[gentoo-commits] proj/sci:master commit in: sci-chemistry/vmd/

["Justin Lecher" <jlec@gentoo.org>]

commit:     df3026d93bc5980f71284d27b0290004625e8c26
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Jan 11 13:48:56 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Jan 11 13:48:56 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=df3026d9

moved to tree
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

---
 sci-chemistry/vmd/ChangeLog           |  244 ---------------------------------
 sci-chemistry/vmd/metadata.xml        |   15 --
 sci-chemistry/vmd/vmd-1.9.1-r1.ebuild |  226 ------------------------------
 3 files changed, 0 insertions(+), 485 deletions(-)

diff --git a/sci-chemistry/vmd/ChangeLog b/sci-chemistry/vmd/ChangeLog
deleted file mode 100644
index 296c399..0000000
--- a/sci-chemistry/vmd/ChangeLog
+++ /dev/null
@@ -1,244 +0,0 @@
-# ChangeLog for sci-chemistry/vmd
-# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/ChangeLog,v 1.50 2012/11/14 15:18:58 jlec Exp $
-
-  23 Dec 2012; Christoph Junghans <ottxor@gentoo.org> vmd-1.9.1-r1.ebuild:
-  fix build with !cuda and python=3 + qa
-
-  29 Nov 2012; Justin Lecher <jlec@gentoo.org> vmd-1.9.1-r1.ebuild:
-  Drop dep on old tk
-
-  26 Nov 2012; Justin Lecher <jlec@gentoo.org> vmd-1.9.1-r1.ebuild:
-  Using new cuda.eclass
-
-*vmd-1.9.1-r1 (14 Nov 2012)
-
-  14 Nov 2012; Justin Lecher <jlec@gentoo.org> +vmd-1.9.1-r1.ebuild:
-  Fix detection of netcdf; #406737, thanks Reinis Danne preparing the patch;
-  Loosen dep for cuda support, #406083
-
-  24 Sep 2012; Mike Frysinger <vapier@gentoo.org> vmd-1.9.1.ebuild:
-  QA_DT_HASH (old/deprecated) -> QA_FLAGS_IGNORED (new hotness).
-
-  05 Sep 2012; Justin Lecher <jlec@gentoo.org> -vmd-1.8.7-r2.ebuild,
-  -vmd-1.9.ebuild, vmd-1.9.1.ebuild:
-  Bumped to EAPI=4; use domenu; drop old
-
-  14 Feb 2012; Alexey Shvetsov <alexxy@gentoo.org> vmd-1.9.1.ebuild:
-  Fix plugin install
-
-*vmd-1.9.1 (14 Feb 2012)
-
-  14 Feb 2012; Alexey Shvetsov <alexxy@gentoo.org> +vmd-1.9.1.ebuild:
-  Version bump =D
-
-  10 Jan 2012; Justin Lecher <jlec@gentoo.org> vmd-1.9.ebuild:
-  Remove USE=static-libs because this breaks build, #365051
-
-  10 Jan 2012; Justin Lecher <jlec@gentoo.org> vmd-1.9.ebuild, metadata.xml:
-  Enhance nofetch msg, fix compilation with USE=cuda and gcc != 4.4*, thanks
-  xarthisius for the help
-
-  20 Jul 2011; Pacho Ramos <pacho@gentoo.org> metadata.xml:
-  Drop maintainer due retirement, bug #105599
-
-  15 Jun 2011; Justin Lecher <jlec@gentoo.org> vmd-1.8.7-r2.ebuild,
-  vmd-1.9.ebuild:
-  FILESDIR is gone, wverything is mirrored now.
-
-  13 Jun 2011; Justin Lecher <jlec@gentoo.org> vmd-1.8.7-r2.ebuild,
-  vmd-1.9.ebuild:
-  Mirrored files aren't fetchrestricted
-
-  13 Jun 2011; Justin Lecher <jlec@gentoo.org> vmd-1.8.7-r2.ebuild,
-  -files/vmd-1.8.7-gentoo.patch, -files/vmd-1.8.7-respect-flags.patch,
-  vmd-1.9.ebuild, -files/vmd-1.9-gentoo-base.patch,
-  -files/vmd-1.9-gentoo-plugins.patch, -files/vmd.desktop, -files/vmd.png:
-  No binaryfiles in VCS please, #370915
-
-  27 Mar 2011; Justin Lecher <jlec@gentoo.org> vmd-1.9.ebuild:
-  Correct version of cuda dep, #360401
-
-*vmd-1.9 (22 Mar 2011)
-
-  22 Mar 2011; Justin Lecher <jlec@gentoo.org> vmd-1.8.7-r2.ebuild,
-  +vmd-1.9.ebuild, +files/vmd-1.9-gentoo-base.patch,
-  +files/vmd-1.9-gentoo-plugins.patch, metadata.xml:
-  Version Bump, #358981; Dropped ppc due to missing KEYWORDS in DEPs
-
-  22 Mar 2011; Justin Lecher <jlec@gentoo.org> vmd-1.8.7-r2.ebuild:
-  Restrict fltk version being able to return includedir
-
-  20 Mar 2011; Justin Lecher <jlec@gentoo.org> -vmd-1.8.7-r1.ebuild,
-  vmd-1.8.7-r2.ebuild:
-  x11-libs/fltk SLOTMOVE 1.1 -> 1, corrected ebuild accordingly
-
-  11 Dec 2010; Justin Lecher <jlec@gentoo.org> vmd-1.8.7-r2.ebuild:
-  QA on quoting
-
-  30 Oct 2010; Justin Lecher <jlec@gentoo.org> vmd-1.8.7-r2.ebuild:
-  Corrected msms DEP to sci-chemistry/msms-bin
-
-  21 Aug 2010; Alexey Shvetsov <alexxy@gentoo.org> vmd-1.8.7-r2.ebuild,
-  metadata.xml:
-  Add msms and povray to RDEPS as per bug #293504
-
-*vmd-1.8.7-r2 (27 Jul 2010)
-
-  27 Jul 2010; Justin Lecher <jlec@gentoo.org>
-  -files/vmd-1.8.5-config-gentoo.patch,
-  -files/vmd-1.8.6-config-gentoo.patch,
-  -files/vmd-1.8.6-fix-crash-on-tcl8.5.patch,
-  -files/vmd-1.8.6-python-2.5.patch, -files/vmd-1.8.6-tcltk8.5.patch,
-  vmd-1.8.7-r1.ebuild, +vmd-1.8.7-r2.ebuild, -files/vmd-1.8.7-config.patch,
-  files/vmd-1.8.7-gentoo.patch, +files/vmd-1.8.7-respect-flags.patch,
-  -files/vmd-1.8.7-use-bash-startup.patch:
-  Make it really prefix ready, don't mix CFLAGS/CXXFLAGS,clean old patches
-
-  24 Jul 2010; Justin Lecher <jlec@gentoo.org> vmd-1.8.7-r1.ebuild:
-  Added prefix changes, thanks rei4dan #327517; keyworded for ~-linux prefix
-
-  28 May 2010; Justin Lecher <jlec@gentoo.org> -vmd-1.8.6.ebuild,
-  -vmd-1.8.6-r1.ebuild, -vmd-1.8.7.ebuild:
-  Removed all non PythonABI compatible ebuilds
-
-*vmd-1.8.7-r1 (18 May 2010)
-
-  18 May 2010; Justin Lecher <jlec@gentoo.org> +vmd-1.8.7-r1.ebuild,
-  files/vmd-1.8.7-config.patch, +files/vmd-1.8.7-gentoo.patch:
-  Fix for new python ABIs, #316187; building netcdf plugin, #306893, thanks
-  Kamil Kisiel for the patch; LDFLAGS are respected now; EAPI=3 and basic
-  fixes for prefix, usability has to be tested
-
-  23 Feb 2010; Alexey Shvetsov <alexxy@gentoo.org> vmd-1.8.6-r1.ebuild,
-  vmd-1.8.7.ebuild, metadata.xml:
-  add tachyon raytracer as rdep
-
-  18 Sep 2009; Petteri Räty <betelgeuse@gentoo.org> vmd-1.8.7.ebuild:
-  Remove built_with_use and use proper DEPEND atoms that work properly for
-  both tk 8.4 and 8.5 users.
-
-  11 Aug 2009; Markus Dittrich <markusle@gentoo.org> vmd-1.8.7.ebuild,
-  +files/vmd.desktop, +files/vmd.png:
-  Added desktop entry and vmd icon (#262275).
-  Thanks much to Bjoern Olausson for creating them.
-
-  07 Aug 2009; Markus Dittrich <markusle@gentoo.org> vmd-1.8.7.ebuild,
-  files/vmd-1.8.7-config.patch:
-  Remove the EAPI2 check for -truetype and add explicit error logic
-  so tk-8.4 users can emerge vmd as well. Also updated the config
-  patch to handle tk8.4 better.
-
-*vmd-1.8.7 (05 Aug 2009)
-
-  05 Aug 2009; Markus Dittrich <markusle@gentoo.org> +vmd-1.8.7.ebuild,
-  +files/vmd-1.8.7-config.patch, +files/vmd-1.8.7-use-bash-startup.patch:
-  Version bump (fixes bug #262275).
-
-  07 Jul 2009; Diego E. Pettenò <flameeyes@gentoo.org> vmd-1.8.6-r1.ebuild:
-  Use elog for fetch error.
-
-  18 May 2009; Jeff Gardner <je_fro@gentoo.org>
-  +files/vmd-1.8.6-fix-crash-on-tcl8.5.patch:
-  adding alexxy's patch :)
-
-  17 May 2009; Jeff Gardner <je_fro@gentoo.org> +vmd-1.8.6-r1.ebuild:
-  Fixed by alexxy to work with tcl8.5
-
-*vmd-1.8.6-r1 (17 May 2009)
-
-  17 May 2009; Jeff Gardner <je_fro@gentoo.org> +vmd-1.8.6-r1.ebuild:
-  Fixed by alexxy to work with tcl5.8
-
-  12 Nov 2008; Markus Dittrich <markusle@gentoo.org> -vmd-1.8.5.ebuild,
-  vmd-1.8.6.ebuild:
-  Restrict fltk to 1.1 slot since vmd is not fltk-2 ready 
-  (see bug #246445). Removed old ebuild.
-
-  13 Mar 2008; Markus Dittrich <markusle@gentoo.org>
-  +files/vmd-1.8.6-tcltk8.5.patch, vmd-1.8.6.ebuild:
-  Added tcltk-8.5 support (fixes bug #212936).
-
-  20 Sep 2007; Markus Dittrich <markusle@gentoo.org>
-  +files/vmd-1.8.6-python-2.5.patch, vmd-1.8.6.ebuild:
-  Added patch to fix python-2.5 compile issues on amd64 (fixes bug
-  #192902). Thanks much to milan hodoscek <milan@cmm.ki.si> for his
-  patch.
-
-  22 Jul 2007; Donnie Berkholz <dberkholz@gentoo.org>; vmd-1.8.5.ebuild,
-  vmd-1.8.6.ebuild:
-  Drop virtual/x11 references.
-
-*vmd-1.8.6 (15 Apr 2007)
-
-  15 Apr 2007; Markus Dittrich <markusle@gentoo.org>
-  -files/vmd-1.8.4-config-gentoo.patch, -files/vmd-1.8.4-paratool.patch,
-  -files/vmd-1.8.4-plugin-autopsf.patch,
-  +files/vmd-1.8.6-config-gentoo.patch, +vmd-1.8.6.ebuild:
-  Version bump (fixes bug #174595). Thanks much to Jeffrey Gardner
-  <je_fro@gentoo.org> for his patch and ebuild.
-
-  08 Jan 2007; Danny van Dyk <kugelfang@gentoo.org> -vmd-1.8.4.ebuild,
-  -vmd-1.8.4-r1.ebuild:
-  QA: Removed unused versions.
-
-  07 Jan 2007; Markus Dittrich <markusle@gentoo.org> vmd-1.8.5.ebuild:
-  Replaced backslashes with colons in some sed statements 
-  (see bug #145467).
-
-  03 Jan 2007; Jeff Gardner <je_fro@gentoo.org> vmd-1.8.5.ebuild:
-  added ~amd64
-
-  27 Dec 2006; Markus Dittrich <markusle@gentoo.org> vmd-1.8.5.ebuild:
-  Remove netcdf use flag and enable netcdf support by default
-  since it is needed by the catdcd plugin. This fixes bug #159081.
-
-  22 Dec 2006; Markus Dittrich <markusle@gentoo.org>
-  files/vmd-1.8.5-config-gentoo.patch, vmd-1.8.5.ebuild:
-  Added netcdf support. This fixes bug #158771.
-
-  09 Nov 2006; Markus Dittrich <markusle@gentoo.org> vmd-1.8.5.ebuild:
-  Enabled IMD functionality. Thanks to Stephane Gagne 
-  <sgagne@rsvs.ulaval.ca> for pointing this out (see bug #154429).
-
-  20 Sep 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
-  (#148281) Change herd to sci-chemistry from sci.
-
-*vmd-1.8.5 (26 Aug 2006)
-
-  26 Aug 2006; Markus Dittrich <markusle@gentoo.org>
-  -files/vmd-1.8.3-config-gentoo.patch,
-  +files/vmd-1.8.5-config-gentoo.patch, -vmd-1.8.3.ebuild,
-  +vmd-1.8.5.ebuild:
-  Version bump. Also removed some of the old ebuilds.
-
-*vmd-1.8.4-r1 (13 Aug 2006)
-
-  13 Aug 2006; Markus Dittrich <markusle@gentoo.org>
-  +files/vmd-1.8.4-paratool.patch, +vmd-1.8.4-r1.ebuild:
-  VMD now depends on stride in order to properly display secondary
-  structure information. Also patched a paratool plugin error under
-  tcl-8.4.13.
-
-  29 Apr 2006; Marien Zwart <marienz@gentoo.org> Manifest:
-  Fix SHA256 digests.
-
-*vmd-1.8.4 (18 Apr 2006)
-
-  18 Apr 2006; Markus Dittrich <markusle@gentoo.org>
-  +files/vmd-1.8.4-config-gentoo.patch,
-  +files/vmd-1.8.4-plugin-autopsf.patch, +vmd-1.8.4.ebuild:
-  Version bump.
-
-  21 Mar 2006; Donnie Berkholz <spyderous@gentoo.org>; vmd-1.8.3.ebuild:
-  Keyword ~ppc, and make changes to the wrapper script that may also fix amd64
-  and alpha.
-
-  14 Feb 2006; Markus Dittrich <markusle@gentoo.org> Manifest:
-  Fixed bogus .Chanlog.swp file entry in Manifest.
-
-*vmd-1.8.3 (10 Feb 2006)
-
-  10 Feb 2006; Markus Dittrich <markusle@gentoo.org>
-  +files/vmd-1.8.3-config-gentoo.patch, +metadata.xml, +vmd-1.8.3.ebuild:
-  Initial import.

diff --git a/sci-chemistry/vmd/metadata.xml b/sci-chemistry/vmd/metadata.xml
deleted file mode 100644
index be76141..0000000
--- a/sci-chemistry/vmd/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer>
-		<email>alexxy@gentoo.org</email>
-		<name>Alexey Shvetsov</name>
-	</maintainer>
-	<herd>sci-chemistry</herd>
-	<use>
-		<flag name="msms">Add support for MSMS SAS calcualtion tool</flag>
-		<flag name="povray">Add support for povray raytracer for HQ	images</flag>
-		<flag name="tachyon">Add support for tachyon raytracer for HQ images</flag>
-		<flag name="cuda">Use nvidia cuda toolkit for speeding up computations</flag>
-	</use>
-</pkgmetadata>

diff --git a/sci-chemistry/vmd/vmd-1.9.1-r1.ebuild b/sci-chemistry/vmd/vmd-1.9.1-r1.ebuild
deleted file mode 100644
index 259c60c..0000000
--- a/sci-chemistry/vmd/vmd-1.9.1-r1.ebuild
+++ /dev/null
@@ -1,226 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/vmd-1.9.1-r1.ebuild,v 1.1 2012/11/14 15:18:58 jlec Exp $
-
-EAPI=5
-
-PYTHON_DEPEND="2"
-
-inherit cuda eutils multilib prefix python toolchain-funcs
-
-DESCRIPTION="Visual Molecular Dynamics"
-HOMEPAGE="http://www.ks.uiuc.edu/Research/vmd/"
-SRC_URI="
-	http://dev.gentoo.org/~jlec/distifles/${P}-gentoo-patches-2.tar.xz
-	${P}.src.tar.gz"
-
-SLOT="0"
-LICENSE="vmd"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="cuda msms povray tachyon xinerama"
-
-RESTRICT="fetch"
-
-# currently, tk-8.5* with USE=truetype breaks some
-# tk apps such as Sequence Viewer or Timeline.
-CDEPEND="
-	>=dev-lang/tk-8.5[-truetype]
-	dev-lang/perl
-	dev-python/numpy
-	sci-libs/netcdf
-	virtual/opengl
-	>=x11-libs/fltk-1.1.10-r2:1
-	x11-libs/libXft
-	x11-libs/libXi
-	cuda? (
-		>=dev-util/nvidia-cuda-toolkit-3.1
-		|| (
-			sys-devel/gcc:4.4
-			sys-devel/gcc:4.5 )
-		)
-	xinerama? ( x11-libs/libXinerama )"
-DEPEND="${CDEPEND}
-	dev-lang/swig"
-RDEPEND="${CDEPEND}
-	sci-biology/stride
-	sci-chemistry/surf
-	x11-terms/xterm
-	msms? ( sci-chemistry/msms-bin )
-	povray? ( media-gfx/povray )
-	tachyon? ( media-gfx/tachyon )"
-
-VMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD"
-# Binary only plugin!!
-QA_PREBUILT="usr/lib*/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so"
-QA_FLAGS_IGNORED_amd64=" usr/lib64/vmd/plugins/LINUX/tcl/volutil1.3/volutil"
-QA_FLAGS_IGNORED_x86=" usr/lib/vmd/plugins/LINUX/tcl/volutil1.3/volutil"
-
-pkg_nofetch() {
-	elog "Please download ${P}.src.tar.gz from"
-	elog "${VMD_DOWNLOAD}"
-	elog "after agreeing to the license and get"
-	elog "http://dev.gentoo.org/~jlec/distfiles/${P}-gentoo-patches-2.tar.xz"
-	elog "Place both in ${DISTDIR}"
-}
-
-pkg_setup() {
-	python_set_active_version 2
-	python_pkg_setup
-}
-
-src_prepare() {
-	use cuda && cuda_sanitize
-
-	cd "${WORKDIR}"/plugins
-
-	epatch "${WORKDIR}"/${P}-gentoo-plugins.patch
-
-	[[ ${SILENT} == yes ]] || sed '/^.SILENT/d' -i $(find -name Makefile)
-
-	sed \
-		-e "s:CC = gcc:CC = $(tc-getCC):" \
-		-e "s:CXX = g++:CXX = $(tc-getCXX):" \
-		-e "s:COPTO =.*\":COPTO = -fPIC -o\":" \
-		-e "s:LOPTO = .*\":LOPTO = ${LDFLAGS} -fPIC -o\":" \
-		-e "s:CCFLAGS =.*\":CCFLAGS = ${CFLAGS}\":" \
-		-e "s:CXXFLAGS =.*\":CXXFLAGS = ${CXXFLAGS}\":" \
-		-e "s:SHLD = gcc:SHLD = $(tc-getCC) -shared:" \
-		-e "s:SHXXLD = g++:SHXXLD = $(tc-getCXX) -shared:" \
-		-e "s:-ltcl8.5:-ltcl:" \
-		-i Make-arch || die "Failed to set up plugins Makefile"
-
-	sed \
-		-e '/^AR /s:=:?=:g' \
-		-e '/^RANLIB /s:=:?=:g' \
-		-i ../plugins/*/Makefile || die
-
-	tc-export AR RANLIB
-
-	sed \
-		-e "s:\$(CXXFLAGS)::g" \
-		-i hesstrans/Makefile || die
-
-	# prepare vmd itself
-	cd "${S}"
-
-	epatch "${WORKDIR}"/${P}-gentoo-base.patch
-
-	# PREFIX
-	sed \
-		-e "s:/usr/include/:${EPREFIX}/usr/include:g" \
-		-i configure || die
-
-	sed \
-		-e "s:gentoo-bindir:${ED}/usr/bin:g" \
-		-e "s:gentoo-libdir:${ED}/usr/$(get_libdir):g" \
-		-e "s:gentoo-opengl-include:${EPREFIX}/usr/include/GL:g" \
-		-e "s:gentoo-opengl-libs:${EPREFIX}/usr/$(get_libdir):g" \
-		-e "s:gentoo-gcc:$(tc-getCC):g" \
-		-e "s:gentoo-g++:$(tc-getCXX):g" \
-		-e "s:gentoo-nvcc:${EPREFIX}/opt/cuda/bin/nvcc:g" \
-		-e "s:gentoo-cflags:${CFLAGS}:g" \
-		-e "s:gentoo-cxxflags:${CXXFLAGS}:g" \
-		-e "s:gentoo-nvflags::g" \
-		-e "s:gentoo-ldflags:${LDFLAGS}:g" \
-		-e "s:gentoo-plugindir:${WORKDIR}/plugins:g" \
-		-e "s:gentoo-fltk-include:$(fltk-config --includedir):g" \
-		-e "s:gentoo-fltk-libs:$(dirname $(fltk-config --libs)) -Wl,-rpath,$(dirname $(fltk-config --libs)):g" \
-		-e "s:gentoo-netcdf-include:${EPREFIX}/usr/include:g" \
-		-e "s:gentoo-netcdf-libs:${EPREFIX}/usr/$(get_libdir):g" \
-		-i configure || die
-
-#	local NUMPY_INCLUDE="numpy/core/include"
-#	sed -e "s:gentoo-python-include:${EPREFIX}$(python_get_includedir):" \
-#		-e "s:gentoo-python-lib:${EPREFIX}$(python_get_libdir):" \
-#		-e "s:gentoo-python-link:$(PYTHON):" \
-#		-e "s:gentoo-numpy-include:${EPREFIX}$(python_get_sitedir)/${NUMPY_INCLUDE}:" \
-#		-i configure || die "failed setting up python"
-
-	if use cuda; then
-		sed \
-			-e "s:gentoo-cuda-lib:${EPREFIX}/opt/cuda/$(get_libdir):g" \
-			-e "/NVCCFLAGS/s:=:= ${NVCCFLAGS}:g" \
-			-i configure src/Makefile || die
-	fi
-
-	sed \
-		-e "s:LINUXPPC:LINUX:g" \
-		-e "s:LINUXALPHA:LINUX:g" \
-		-e "s:LINUXAMD64:LINUX:g" \
-		-e "s:gentoo-stride:${EPREFIX}/usr/bin/stride:g" \
-		-e "s:gentoo-surf:${EPREFIX}/usr/bin/surf:g" \
-		-e "s:gentoo-tachyon:${EPREFIX}/usr/bin/tachyon:g" \
-		-i "${S}"/bin/vmd.sh || die "failed setting up vmd wrapper script"
-}
-
-src_configure() {
-	local myconf="OPENGL FLTK TK TCL PTHREADS PYTHON IMD NETCDF NUMPY NOSILENT XINPUT"
-	rm -f configure.options && echo $myconf >> configure.options
-
-	use cuda && myconf+=" CUDA"
-#	use mpi && myconf+=" MPI"
-#	use tachion && myconf+=" LIBTACHYON"
-	use xinerama && myconf+=" XINERAMA"
-
-	export \
-		PYTHON_INCLUDE_DIR="${EPREFIX}$(python_get_includedir)" \
-		PYTHON_LIBRARY_DIR="${EPREFIX}$(python_get_libdir)" \
-		PYTHON_LIBRARY="$(python_get_library -l)" \
-		NUMPY_INCLUDE_DIR="${EPREFIX}$(python_get_sitedir)/numpy/core/include" \
-		NUMPY_LIBRARY_DIR="${EPREFIX}$(python_get_sitedir)/numpy/core/include"
-
-	./configure LINUX \
-		${myconf} || die
-}
-
-src_compile() {
-	# build plugins
-	cd "${WORKDIR}"/plugins
-
-	emake \
-		TCLINC="-I${EPREFIX}/usr/include" \
-		TCLLIB="-L${EPREFIX}/usr/$(get_libdir)" \
-		NETCDFLIB="$(pkg-config --libs-only-L netcdf) ${EPREFIX}/usr/lib64/libnetcdf.so" \
-		NETCDFINC="$(pkg-config --cflags-only-I netcdf) ${EPREFIX}/usr/include" \
-		NETCDFLDFLAGS="$(pkg-config --libs netcdf)" \
-		LINUX
-
-	# build vmd
-	cd "${S}"/src
-	emake
-}
-
-src_install() {
-	# install plugins
-	cd "${WORKDIR}"/plugins
-	emake \
-			PLUGINDIR="${ED}/usr/$(get_libdir)/${PN}/plugins" \
-			distrib
-
-	# install vmd
-	cd "${S}"/src
-	emake install
-
-	# install docs
-	cd "${S}"
-	dodoc Announcement README doc/ig.pdf doc/ug.pdf
-
-	# remove some of the things we don't want and need in
-	# /usr/lib
-	cd "${ED}"/usr/$(get_libdir)/vmd
-	rm -fr doc README Announcement LICENSE || \
-		die "failed to clean up /usr/lib/vmd directory"
-
-	# adjust path in vmd wrapper
-	sed \
-		-e "s:${ED}::" -i "${ED}"/usr/bin/${PN} \
-		-e "/^defaultvmddir/s:^.*$:defaultvmddir=\"${EPREFIX}/usr/$(get_libdir)/${PN}\":g" \
-		|| die "failed to set up vmd wrapper script"
-
-	# install icon and generate desktop entry
-	insinto /usr/share/pixmaps
-	doins "${WORKDIR}"/vmd.png
-	eprefixify "${WORKDIR}"/vmd.desktop
-	sed -i '/^Path/d' "${WORKDIR}"/vmd.desktop || die
-	domenu "${WORKDIR}"/vmd.desktop
-}