* [gentoo-commits] proj/sci:master commit in: sci-libs/cs-rosetta-db/
@ 2013-03-21 6:54 Justin Lecher
0 siblings, 0 replies; 4+ messages in thread
From: Justin Lecher @ 2013-03-21 6:54 UTC (permalink / raw
To: gentoo-commits
commit: 53e987433d63d1a90a10d5dbf5b8942b85c177de
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Mar 20 14:55:27 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Mar 20 14:55:27 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=53e98743
sci-libs/cs-rosetta-db: New addition
Package-Manager: portage-2.2.0_alpha166
---
sci-libs/cs-rosetta-db/ChangeLog | 10 +++
.../cs-rosetta-db-1.01.2009.1109.11.ebuild | 59 ++++++++++++++++++++
sci-libs/cs-rosetta-db/metadata.xml | 5 ++
3 files changed, 74 insertions(+), 0 deletions(-)
diff --git a/sci-libs/cs-rosetta-db/ChangeLog b/sci-libs/cs-rosetta-db/ChangeLog
new file mode 100644
index 0000000..dcd6a5f
--- /dev/null
+++ b/sci-libs/cs-rosetta-db/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-libs/cs-rosetta-db
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*cs-rosetta-db-1.01.2009.1109.11 (20 Mar 2013)
+
+ 20 Mar 2013; Justin Lecher <jlec@gentoo.org>
+ +cs-rosetta-db-1.01.2009.1109.11.ebuild, +metadata.xml:
+ New addition
+
diff --git a/sci-libs/cs-rosetta-db/cs-rosetta-db-1.01.2009.1109.11.ebuild b/sci-libs/cs-rosetta-db/cs-rosetta-db-1.01.2009.1109.11.ebuild
new file mode 100644
index 0000000..43bb9cf
--- /dev/null
+++ b/sci-libs/cs-rosetta-db/cs-rosetta-db-1.01.2009.1109.11.ebuild
@@ -0,0 +1,59 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit flag-o-matic toolchain-funcs
+
+DESCRIPTION="System for chemical shifts based protein structure prediction using ROSETTA"
+HOMEPAGE="http://spin.niddk.nih.gov/bax/software/CSROSETTA/"
+SRC_URI="
+ http://spin.niddk.nih.gov/bax/software/CSROSETTA/PDBH.tar.Z -> ${P}-PDBH.tar.Z
+ http://spin.niddk.nih.gov/bax/software/CSROSETTA/hybrid/PDBH.hyb.tar.gz -> ${P}-PDBH.hyb.tar.gz
+ http://spin.niddk.nih.gov/bax/software/CSROSETTA/CS.tar.Z -> ${P}-CS.tar.Z
+ http://spin.niddk.nih.gov/bax/software/CSROSETTA/hybrid/CS.hyb.tar.gz -> ${P}-CS.hyb.tar.gz
+ http://spin.niddk.nih.gov/bax/software/CSROSETTA/ANGLESS.tar.Z -> ${P}-ANGLESS.tar.Z
+ http://spin.niddk.nih.gov/bax/software/CSROSETTA/hybrid/ANGLESS.hyb.tar.gz -> ${P}-ANGLESS.hyb.tar.gz
+ http://spin.niddk.nih.gov/bax/software/CSROSETTA/hybrid/vall.dat.apr24.gz -> ${P}-vall.dat.apr24.gz"
+
+SLOT="0"
+LICENSE="all-rights-reserved"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+RESTRICT="binchecks mirror strip"
+
+S="${WORKDIR}"
+
+src_unpack() {
+ local i
+ unpack ${P}-{PDBH,CS,ANGLESS}.hyb.tar.gz
+
+ for i in *; do
+ mv -v ${i}{,.hyb} || die
+ done
+
+ unpack ${P}-vall.dat.apr24.gz
+ mv ${P}-vall.dat.apr24 vall.dat.apr24 || die
+
+ unpack ${P}-{PDBH,CS,ANGLESS}.tar.Z
+}
+
+src_prepare() {
+ cat >> "${T}"/39${PN} <<- EOF
+ CS_DIR="${EPREFIX}/opt/${PN}/CS"
+ CSHYB_DIR="${EPREFIX}/opt/${PN}/CS"
+ PDBH_DIR="${EPREFIX}/opt/${PN}/PDBH"
+ PDBHYB_DIR="${EPREFIX}/opt/${PN}/PDBH"
+ PDBH_TAB="${EPREFIX}/opt/${PN}/PDBH/resolution.tab"
+ ANGLESS_DIR="${EPREFIX}/opt/${PN}/ANGLESS"
+ ANGLESSHYB_DIR="${EPREFIX}/opt/${PN}/ANGLESS"
+ EOF
+}
+
+src_install() {
+ insinto /opt/${PN}/
+ doins -r *
+ doenvd "${T}"/39${PN}
+}
diff --git a/sci-libs/cs-rosetta-db/metadata.xml b/sci-libs/cs-rosetta-db/metadata.xml
new file mode 100644
index 0000000..897aa2e
--- /dev/null
+++ b/sci-libs/cs-rosetta-db/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci</herd>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/cs-rosetta-db/
@ 2013-03-22 8:14 Justin Lecher
0 siblings, 0 replies; 4+ messages in thread
From: Justin Lecher @ 2013-03-22 8:14 UTC (permalink / raw
To: gentoo-commits
commit: a946b15264888636132903fa3f37e8558c7816e6
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Mar 22 07:09:34 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Mar 22 07:09:34 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a946b152
sci-libs/cs-rosetta-db: Correct installation directory to mach the main package
Package-Manager: portage-2.2.0_alpha166
---
sci-libs/cs-rosetta-db/ChangeLog | 4 ++++
.../cs-rosetta-db-1.01.2009.1109.11.ebuild | 18 ++++++++++--------
2 files changed, 14 insertions(+), 8 deletions(-)
diff --git a/sci-libs/cs-rosetta-db/ChangeLog b/sci-libs/cs-rosetta-db/ChangeLog
index dcd6a5f..de99a62 100644
--- a/sci-libs/cs-rosetta-db/ChangeLog
+++ b/sci-libs/cs-rosetta-db/ChangeLog
@@ -2,6 +2,10 @@
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 22 Mar 2013; Justin Lecher <jlec@gentoo.org>
+ cs-rosetta-db-1.01.2009.1109.11.ebuild:
+ Correct installation directory to mach the main package
+
*cs-rosetta-db-1.01.2009.1109.11 (20 Mar 2013)
20 Mar 2013; Justin Lecher <jlec@gentoo.org>
diff --git a/sci-libs/cs-rosetta-db/cs-rosetta-db-1.01.2009.1109.11.ebuild b/sci-libs/cs-rosetta-db/cs-rosetta-db-1.01.2009.1109.11.ebuild
index 43bb9cf..45a13af 100644
--- a/sci-libs/cs-rosetta-db/cs-rosetta-db-1.01.2009.1109.11.ebuild
+++ b/sci-libs/cs-rosetta-db/cs-rosetta-db-1.01.2009.1109.11.ebuild
@@ -6,6 +6,8 @@ EAPI=5
inherit flag-o-matic toolchain-funcs
+MY_PN="${PN%-db}"
+
DESCRIPTION="System for chemical shifts based protein structure prediction using ROSETTA"
HOMEPAGE="http://spin.niddk.nih.gov/bax/software/CSROSETTA/"
SRC_URI="
@@ -42,18 +44,18 @@ src_unpack() {
src_prepare() {
cat >> "${T}"/39${PN} <<- EOF
- CS_DIR="${EPREFIX}/opt/${PN}/CS"
- CSHYB_DIR="${EPREFIX}/opt/${PN}/CS"
- PDBH_DIR="${EPREFIX}/opt/${PN}/PDBH"
- PDBHYB_DIR="${EPREFIX}/opt/${PN}/PDBH"
- PDBH_TAB="${EPREFIX}/opt/${PN}/PDBH/resolution.tab"
- ANGLESS_DIR="${EPREFIX}/opt/${PN}/ANGLESS"
- ANGLESSHYB_DIR="${EPREFIX}/opt/${PN}/ANGLESS"
+ CS_DIR="${EPREFIX}/opt/${MY_PN}/CS"
+ CSHYB_DIR="${EPREFIX}/opt/${MY_PN}/CS"
+ PDBH_DIR="${EPREFIX}/opt/${MY_PN}/PDBH"
+ PDBHYB_DIR="${EPREFIX}/opt/${MY_PN}/PDBH"
+ PDBH_TAB="${EPREFIX}/opt/${MY_PN}/PDBH/resolution.tab"
+ ANGLESS_DIR="${EPREFIX}/opt/${MY_PN}/ANGLESS"
+ ANGLESSHYB_DIR="${EPREFIX}/opt/${MY_PN}/ANGLESS"
EOF
}
src_install() {
- insinto /opt/${PN}/
+ insinto /opt/${MY_PN}/
doins -r *
doenvd "${T}"/39${PN}
}
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/cs-rosetta-db/
@ 2021-02-05 11:51 Andrew Ammerlaan
0 siblings, 0 replies; 4+ messages in thread
From: Andrew Ammerlaan @ 2021-02-05 11:51 UTC (permalink / raw
To: gentoo-commits
commit: ac7a0b13713bfbb85648bf2e9ca8342fac0178fc
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Fri Feb 5 11:44:09 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Fri Feb 5 11:44:09 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ac7a0b13
sci-libs/cs-rosetta-db: use https
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
.../cs-rosetta-db-1.01.2009.1109.11.ebuild | 18 +++++++++---------
1 file changed, 9 insertions(+), 9 deletions(-)
diff --git a/sci-libs/cs-rosetta-db/cs-rosetta-db-1.01.2009.1109.11.ebuild b/sci-libs/cs-rosetta-db/cs-rosetta-db-1.01.2009.1109.11.ebuild
index 16b1149ab..1e98cf582 100644
--- a/sci-libs/cs-rosetta-db/cs-rosetta-db-1.01.2009.1109.11.ebuild
+++ b/sci-libs/cs-rosetta-db/cs-rosetta-db-1.01.2009.1109.11.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -8,15 +8,15 @@ inherit flag-o-matic toolchain-funcs
MY_PN="${PN%-db}"
DESCRIPTION="System for chemical shifts based protein structure prediction using ROSETTA"
-HOMEPAGE="http://spin.niddk.nih.gov/bax/software/CSROSETTA/"
+HOMEPAGE="https://spin.niddk.nih.gov/bax/software/CSROSETTA/"
SRC_URI="
- http://spin.niddk.nih.gov/bax/software/CSROSETTA/PDBH.tar.Z -> ${P}-PDBH.tar.Z
- http://spin.niddk.nih.gov/bax/software/CSROSETTA/hybrid/PDBH.hyb.tar.gz -> ${P}-PDBH.hyb.tar.gz
- http://spin.niddk.nih.gov/bax/software/CSROSETTA/CS.tar.Z -> ${P}-CS.tar.Z
- http://spin.niddk.nih.gov/bax/software/CSROSETTA/hybrid/CS.hyb.tar.gz -> ${P}-CS.hyb.tar.gz
- http://spin.niddk.nih.gov/bax/software/CSROSETTA/ANGLESS.tar.Z -> ${P}-ANGLESS.tar.Z
- http://spin.niddk.nih.gov/bax/software/CSROSETTA/hybrid/ANGLESS.hyb.tar.gz -> ${P}-ANGLESS.hyb.tar.gz
- http://spin.niddk.nih.gov/bax/software/CSROSETTA/hybrid/vall.dat.apr24.gz -> ${P}-vall.dat.apr24.gz"
+ https://spin.niddk.nih.gov/bax/software/CSROSETTA/PDBH.tar.Z -> ${P}-PDBH.tar.Z
+ https://spin.niddk.nih.gov/bax/software/CSROSETTA/hybrid/PDBH.hyb.tar.gz -> ${P}-PDBH.hyb.tar.gz
+ https://spin.niddk.nih.gov/bax/software/CSROSETTA/CS.tar.Z -> ${P}-CS.tar.Z
+ https://spin.niddk.nih.gov/bax/software/CSROSETTA/hybrid/CS.hyb.tar.gz -> ${P}-CS.hyb.tar.gz
+ https://spin.niddk.nih.gov/bax/software/CSROSETTA/ANGLESS.tar.Z -> ${P}-ANGLESS.tar.Z
+ https://spin.niddk.nih.gov/bax/software/CSROSETTA/hybrid/ANGLESS.hyb.tar.gz -> ${P}-ANGLESS.hyb.tar.gz
+ https://spin.niddk.nih.gov/bax/software/CSROSETTA/hybrid/vall.dat.apr24.gz -> ${P}-vall.dat.apr24.gz"
SLOT="0"
LICENSE="all-rights-reserved"
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/cs-rosetta-db/
@ 2021-03-04 19:52 Andrew Ammerlaan
0 siblings, 0 replies; 4+ messages in thread
From: Andrew Ammerlaan @ 2021-03-04 19:52 UTC (permalink / raw
To: gentoo-commits
commit: 37a605aedd484d1d5010cc29efedb20ebea70180
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Thu Mar 4 19:51:57 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Thu Mar 4 19:51:57 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=37a605ae
sci-libs/cs-rosetta-db: version bump 2.01
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
...-db-1.01.2009.1109.11.ebuild => cs-rosetta-db-2.01.2019.06.ebuild} | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-libs/cs-rosetta-db/cs-rosetta-db-1.01.2009.1109.11.ebuild b/sci-libs/cs-rosetta-db/cs-rosetta-db-2.01.2019.06.ebuild
similarity index 99%
rename from sci-libs/cs-rosetta-db/cs-rosetta-db-1.01.2009.1109.11.ebuild
rename to sci-libs/cs-rosetta-db/cs-rosetta-db-2.01.2019.06.ebuild
index 1e98cf582..cb521f546 100644
--- a/sci-libs/cs-rosetta-db/cs-rosetta-db-1.01.2009.1109.11.ebuild
+++ b/sci-libs/cs-rosetta-db/cs-rosetta-db-2.01.2019.06.ebuild
@@ -1,7 +1,7 @@
# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
inherit flag-o-matic toolchain-funcs
@@ -21,7 +21,6 @@ SRC_URI="
SLOT="0"
LICENSE="all-rights-reserved"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
RESTRICT="binchecks mirror strip"
@@ -42,6 +41,7 @@ src_unpack() {
}
src_prepare() {
+ default
cat >> "${T}"/39${PN} <<- EOF
CS_DIR="${EPREFIX}/opt/${MY_PN}/CS"
CSHYB_DIR="${EPREFIX}/opt/${MY_PN}/CS"
^ permalink raw reply related [flat|nested] 4+ messages in thread
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