[gentoo-commits] proj/sci:master commit in: sci-libs/cs-rosetta-db/

["Justin Lecher" <jlec@gentoo.org>]

commit:     53e987433d63d1a90a10d5dbf5b8942b85c177de
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Mar 20 14:55:27 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Mar 20 14:55:27 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=53e98743

sci-libs/cs-rosetta-db: New addition

Package-Manager: portage-2.2.0_alpha166

---
 sci-libs/cs-rosetta-db/ChangeLog                   |   10 +++
 .../cs-rosetta-db-1.01.2009.1109.11.ebuild         |   59 ++++++++++++++++++++
 sci-libs/cs-rosetta-db/metadata.xml                |    5 ++
 3 files changed, 74 insertions(+), 0 deletions(-)

diff --git a/sci-libs/cs-rosetta-db/ChangeLog b/sci-libs/cs-rosetta-db/ChangeLog
new file mode 100644
index 0000000..dcd6a5f
--- /dev/null
+++ b/sci-libs/cs-rosetta-db/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-libs/cs-rosetta-db
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*cs-rosetta-db-1.01.2009.1109.11 (20 Mar 2013)
+
+  20 Mar 2013; Justin Lecher <jlec@gentoo.org>
+  +cs-rosetta-db-1.01.2009.1109.11.ebuild, +metadata.xml:
+  New addition
+

diff --git a/sci-libs/cs-rosetta-db/cs-rosetta-db-1.01.2009.1109.11.ebuild b/sci-libs/cs-rosetta-db/cs-rosetta-db-1.01.2009.1109.11.ebuild
new file mode 100644
index 0000000..43bb9cf
--- /dev/null
+++ b/sci-libs/cs-rosetta-db/cs-rosetta-db-1.01.2009.1109.11.ebuild
@@ -0,0 +1,59 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit flag-o-matic toolchain-funcs
+
+DESCRIPTION="System for chemical shifts based protein structure prediction using ROSETTA"
+HOMEPAGE="http://spin.niddk.nih.gov/bax/software/CSROSETTA/"
+SRC_URI="
+	http://spin.niddk.nih.gov/bax/software/CSROSETTA/PDBH.tar.Z -> ${P}-PDBH.tar.Z
+	http://spin.niddk.nih.gov/bax/software/CSROSETTA/hybrid/PDBH.hyb.tar.gz ->  ${P}-PDBH.hyb.tar.gz
+	http://spin.niddk.nih.gov/bax/software/CSROSETTA/CS.tar.Z -> ${P}-CS.tar.Z
+	http://spin.niddk.nih.gov/bax/software/CSROSETTA/hybrid/CS.hyb.tar.gz -> ${P}-CS.hyb.tar.gz
+	http://spin.niddk.nih.gov/bax/software/CSROSETTA/ANGLESS.tar.Z -> ${P}-ANGLESS.tar.Z
+	http://spin.niddk.nih.gov/bax/software/CSROSETTA/hybrid/ANGLESS.hyb.tar.gz -> ${P}-ANGLESS.hyb.tar.gz
+	http://spin.niddk.nih.gov/bax/software/CSROSETTA/hybrid/vall.dat.apr24.gz -> ${P}-vall.dat.apr24.gz"
+
+SLOT="0"
+LICENSE="all-rights-reserved"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+RESTRICT="binchecks mirror strip"
+
+S="${WORKDIR}"
+
+src_unpack() {
+	local i
+	unpack ${P}-{PDBH,CS,ANGLESS}.hyb.tar.gz
+
+	for i in *; do
+		mv -v ${i}{,.hyb} || die
+	done
+
+	unpack ${P}-vall.dat.apr24.gz
+	mv ${P}-vall.dat.apr24 vall.dat.apr24 || die
+
+	unpack ${P}-{PDBH,CS,ANGLESS}.tar.Z
+}
+
+src_prepare() {
+	cat >> "${T}"/39${PN} <<- EOF
+	CS_DIR="${EPREFIX}/opt/${PN}/CS"
+	CSHYB_DIR="${EPREFIX}/opt/${PN}/CS"
+	PDBH_DIR="${EPREFIX}/opt/${PN}/PDBH"
+	PDBHYB_DIR="${EPREFIX}/opt/${PN}/PDBH"
+	PDBH_TAB="${EPREFIX}/opt/${PN}/PDBH/resolution.tab"
+	ANGLESS_DIR="${EPREFIX}/opt/${PN}/ANGLESS"
+	ANGLESSHYB_DIR="${EPREFIX}/opt/${PN}/ANGLESS"
+	EOF
+}
+
+src_install() {
+	insinto /opt/${PN}/
+	doins -r *
+	doenvd "${T}"/39${PN}
+}

diff --git a/sci-libs/cs-rosetta-db/metadata.xml b/sci-libs/cs-rosetta-db/metadata.xml
new file mode 100644
index 0000000..897aa2e
--- /dev/null
+++ b/sci-libs/cs-rosetta-db/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci</herd>
+</pkgmetadata>