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Sun, 3 Mar 2013 17:52:32 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1362328330.49b25fad765eaac9aed591426a7554281ca070db.jlec@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/ncbi-tools++/ChangeLog sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild X-VCS-Directories: sci-biology/ncbi-tools++/ X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: 49b25fad765eaac9aed591426a7554281ca070db X-VCS-Branch: master Date: Sun, 3 Mar 2013 17:52:32 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 2ea49b0b-987b-4a33-98fd-d989fcaeee66 X-Archives-Hash: 801af0d4d3e42400556de0ee5292b5b5 commit: 49b25fad765eaac9aed591426a7554281ca070db Author: Justin Lecher gentoo org> AuthorDate: Sun Mar 3 16:32:10 2013 +0000 Commit: Justin Lecher gentoo org> CommitDate: Sun Mar 3 16:32:10 2013 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=49b25fad sci-biology/ncbi-tools++: Clean whitespace errors Package-Manager: portage-2.2.0_alpha164 RepoMan-Options: --force --- sci-biology/ncbi-tools++/ChangeLog | 4 ++++ .../ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild | 8 +++----- sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild | 6 ++---- 3 files changed, 9 insertions(+), 9 deletions(-) diff --git a/sci-biology/ncbi-tools++/ChangeLog b/sci-biology/ncbi-tools++/ChangeLog index 2a2744a..99af26d 100644 --- a/sci-biology/ncbi-tools++/ChangeLog +++ b/sci-biology/ncbi-tools++/ChangeLog @@ -2,6 +2,10 @@ # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 03 Mar 2013; Justin Lecher ncbi-tools++-9.0.0.ebuild, + ncbi-tools++-9.0.0-r1.ebuild: + Clean whitespace errors + 03 Mar 2013; Justin Lecher +metadata.xml: Add metadata.xml diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild index 439e917..eada94b 100644 --- a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild +++ b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2012 Gentoo Foundation +# Copyright 1999-2013 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-0.2010.06.15-r1.ebuild,v 1.3 2012/11/05 11:22:49 jlec Exp $ @@ -12,7 +12,6 @@ MY_PV="9_0_0" MY_P="ncbi_cxx--${MY_PV}" #ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools++/ARCHIVE/9_0_0/ncbi_cxx--9_0_0.tar.gz - DESCRIPTION="NCBI C++ Toolkit, including NCBI BLAST+" HOMEPAGE="http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit" SRC_URI=" @@ -24,7 +23,7 @@ SLOT="0" IUSE=" debug static-libs static threads pch test wxwidgets odbc - berkdb boost bzip2 cppunit curl expat fastcgi fltk freetype ftds gif + berkdb boost bzip2 cppunit curl expat fastcgi fltk freetype ftds gif glut gnutls hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python sablotron sqlite sqlite3 ssl tiff xerces xalan xml xpm xslt X" #KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" @@ -90,7 +89,6 @@ src_prepare() { # "${FILESDIR}"/${PN}-${PV#0.}-disable_test_compress.patch - # "${FILESDIR}"/${PN}-${PV#0.}-gcc46.patch \ # "${FILESDIR}"/${PN}-${PV#0.}-gcc47.patch \ # "${WORKDIR}"/${PN}-${PV#0.}-asneeded.patch \ @@ -243,7 +241,7 @@ src_configure() { use test || myconf+=( --with-projects="${FILESDIR}"/disable-testsuite-compilation.txt ) # TODO - # copy optimization -O options from CXXFLAGS to DEF_FAST_FLAGS and pass that also to configure + # copy optimization -O options from CXXFLAGS to DEF_FAST_FLAGS and pass that also to configure # otherwise your -O2 will be dropped in some subdirectories and repalced by e.g. -O9 einfo "bash ./src/build-system/configure --srcdir="${S}" --prefix="${EPREFIX}"/usr --libdir=/usr/lib64 ${myconf[@]}" diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild index f93b1aa..09f183a 100644 --- a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild +++ b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2012 Gentoo Foundation +# Copyright 1999-2013 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-0.2010.06.15-r1.ebuild,v 1.3 2012/11/05 11:22:49 jlec Exp $ @@ -12,7 +12,6 @@ MY_PV="9_0_0" MY_P="ncbi_cxx--${MY_PV}" #ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools++/ARCHIVE/9_0_0/ncbi_cxx--9_0_0.tar.gz - DESCRIPTION="NCBI C++ Toolkit, including NCBI BLAST+" HOMEPAGE="http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit" SRC_URI=" @@ -148,7 +147,6 @@ src_prepare() { # "${FILESDIR}"/${PN}-${PV#0.}-disable_test_compress.patch - # "${FILESDIR}"/${PN}-${PV#0.}-gcc46.patch \ # "${FILESDIR}"/${PN}-${PV#0.}-gcc47.patch \ # "${WORKDIR}"/${PN}-${PV#0.}-asneeded.patch \ @@ -271,7 +269,7 @@ src_configure() { fi # TODO - # copy optimization -O options from CXXFLAGS to DEF_FAST_FLAGS and pass that also to configure + # copy optimization -O options from CXXFLAGS to DEF_FAST_FLAGS and pass that also to configure # otherwise your -O2 will be dropped in some subdirectories and repalced by e.g. -O9 "${S}"/configure --without-debug \