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* [gentoo-commits] proj/sci:master commit in: /
  2012-11-29 21:06 [gentoo-commits] proj/sci:pkg-config commit in: / Justin Lecher
@ 2012-11-26 22:02 ` Justin Lecher
  0 siblings, 0 replies; 14+ messages in thread
From: Justin Lecher @ 2012-11-26 22:02 UTC (permalink / raw
  To: gentoo-commits

commit:     3391795fe67e03ec6208d5f890625733b43a88cc
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Nov 26 14:43:20 2012 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Nov 26 14:43:20 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3391795f

# By Justin Lecher (20) and Olivier Huber (1)
* cuda: (21 commits)
  dev-util/nvidia-cuda-sdk: Version Bump, inclusive cuda.eclass usage
  sci-chemistry/vmd: Using new cuda.eclass
  Imported from tree
  Preparing Version Bump
  dev-util/nvidia-cuda-toolkit: Merge change in both versions; fix whitespace error
  Correcting whitespace problem
  Minor fixes
  Be a little more informative.
  do not call pkg_setup from cuda.eclass
  Move pkg_postinst to dev-util/nvidia-cuda-toolkit
  Adding ignores for Mac
  Add comments and streamline
  dev-util/nvidia-cuda-sdk: Preparing Version Bump
  Add pkg_setup and gcc bindir detection
  dev-util/nvidia-cuda-toolkit: Enhancing cuda-config
  dev-util/nvidia-cuda-sdk: Reverted changes to bicatalis commit; Moving to cuda.eclass
  dev-util/nvidia-cuda-toolkit: Version Bump
  preliminary cuda.eclass
  Work in progress towards cuda eclass usage
  dev-util/nvidia-cuda-toolkit: Use cuda.eclass; install cuda-config; install doc and html into system path to support portages file filter
  ...



^ permalink raw reply	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:pkg-config commit in: /
@ 2012-11-29 21:05 Justin Lecher
  0 siblings, 0 replies; 14+ messages in thread
From: Justin Lecher @ 2012-11-29 21:05 UTC (permalink / raw
  To: gentoo-commits

commit:     025bf2727babc62c8535119690e47e3da9a649f3
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Nov 25 16:16:54 2012 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Nov 25 16:16:54 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=025bf272

Merge branch 'cuda' of github.com:gentoo-science/sci into cuda

# By Justin Lecher (7) and others
# Via Justin Lecher (2) and others
* 'cuda' of github.com:gentoo-science/sci:
  Be a little more informative.
  do not call pkg_setup from cuda.eclass
  Move pkg_postinst to dev-util/nvidia-cuda-toolkit
  Adding ignores for Mac
  Add comments and streamline
  sci-physics/LoopTools: Manifest fixed
  live ebuild update
  updated build and deps
  dev-java/netcdf: Add the netCDF licence (which is *not* MIT)
  sci-chemistry/avogadro: Add test phase
  sci-chemistry/simpson: Fix underlinking
  Added live ebuild for MDP

Conflicts:
	eclass/cuda.eclass

Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>


 .gitignore                                         |    1 +
 app-doc/gromacs-manual/ChangeLog                   |    4 ++
 .../gromacs-manual/gromacs-manual-4.6.9999.ebuild  |    7 ++-
 dev-java/netcdf/ChangeLog                          |    5 ++
 dev-java/netcdf/netcdf-4.2.ebuild                  |    2 +-
 .../nvidia-cuda-toolkit-5.0.35.ebuild              |   30 +++++++++--
 eclass/cuda.eclass                                 |   53 +++++++++++++-------
 licenses/netCDF                                    |   31 +++++++++++
 sci-chemistry/avogadro/ChangeLog                   |    3 +
 sci-chemistry/avogadro/avogadro-9999.ebuild        |    8 ++-
 sci-chemistry/gromacs/ChangeLog                    |    3 +
 sci-chemistry/gromacs/gromacs-4.6.9999.ebuild      |   34 +++++-------
 sci-chemistry/simpson/ChangeLog                    |    3 +
 sci-chemistry/simpson/files/3.1.0-gentoo.patch     |    2 +-
 sci-mathematics/mdp/Manifest                       |    2 +-
 sci-mathematics/mdp/mdp-9999.ebuild                |   31 +++++++++++
 sci-physics/LoopTools/Manifest                     |    2 +-
 17 files changed, 167 insertions(+), 54 deletions(-)

diff --cc eclass/cuda.eclass
index e722fa0,3bb779a..fc6fe51
--- a/eclass/cuda.eclass
+++ b/eclass/cuda.eclass
@@@ -72,10 -90,10 +88,10 @@@ cuda_gccdir() 
  		echo ${_ret}
  		return 0
  	else
-       eerror "Only gcc version(s) ${_args} are supported,"
 -        eerror "Only gcc version(s) ${_args} are supported,"
++		eerror "Only gcc version(s) ${_args} are supported,"
  		eerror "of which none is installed"
-       die "Only gcc version(s) ${_args} are supported"
-       return 1
 -        die "Only gcc version(s) ${_args} are supported"
 -        return 1
++		die "Only gcc version(s) ${_args} are supported"
++		return 1
     fi
  }
  


^ permalink raw reply	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:pkg-config commit in: /
@ 2012-11-29 21:05 Justin Lecher
  0 siblings, 0 replies; 14+ messages in thread
From: Justin Lecher @ 2012-11-29 21:05 UTC (permalink / raw
  To: gentoo-commits

commit:     2fd20bdc3c05d893f9da8209ba11daebd6e383fc
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Nov 25 09:53:01 2012 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Nov 25 09:53:01 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2fd20bdc

Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci

* 'master' of git+ssh://git.overlays.gentoo.org/proj/sci:

* github.com:gentoo-science/sci:
  Ignore .DS_Store
  sci-physics/LoopTools: Manifest fixed
  dev-java/netcdf: Add the netCDF licence (which is *not* MIT)
  Added live ebuild for MDP


 .gitignore                          |    2 ++
 dev-java/netcdf/ChangeLog           |    5 +++++
 dev-java/netcdf/netcdf-4.2.ebuild   |    2 +-
 licenses/netCDF                     |   31 +++++++++++++++++++++++++++++++
 sci-mathematics/mdp/Manifest        |    2 +-
 sci-mathematics/mdp/mdp-9999.ebuild |   31 +++++++++++++++++++++++++++++++
 sci-physics/LoopTools/Manifest      |    2 +-
 7 files changed, 72 insertions(+), 3 deletions(-)


^ permalink raw reply	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:pkg-config commit in: /
@ 2012-11-29 21:05 Justin Lecher
  0 siblings, 0 replies; 14+ messages in thread
From: Justin Lecher @ 2012-11-29 21:05 UTC (permalink / raw
  To: gentoo-commits

commit:     0a105fad9d92a968c581632d9b963b78772e7791
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Nov 25 08:54:24 2012 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Nov 25 08:54:24 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0a105fad

Merge branch 'master' into cuda

# By Christoph Junghans (2) and others
# Via Sébastien Fabbro (2) and others
* master:
  sci-physics/LoopTools: Manifest fixed
  live ebuild update
  updated build and deps
  dev-java/netcdf: Add the netCDF licence (which is *not* MIT)
  sci-chemistry/avogadro: Add test phase
  sci-chemistry/simpson: Fix underlinking
  Added live ebuild for MDP


 app-doc/gromacs-manual/ChangeLog                   |    4 ++
 .../gromacs-manual/gromacs-manual-4.6.9999.ebuild  |    7 ++--
 dev-java/netcdf/ChangeLog                          |    5 +++
 dev-java/netcdf/netcdf-4.2.ebuild                  |    2 +-
 licenses/netCDF                                    |   31 ++++++++++++++++++
 sci-chemistry/avogadro/ChangeLog                   |    3 ++
 sci-chemistry/avogadro/avogadro-9999.ebuild        |    8 +++-
 sci-chemistry/gromacs/ChangeLog                    |    3 ++
 sci-chemistry/gromacs/gromacs-4.6.9999.ebuild      |   34 ++++++++-----------
 sci-chemistry/simpson/ChangeLog                    |    3 ++
 sci-chemistry/simpson/files/3.1.0-gentoo.patch     |    2 +-
 sci-mathematics/mdp/Manifest                       |    2 +-
 sci-mathematics/mdp/mdp-9999.ebuild                |   31 ++++++++++++++++++
 sci-physics/LoopTools/Manifest                     |    2 +-
 14 files changed, 108 insertions(+), 29 deletions(-)


^ permalink raw reply	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:pkg-config commit in: /
@ 2012-11-29 21:05 Justin Lecher
  0 siblings, 0 replies; 14+ messages in thread
From: Justin Lecher @ 2012-11-29 21:05 UTC (permalink / raw
  To: gentoo-commits

commit:     348d18efa7374599396a84a8100b12d1b5b7bc4b
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Nov 25 16:44:26 2012 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Nov 25 16:44:26 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=348d18ef

Merge branch 'master' into cuda

* master:
  Ignore .DS_Store
  fixing manifest
  removed g-cran, broken
  Re-manifesting
  dev-cpp/eigen: Version bump

Conflicts:
	.gitignore


 .gitignore                                         |    2 +-
 app-portage/g-cran/ChangeLog                       |   20 -----
 app-portage/g-cran/g-cran-9999.ebuild              |   25 ------
 app-portage/g-cran/metadata.xml                    |   10 ---
 dev-cpp/eigen/ChangeLog                            |    6 ++
 dev-cpp/eigen/Manifest                             |    2 +-
 dev-cpp/eigen/eigen-3.0.6-r1.ebuild                |   84 --------------------
 .../{eigen-3.1.1-r1.ebuild => eigen-3.1.2.ebuild}  |    0
 dev-cpp/eigen/metadata.xml                         |   14 ++--
 dev-java/flexdock/Manifest                         |    2 +-
 sci-astronomy/scamp/Manifest                       |    2 +-
 sci-astronomy/sextractor/Manifest                  |    2 +-
 sci-astronomy/skymaker/Manifest                    |    2 +-
 sci-astronomy/stuff/Manifest                       |    2 +-
 14 files changed, 20 insertions(+), 153 deletions(-)

diff --cc .gitignore
index 496ee2c,9bea433..e43b0f9
--- a/.gitignore
+++ b/.gitignore
@@@ -1,1 -1,2 +1,1 @@@
- .DS_Store
 -
+ .DS_Store


^ permalink raw reply	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:pkg-config commit in: /
@ 2012-11-29 21:05 Justin Lecher
  0 siblings, 0 replies; 14+ messages in thread
From: Justin Lecher @ 2012-11-29 21:05 UTC (permalink / raw
  To: gentoo-commits

commit:     16a095ad939a22dd5317c470ce170ae0fc87d896
Author:     Sébastien Fabbro <sebfabbro <AT> gmail <DOT> com>
AuthorDate: Sun Nov 25 18:11:34 2012 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Nov 25 18:11:34 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=16a095ad

Merge pull request #31 from xhub/master

fix misc issues with sci-libs/magma


 sci-libs/magma/ChangeLog          |    5 +++++
 sci-libs/magma/magma-1.2.1.ebuild |   29 +++++++++++++++++++++++------
 sci-libs/magma/metadata.xml       |    1 -
 3 files changed, 28 insertions(+), 7 deletions(-)


^ permalink raw reply	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:pkg-config commit in: /
@ 2012-11-29 21:06 Justin Lecher
  0 siblings, 0 replies; 14+ messages in thread
From: Justin Lecher @ 2012-11-29 21:06 UTC (permalink / raw
  To: gentoo-commits

commit:     1e6b805919ca7647b7c4aa7265a093e62d542eb1
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Nov 26 14:36:04 2012 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Nov 26 14:36:04 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1e6b8059

* cuda:
  dev-util/nvidia-cuda-sdk: Version Bump, inclusive cuda.eclass usage
  sci-chemistry/vmd: Using new cuda.eclass
  Imported from tree
  Preparing Version Bump
  dev-util/nvidia-cuda-toolkit: Merge change in both versions; fix whitespace error
  Correcting whitespace problem
  Minor fixes
  Be a little more informative.
  do not call pkg_setup from cuda.eclass
  Move pkg_postinst to dev-util/nvidia-cuda-toolkit
  Adding ignores for Mac
  Add comments and streamline
  dev-util/nvidia-cuda-sdk: Preparing Version Bump
  Add pkg_setup and gcc bindir detection
  dev-util/nvidia-cuda-toolkit: Enhancing cuda-config
  dev-util/nvidia-cuda-sdk: Reverted changes to bicatalis commit; Moving to cuda.eclass
  dev-util/nvidia-cuda-toolkit: Version Bump
  preliminary cuda.eclass
  Work in progress towards cuda eclass usage
  dev-util/nvidia-cuda-toolkit: Use cuda.eclass; install cuda-config; install doc and html into system path to support portages file filter


 .gitignore                                         |    1 -
 dev-util/nvidia-cuda-sdk/ChangeLog                 |   15 +
 dev-util/nvidia-cuda-sdk/Manifest                  |    2 +
 .../files/nvidia-cuda-sdk-5.0.35-asneeded.patch    | 4159 ++++++++++++++++++++
 dev-util/nvidia-cuda-sdk/metadata.xml              |   13 +-
 .../nvidia-cuda-sdk-4.2.9-r1.ebuild                |  112 +
 .../nvidia-cuda-sdk/nvidia-cuda-sdk-4.2.9.ebuild   |   69 -
 .../nvidia-cuda-sdk/nvidia-cuda-sdk-5.0.35.ebuild  |  119 +
 dev-util/nvidia-cuda-toolkit/ChangeLog             |   20 +
 dev-util/nvidia-cuda-toolkit/Manifest              |    6 +-
 dev-util/nvidia-cuda-toolkit/files/cuda-config.in  |   28 +
 dev-util/nvidia-cuda-toolkit/metadata.xml          |   13 +-
 .../nvidia-cuda-toolkit-4.2.9-r1.ebuild            |  106 +
 .../nvidia-cuda-toolkit-4.2.9.ebuild               |   73 -
 .../nvidia-cuda-toolkit-5.0.35.ebuild              |  111 +
 eclass/cuda.eclass                                 |  123 +
 sci-chemistry/vmd/ChangeLog                        |  238 ++
 sci-chemistry/vmd/Manifest                         |    2 +
 sci-chemistry/vmd/metadata.xml                     |   15 +
 sci-chemistry/vmd/vmd-1.9.1-r1.ebuild              |  223 ++
 20 files changed, 5290 insertions(+), 158 deletions(-)


^ permalink raw reply	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:pkg-config commit in: /
@ 2012-11-29 21:06 Justin Lecher
  2012-11-26 22:02 ` [gentoo-commits] proj/sci:master " Justin Lecher
  0 siblings, 1 reply; 14+ messages in thread
From: Justin Lecher @ 2012-11-29 21:06 UTC (permalink / raw
  To: gentoo-commits

commit:     3391795fe67e03ec6208d5f890625733b43a88cc
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Nov 26 14:43:20 2012 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Nov 26 14:43:20 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3391795f

# By Justin Lecher (20) and Olivier Huber (1)
* cuda: (21 commits)
  dev-util/nvidia-cuda-sdk: Version Bump, inclusive cuda.eclass usage
  sci-chemistry/vmd: Using new cuda.eclass
  Imported from tree
  Preparing Version Bump
  dev-util/nvidia-cuda-toolkit: Merge change in both versions; fix whitespace error
  Correcting whitespace problem
  Minor fixes
  Be a little more informative.
  do not call pkg_setup from cuda.eclass
  Move pkg_postinst to dev-util/nvidia-cuda-toolkit
  Adding ignores for Mac
  Add comments and streamline
  dev-util/nvidia-cuda-sdk: Preparing Version Bump
  Add pkg_setup and gcc bindir detection
  dev-util/nvidia-cuda-toolkit: Enhancing cuda-config
  dev-util/nvidia-cuda-sdk: Reverted changes to bicatalis commit; Moving to cuda.eclass
  dev-util/nvidia-cuda-toolkit: Version Bump
  preliminary cuda.eclass
  Work in progress towards cuda eclass usage
  dev-util/nvidia-cuda-toolkit: Use cuda.eclass; install cuda-config; install doc and html into system path to support portages file filter
  ...



^ permalink raw reply	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:pkg-config commit in: /
@ 2012-11-29 21:06 Justin Lecher
  0 siblings, 0 replies; 14+ messages in thread
From: Justin Lecher @ 2012-11-29 21:06 UTC (permalink / raw
  To: gentoo-commits

commit:     6439ca34b83b490653593a8fd9e1a863041032ea
Author:     Justin <jlec <AT> j-schmitz <DOT> net>
AuthorDate: Tue Nov 27 19:00:44 2012 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Nov 27 19:00:44 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=6439ca34

Merge pull request #33 from xhub/master

dev-python/pytools: fix test related stuff and license


 dev-python/pytools/ChangeLog             |    4 +++-
 dev-python/pytools/pytools-2011.5.ebuild |    7 +++----
 2 files changed, 6 insertions(+), 5 deletions(-)


^ permalink raw reply	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:pkg-config commit in: /
  2012-11-26 22:02 [gentoo-commits] proj/sci:master " Justin Lecher
@ 2012-11-29 21:06 ` Justin Lecher
  0 siblings, 0 replies; 14+ messages in thread
From: Justin Lecher @ 2012-11-29 21:06 UTC (permalink / raw
  To: gentoo-commits

commit:     1eceb5b2c96bbd5211d4307a0eda3559e77f5424
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Nov 26 14:41:31 2012 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Nov 26 14:41:31 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1eceb5b2

Merge github.com:gentoo-science/sci

* github.com:gentoo-science/sci:
  Misc fixes for sci-libs/magma



^ permalink raw reply	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:pkg-config commit in: /
@ 2012-11-29 21:06 Justin Lecher
  0 siblings, 0 replies; 14+ messages in thread
From: Justin Lecher @ 2012-11-29 21:06 UTC (permalink / raw
  To: gentoo-commits

commit:     db23c6a18b8f6d824e09af3c0e3c5ea9bd943627
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Nov 27 19:33:11 2012 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Nov 27 19:33:11 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=db23c6a1

* intel:
  Drop USE=doc and add static-libs support
  Speed up unpacking #431614
  Drop additional blank lines.
  Drop old testing functions
  Resort general functions and variables at the beginning
  Add descriptions to standard phase functions.
  declare local variables at once
  Use clear += insteat of repeating variables
  Drop version restriction of rpm2targz
  Drop Sebastien as maintainer
  Enhancement of intel-sdp.eclass
  dev-lang/icc: Version Bump
  dev-lang/ifc: Version Bump
  imported from tree
  dev-libs/intel-common: Version Bump; drop creation of license dir
  Imported from tree
  import from tree


 .DS_Store                                          |  Bin 0 -> 15364 bytes
 dev-lang/icc/ChangeLog                             |  461 ++++++++++++++++++++
 dev-lang/icc/Manifest                              |    3 +
 dev-lang/icc/icc-13.0.1.117.ebuild                 |   36 ++
 dev-lang/icc/metadata.xml                          |   20 +
 dev-lang/ifc/ChangeLog                             |  233 ++++++++++
 dev-lang/ifc/Manifest                              |    3 +
 dev-lang/ifc/ifc-13.0.1.117.ebuild                 |   37 ++
 dev-lang/ifc/metadata.xml                          |   14 +
 dev-libs/intel-common/ChangeLog                    |   28 ++
 dev-libs/intel-common/Manifest                     |    3 +
 .../intel-common/intel-common-13.0.1.117.ebuild    |   58 +++
 dev-libs/intel-common/metadata.xml                 |   12 +
 dev-util/.DS_Store                                 |  Bin 0 -> 6148 bytes
 eclass/.DS_Store                                   |  Bin 0 -> 6148 bytes
 eclass/intel-sdp.eclass                            |  411 +++++++++++++++++
 16 files changed, 1319 insertions(+), 0 deletions(-)


^ permalink raw reply	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:pkg-config commit in: /
@ 2012-11-29 21:06 Justin Lecher
  0 siblings, 0 replies; 14+ messages in thread
From: Justin Lecher @ 2012-11-29 21:06 UTC (permalink / raw
  To: gentoo-commits

commit:     aeb46cb8ef8c5597091154995ec9d3983213cb42
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Nov 27 19:34:02 2012 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Nov 27 19:34:02 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=aeb46cb8

Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci

* 'master' of git+ssh://git.overlays.gentoo.org/proj/sci:

* github.com:gentoo-science/sci:
  dev-python/pytools: fix test related stuff and license



^ permalink raw reply	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:pkg-config commit in: /
  2012-11-29  7:03 [gentoo-commits] proj/sci:master " Justin Lecher
@ 2012-11-29 21:06 ` Justin Lecher
  0 siblings, 0 replies; 14+ messages in thread
From: Justin Lecher @ 2012-11-29 21:06 UTC (permalink / raw
  To: gentoo-commits

commit:     e38ffa027030e3fd1976cd27d6f01cdd9bcdaa44
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Nov 29 07:02:05 2012 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Nov 29 07:02:05 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e38ffa02

Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci

* 'master' of git+ssh://git.overlays.gentoo.org/proj/sci:
  sci-libs/tmglib: Initial import
  removed mac files from jlec
  sci-astronomy/starlink-bin: Version bump
  sci-libs/plasma: Version bump. Introduce testing
  sci-libs/lapacke-reference: added tmg for testing, cleaning up ebuild
  sci-libs/lapack-reference: removed tmg flag, now separate ebuild
  sci-libs/lapack-reference: tmg flag description
  sci-libs/lapack-reference: Added tmg use flag, fix a failing post command test


 dev-util/.DS_Store                                 |  Bin 6148 -> 0 bytes
 eclass/.DS_Store                                   |  Bin 6148 -> 0 bytes
 sci-astronomy/starlink-bin/ChangeLog               |    7 ++-
 sci-astronomy/starlink-bin/Manifest                |    4 +-
 ...0110517.ebuild => starlink-bin-20120917.ebuild} |   12 ++--
 sci-libs/lapack-reference/ChangeLog                |   12 +++
 sci-libs/lapack-reference/Manifest                 |    2 -
 .../lapack-reference-3.3.1-r1.ebuild               |   84 --------------------
 .../lapack-reference/lapack-reference-3.4.1.ebuild |   62 --------------
 .../lapack-reference/lapack-reference-3.4.2.ebuild |    8 ++-
 .../lapack-reference/lapack-reference-9999.ebuild  |   64 +++++++---------
 sci-libs/lapack-reference/metadata.xml             |   11 ++-
 sci-libs/lapacke-reference/ChangeLog               |    4 +
 sci-libs/lapacke-reference/Manifest                |    1 -
 .../lapacke-reference-3.4.1.ebuild                 |   77 ------------------
 .../lapacke-reference-3.4.2.ebuild                 |   16 +++--
 sci-libs/lapacke-reference/metadata.xml            |   12 ++-
 sci-libs/plasma/ChangeLog                          |    6 ++
 sci-libs/plasma/Manifest                           |    2 +-
 .../{plasma-2.4.5.ebuild => plasma-2.4.6.ebuild}   |   31 +++++---
 sci-libs/tmglib/ChangeLog                          |    9 ++
 sci-libs/{blas-reference => tmglib}/Manifest       |    1 -
 .../scalapack => sci-libs/tmglib}/metadata.xml     |    3 +-
 sci-libs/tmglib/tmglib-3.4.2.ebuild                |   59 ++++++++++++++
 24 files changed, 184 insertions(+), 303 deletions(-)


^ permalink raw reply	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:pkg-config commit in: /
@ 2012-11-29 21:06 Justin Lecher
  0 siblings, 0 replies; 14+ messages in thread
From: Justin Lecher @ 2012-11-29 21:06 UTC (permalink / raw
  To: gentoo-commits

commit:     1a92c734df8facccb0cd960144034f2fad7333f5
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Nov 29 08:17:55 2012 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Nov 29 08:17:55 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1a92c734

Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci into pkg-config

# By Justin Lecher (68) and others
# Via Justin Lecher (10) and others
* 'master' of git+ssh://git.overlays.gentoo.org/proj/sci: (94 commits)
  sci-libs/tmglib: Initial import
  removed mac files from jlec
  sci-astronomy/starlink-bin: Version bump
  sci-libs/plasma: Version bump. Introduce testing
  sci-libs/lapacke-reference: added tmg for testing, cleaning up ebuild
  sci-libs/lapack-reference: removed tmg flag, now separate ebuild
  sci-libs/lapack-reference: tmg flag description
  sci-libs/lapack-reference: Added tmg use flag, fix a failing post command test
  Implemented comments from g-dev review
  Be bin package friendly
  Fix typo in Copyright year
  Implemented comments from g-dev review
  Only handle documentation if present
  intel-sdp.eclass: fix install on x86 + qa
  dev-python/pytools: fix test related stuff and license
  Drop USE=doc and add static-libs support
  Speed up unpacking #431614
  Drop additional blank lines.
  Drop old testing functions
  Resort general functions and variables at the beginning
  ...

# By Justin Lecher (68) and others
# Via Justin Lecher (10) and others
* master: (94 commits)
  sci-libs/tmglib: Initial import
  removed mac files from jlec
  sci-astronomy/starlink-bin: Version bump
  sci-libs/plasma: Version bump. Introduce testing
  sci-libs/lapacke-reference: added tmg for testing, cleaning up ebuild
  sci-libs/lapack-reference: removed tmg flag, now separate ebuild
  sci-libs/lapack-reference: tmg flag description
  sci-libs/lapack-reference: Added tmg use flag, fix a failing post command test
  Implemented comments from g-dev review
  Be bin package friendly
  Fix typo in Copyright year
  Implemented comments from g-dev review
  Only handle documentation if present
  intel-sdp.eclass: fix install on x86 + qa
  dev-python/pytools: fix test related stuff and license
  Drop USE=doc and add static-libs support
  Speed up unpacking #431614
  Drop additional blank lines.
  Drop old testing functions
  Resort general functions and variables at the beginning
  ...


 .DS_Store                                          |  Bin 0 -> 15364 bytes
 .gitignore                                         |    1 +
 app-portage/g-cran/ChangeLog                       |   20 -
 app-portage/g-cran/g-cran-9999.ebuild              |   25 -
 app-portage/g-cran/metadata.xml                    |   10 -
 dev-cpp/eigen/ChangeLog                            |    6 +
 dev-cpp/eigen/Manifest                             |    2 +-
 dev-cpp/eigen/eigen-3.0.6-r1.ebuild                |   84 -
 .../{eigen-3.1.1-r1.ebuild => eigen-3.1.2.ebuild}  |    0
 dev-cpp/eigen/metadata.xml                         |   14 +-
 dev-java/flexdock/ChangeLog                        |    4 +
 dev-java/flexdock/flexdock-1.1.1.ebuild            |    2 +-
 dev-java/hdf-java/ChangeLog                        |    6 +
 dev-java/hdf-java/Manifest                         |    1 +
 ...-2.8-shared.patch => hdf-java-2.9-shared.patch} |   19 +-
 .../{hdf-java-2.8.ebuild => hdf-java-2.9.ebuild}   |    0
 dev-lang/icc/ChangeLog                             |  461 +++
 dev-lang/icc/Manifest                              |    3 +
 dev-lang/icc/icc-13.0.1.117.ebuild                 |   36 +
 dev-lang/icc/metadata.xml                          |   20 +
 dev-lang/ifc/ChangeLog                             |  233 ++
 dev-lang/ifc/Manifest                              |    3 +
 dev-lang/ifc/ifc-13.0.1.117.ebuild                 |   37 +
 dev-lang/ifc/metadata.xml                          |   14 +
 dev-libs/intel-common/ChangeLog                    |   28 +
 dev-libs/intel-common/Manifest                     |    3 +
 .../intel-common/intel-common-13.0.1.117.ebuild    |   58 +
 dev-libs/intel-common/metadata.xml                 |   12 +
 dev-python/pycuda/ChangeLog                        |   93 +
 dev-python/pycuda/Manifest                         |    1 +
 .../eselect => dev-python/pycuda}/metadata.xml     |    5 +-
 dev-python/pycuda/pycuda-2012.1.ebuild             |   80 +
 dev-python/pytools/ChangeLog                       |   49 +
 dev-python/pytools/Manifest                        |    1 +
 .../eselect => dev-python/pytools}/metadata.xml    |    5 +-
 dev-python/pytools/pytools-2011.5.ebuild           |   24 +
 dev-util/nvidia-cuda-sdk/ChangeLog                 |   15 +
 dev-util/nvidia-cuda-sdk/Manifest                  |    2 +
 .../files/nvidia-cuda-sdk-5.0.35-asneeded.patch    | 4159 ++++++++++++++++++++
 dev-util/nvidia-cuda-sdk/metadata.xml              |   13 +-
 .../nvidia-cuda-sdk-4.2.9-r1.ebuild                |  112 +
 .../nvidia-cuda-sdk/nvidia-cuda-sdk-4.2.9.ebuild   |   69 -
 .../nvidia-cuda-sdk/nvidia-cuda-sdk-5.0.35.ebuild  |  119 +
 dev-util/nvidia-cuda-toolkit/ChangeLog             |   20 +
 dev-util/nvidia-cuda-toolkit/Manifest              |    6 +-
 dev-util/nvidia-cuda-toolkit/files/cuda-config.in  |   28 +
 dev-util/nvidia-cuda-toolkit/metadata.xml          |   13 +-
 .../nvidia-cuda-toolkit-4.2.9-r1.ebuild            |  106 +
 .../nvidia-cuda-toolkit-4.2.9.ebuild               |   73 -
 .../nvidia-cuda-toolkit-5.0.35.ebuild              |  111 +
 eclass/cuda.eclass                                 |  132 +
 eclass/intel-sdp.eclass                            |  433 ++
 profiles/package.use.mask                          |    4 +
 sci-astronomy/scamp/Manifest                       |    2 +-
 sci-astronomy/sextractor/Manifest                  |    2 +-
 sci-astronomy/skymaker/Manifest                    |    2 +-
 sci-astronomy/starlink-bin/ChangeLog               |    7 +-
 sci-astronomy/starlink-bin/Manifest                |    4 +-
 ...0110517.ebuild => starlink-bin-20120917.ebuild} |   12 +-
 sci-astronomy/stuff/Manifest                       |    2 +-
 sci-biology/staden/ChangeLog                       |   10 +-
 sci-biology/staden/Manifest                        |    4 +-
 sci-biology/staden/files/rpath.patch               |  123 -
 .../staden/files/staden-2.0.0_beta9-ldflags.patch  |   30 +
 .../files/staden-2.0.0_beta9-libpng-1.5.patch      |   16 +
 .../staden/files/staden-2.0.0_beta9-zlib.patch     |   16 +
 ....0.0_beta8.ebuild => staden-2.0.0_beta9.ebuild} |   55 +-
 sci-chemistry/gromacs/ChangeLog                    |    4 +
 sci-chemistry/gromacs/gromacs-4.6.9999.ebuild      |   30 +-
 sci-chemistry/gromacs/metadata.xml                 |    1 +
 sci-chemistry/nmrpipe/ChangeLog                    |    6 +
 sci-chemistry/nmrpipe/Manifest                     |    6 +-
 ...ebuild => nmrpipe-7.8.2012.295.14.58-r1.ebuild} |    0
 sci-chemistry/openbabel/ChangeLog                  |    3 +
 sci-chemistry/openbabel/openbabel-2.3.2.ebuild     |   16 +-
 sci-chemistry/vmd/ChangeLog                        |  238 ++
 sci-chemistry/vmd/Manifest                         |    2 +
 sci-chemistry/vmd/metadata.xml                     |   15 +
 sci-chemistry/vmd/vmd-1.9.1-r1.ebuild              |  223 ++
 sci-libs/lapack-reference/ChangeLog                |   12 +
 sci-libs/lapack-reference/Manifest                 |    2 -
 .../lapack-reference-3.3.1-r1.ebuild               |   84 -
 .../lapack-reference/lapack-reference-3.4.1.ebuild |   62 -
 .../lapack-reference/lapack-reference-3.4.2.ebuild |    8 +-
 .../lapack-reference/lapack-reference-9999.ebuild  |   64 +-
 sci-libs/lapack-reference/metadata.xml             |   11 +-
 sci-libs/lapacke-reference/ChangeLog               |    4 +
 sci-libs/lapacke-reference/Manifest                |    1 -
 .../lapacke-reference-3.4.1.ebuild                 |   77 -
 .../lapacke-reference-3.4.2.ebuild                 |   16 +-
 sci-libs/lapacke-reference/metadata.xml            |   12 +-
 sci-libs/magma/ChangeLog                           |    5 +
 sci-libs/magma/magma-1.2.1.ebuild                  |   29 +-
 sci-libs/magma/metadata.xml                        |    1 -
 sci-libs/openmm/ChangeLog                          |    9 +
 sci-libs/openmm/Manifest                           |    1 +
 .../openmm}/metadata.xml                           |    4 +
 sci-libs/openmm/openmm-4.1.1.ebuild                |   41 +
 sci-libs/plasma/ChangeLog                          |    6 +
 sci-libs/plasma/Manifest                           |    2 +-
 .../{plasma-2.4.5.ebuild => plasma-2.4.6.ebuild}   |   31 +-
 sci-libs/tmglib/ChangeLog                          |    9 +
 sci-libs/{blas-reference => tmglib}/Manifest       |    1 -
 .../scalapack => sci-libs/tmglib}/metadata.xml     |    3 +-
 sci-libs/tmglib/tmglib-3.4.2.ebuild                |   59 +
 sci-mathematics/scilab/scilab-5.4.0.ebuild         |   14 +-
 106 files changed, 7380 insertions(+), 792 deletions(-)


^ permalink raw reply	[flat|nested] 14+ messages in thread

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