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Thu, 21 Mar 2013 06:54:41 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1363791327.53e987433d63d1a90a10d5dbf5b8942b85c177de.jlec@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-libs/cs-rosetta-db/ X-VCS-Repository: proj/sci X-VCS-Files: sci-libs/cs-rosetta-db/ChangeLog sci-libs/cs-rosetta-db/cs-rosetta-db-1.01.2009.1109.11.ebuild sci-libs/cs-rosetta-db/metadata.xml X-VCS-Directories: sci-libs/cs-rosetta-db/ X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: 53e987433d63d1a90a10d5dbf5b8942b85c177de X-VCS-Branch: master Date: Thu, 21 Mar 2013 06:54:41 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: a70a3251-0041-4a6c-8192-40ca86297a98 X-Archives-Hash: 83b58ae37e419da7f4a95ea55360a76f commit: 53e987433d63d1a90a10d5dbf5b8942b85c177de Author: Justin Lecher gentoo org> AuthorDate: Wed Mar 20 14:55:27 2013 +0000 Commit: Justin Lecher gentoo org> CommitDate: Wed Mar 20 14:55:27 2013 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=53e98743 sci-libs/cs-rosetta-db: New addition Package-Manager: portage-2.2.0_alpha166 --- sci-libs/cs-rosetta-db/ChangeLog | 10 +++ .../cs-rosetta-db-1.01.2009.1109.11.ebuild | 59 ++++++++++++++++++++ sci-libs/cs-rosetta-db/metadata.xml | 5 ++ 3 files changed, 74 insertions(+), 0 deletions(-) diff --git a/sci-libs/cs-rosetta-db/ChangeLog b/sci-libs/cs-rosetta-db/ChangeLog new file mode 100644 index 0000000..dcd6a5f --- /dev/null +++ b/sci-libs/cs-rosetta-db/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-libs/cs-rosetta-db +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*cs-rosetta-db-1.01.2009.1109.11 (20 Mar 2013) + + 20 Mar 2013; Justin Lecher + +cs-rosetta-db-1.01.2009.1109.11.ebuild, +metadata.xml: + New addition + diff --git a/sci-libs/cs-rosetta-db/cs-rosetta-db-1.01.2009.1109.11.ebuild b/sci-libs/cs-rosetta-db/cs-rosetta-db-1.01.2009.1109.11.ebuild new file mode 100644 index 0000000..43bb9cf --- /dev/null +++ b/sci-libs/cs-rosetta-db/cs-rosetta-db-1.01.2009.1109.11.ebuild @@ -0,0 +1,59 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit flag-o-matic toolchain-funcs + +DESCRIPTION="System for chemical shifts based protein structure prediction using ROSETTA" +HOMEPAGE="http://spin.niddk.nih.gov/bax/software/CSROSETTA/" +SRC_URI=" + http://spin.niddk.nih.gov/bax/software/CSROSETTA/PDBH.tar.Z -> ${P}-PDBH.tar.Z + http://spin.niddk.nih.gov/bax/software/CSROSETTA/hybrid/PDBH.hyb.tar.gz -> ${P}-PDBH.hyb.tar.gz + http://spin.niddk.nih.gov/bax/software/CSROSETTA/CS.tar.Z -> ${P}-CS.tar.Z + http://spin.niddk.nih.gov/bax/software/CSROSETTA/hybrid/CS.hyb.tar.gz -> ${P}-CS.hyb.tar.gz + http://spin.niddk.nih.gov/bax/software/CSROSETTA/ANGLESS.tar.Z -> ${P}-ANGLESS.tar.Z + http://spin.niddk.nih.gov/bax/software/CSROSETTA/hybrid/ANGLESS.hyb.tar.gz -> ${P}-ANGLESS.hyb.tar.gz + http://spin.niddk.nih.gov/bax/software/CSROSETTA/hybrid/vall.dat.apr24.gz -> ${P}-vall.dat.apr24.gz" + +SLOT="0" +LICENSE="all-rights-reserved" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RESTRICT="binchecks mirror strip" + +S="${WORKDIR}" + +src_unpack() { + local i + unpack ${P}-{PDBH,CS,ANGLESS}.hyb.tar.gz + + for i in *; do + mv -v ${i}{,.hyb} || die + done + + unpack ${P}-vall.dat.apr24.gz + mv ${P}-vall.dat.apr24 vall.dat.apr24 || die + + unpack ${P}-{PDBH,CS,ANGLESS}.tar.Z +} + +src_prepare() { + cat >> "${T}"/39${PN} <<- EOF + CS_DIR="${EPREFIX}/opt/${PN}/CS" + CSHYB_DIR="${EPREFIX}/opt/${PN}/CS" + PDBH_DIR="${EPREFIX}/opt/${PN}/PDBH" + PDBHYB_DIR="${EPREFIX}/opt/${PN}/PDBH" + PDBH_TAB="${EPREFIX}/opt/${PN}/PDBH/resolution.tab" + ANGLESS_DIR="${EPREFIX}/opt/${PN}/ANGLESS" + ANGLESSHYB_DIR="${EPREFIX}/opt/${PN}/ANGLESS" + EOF +} + +src_install() { + insinto /opt/${PN}/ + doins -r * + doenvd "${T}"/39${PN} +} diff --git a/sci-libs/cs-rosetta-db/metadata.xml b/sci-libs/cs-rosetta-db/metadata.xml new file mode 100644 index 0000000..897aa2e --- /dev/null +++ b/sci-libs/cs-rosetta-db/metadata.xml @@ -0,0 +1,5 @@ + + + + sci +