw
To: gentoo-commits
commit: dfe28d698ce2d1f3619e6441f9539df6481c322c
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Feb 9 11:55:07 2012 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Feb 9 11:55:07 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=dfe28d69
Add this nasty binary package
(Portage version: 2.2.0_alpha85/git/Linux x86_64, RepoMan options: --force, unsigned Manifest commit)
---
sci-chemistry/modelfree/ChangeLog | 13 +++++++
sci-chemistry/modelfree/metadata.xml | 8 ++++
sci-chemistry/modelfree/modelfree-4.20.ebuild | 45 +++++++++++++++++++++++++
3 files changed, 66 insertions(+), 0 deletions(-)
diff --git a/sci-chemistry/modelfree/ChangeLog b/sci-chemistry/modelfree/ChangeLog
new file mode 100644
index 0000000..1c72783
--- /dev/null
+++ b/sci-chemistry/modelfree/ChangeLog
@@ -0,0 +1,13 @@
+# ChangeLog for sci-chemistry/modelfree
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*modelfree-4.20 (09 Feb 2012)
+
+ 09 Feb 2012; Justin Lecher <jlec@gentoo.org> +modelfree-4.20.ebuild,
+ +metadata.xml:
+ Add this nasty binary package
+
+ 09 Feb 2012; Justin Lecher <jlec@gentoo.org> Manifest:
+ Add this nasty binary package
+
diff --git a/sci-chemistry/modelfree/metadata.xml b/sci-chemistry/modelfree/metadata.xml
new file mode 100644
index 0000000..210ad0d
--- /dev/null
+++ b/sci-chemistry/modelfree/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci</herd>
+ <maintainer>
+ <email>jlec@gentoo.org</email>
+ </maintainer>
+</pkgmetadata>
diff --git a/sci-chemistry/modelfree/modelfree-4.20.ebuild b/sci-chemistry/modelfree/modelfree-4.20.ebuild
new file mode 100644
index 0000000..ee77bdc
--- /dev/null
+++ b/sci-chemistry/modelfree/modelfree-4.20.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=4
+
+inherit fortran-2
+
+DESCRIPTION="A program for optimizing Lipari-Szabo model free parameters to heteronuclear relaxation data"
+HOMEPAGE="http://www.palmer.hs.columbia.edu/software/modelfree.html"
+SRC_URI="http://www.palmer.hs.columbia.edu/software/modelfree4_linux.tar.gz"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+LICENSE="as-is"
+IUSE="doc examples"
+
+DEPEND=""
+RDEPEND="
+ sys-devel/gcc:4.1
+ sci-libs/blas-reference
+ sci-libs/lapack-reference
+"
+
+S="${WORKDIR}"
+
+src_install() {
+ dosym ../../usr/$(get_libdir)/librefblas.so "${EPREFIX}/opt/${PN}/libblas.so.3"
+ dosym ../../usr/$(get_libdir)/libreflapack.so "${EPREFIX}/opt/${PN}/liblapack.so.3"
+
+ cat >> "${T}"/${PN} <<- EOF
+ #!${EPREFIX}/bin/bash
+ LD_LIBRARY_PATH="${EPREFIX}/opt/${PN}" "${EPREFIX}/opt/${PN}/${PN}4" \$@
+ EOF
+
+ exeinto /opt/bin
+ doexe "${T}"/${PN}
+
+ exeinto /opt/${PN}
+ use amd64 && doexe linux_64/${PN}4
+ use x86 && doexe linux_32/${PN}4
+
+ use doc && dodoc docs/{modelfree_manual.pdf,VERSIONS.README}
+ use examples && insinto /usr/share/${PN} && doins -r testing
+}
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