From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 7E7C8138010 for ; Sun, 7 Oct 2012 09:19:20 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 467F2E030B; Sun, 7 Oct 2012 09:18:58 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) by pigeon.gentoo.org (Postfix) with ESMTP id AC95EE030B for ; Sun, 7 Oct 2012 09:18:57 +0000 (UTC) Received: from hornbill.gentoo.org (hornbill.gentoo.org [94.100.119.163]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id E28CC335DF3 for ; Sun, 7 Oct 2012 09:18:56 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by hornbill.gentoo.org (Postfix) with ESMTP id 956B8E5444 for ; Sun, 7 Oct 2012 09:18:55 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1349601362.31ebaca843da1dc44b5c7401ce84e63381654d35.jlec@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: / X-VCS-Repository: proj/sci X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: 31ebaca843da1dc44b5c7401ce84e63381654d35 X-VCS-Branch: master Date: Sun, 7 Oct 2012 09:18:55 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 60af1ce4-95a6-4e44-bb37-7d6505daf8fa X-Archives-Hash: 867b115b0e783fae2fd8a26bd26fe55f commit: 31ebaca843da1dc44b5c7401ce84e63381654d35 Author: Justin Lecher gentoo org> AuthorDate: Sun Oct 7 09:16:02 2012 +0000 Commit: Justin Lecher gentoo org> CommitDate: Sun Oct 7 09:16:02 2012 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=31ebaca8 Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci # By Justin Lecher (20) and others # Via Jens-Malte Gottfried (1) and Justin Lecher (1) * 'master' of git+ssh://git.overlays.gentoo.org/proj/sci: (41 commits) fix to build petsc in Gentoo Prefix (thanks to Matthias Maier) live ebuild update live ebuild update updated package.mask cmake-utils.eclass got merged in gx86 hybrid stuff got merged [sci-mathematics/scilab] fix errors in previous commit [sci-mathematics/scilab] version bump [dev-java/scirenderer] version bump version bump app-benchmarks/numbench: Updated dependency for eselect alternatives sci-libs/mkl: Version bump sci-libs/acml: Version bump [sci-mathematics/scilab] update dependencies [dev-java/scirenderer] version bump [dev-java/jlatexmath-fop] version bump [dev-java/jlatexmath] version bump app-admin/eselect: rev-bumped to avoid conflict with tree sci-chemistry/specView: Needs webkit support in pyside sci-chemistry/chemBuild: Needs webkit support in pyside ... Conflicts: app-admin/eselect/ChangeLog app-admin/eselect/Manifest app-admin/eselect/Manifest | 1 - ...t-1.3.1-r1.ebuild => eselect-1.3.2-r100.ebuild} | 18 +- app-benchmarks/numbench/ChangeLog | 5 + app-benchmarks/numbench/Manifest | 2 - app-benchmarks/numbench/numbench-0.2.ebuild | 4 +- .../numbench/numbench-0.2_beta4-r1.ebuild | 35 -- app-benchmarks/numbench/numbench-0.2_beta4.ebuild | 35 -- app-benchmarks/numbench/numbench-9999.ebuild | 2 +- app-doc/gromacs-manual/ChangeLog | 9 +- ...-9999.ebuild => gromacs-manual-4.6.9999.ebuild} | 17 +- app-doc/gromacs-manual/gromacs-manual-9999.ebuild | 17 +- dev-java/jlatexmath-fop/ChangeLog | 6 + dev-java/jlatexmath-fop/Manifest | 1 + ...op-0.9.7.ebuild => jlatexmath-fop-1.0.0.ebuild} | 2 +- dev-java/jlatexmath/ChangeLog | 6 + dev-java/jlatexmath/Manifest | 1 + ...exmath-0.9.7.ebuild => jlatexmath-1.0.0.ebuild} | 6 +- dev-java/scirenderer/ChangeLog | 12 + dev-java/scirenderer/Manifest | 2 +- ...derer-0.5.6.ebuild => scirenderer-1.0.2.ebuild} | 2 +- eclass/cmake-utils.eclass | 530 -------------------- eclass/intel-sdp.eclass | 187 ------- licenses/chimera | 13 + licenses/phenix | 174 +++++++ profiles/package.mask | 6 +- sci-chemistry/chemBuild/ChangeLog | 13 + sci-chemistry/chemBuild/Manifest | 1 + sci-chemistry/chemBuild/chemBuild-1.0.2.ebuild | 68 +++ sci-chemistry/chemBuild/files/chemBuild | 9 + .../chemBuild}/metadata.xml | 0 sci-chemistry/chimera-bin/ChangeLog | 16 + sci-chemistry/chimera-bin/Manifest | 2 + sci-chemistry/chimera-bin/chimera-bin-1.6.2.ebuild | 64 +++ .../chimera-bin}/metadata.xml | 0 sci-chemistry/gromacs/ChangeLog | 8 + sci-chemistry/gromacs/gromacs-4.6.9999.ebuild | 26 +- sci-chemistry/gromacs/gromacs-9999.ebuild | 5 +- sci-chemistry/gromacs/metadata.xml | 1 - sci-chemistry/phenix-bin/ChangeLog | 23 + sci-chemistry/phenix-bin/Manifest | 2 + .../phenix-bin}/metadata.xml | 0 .../phenix-bin/phenix-bin-1.8.1069.ebuild | 87 ++++ sci-chemistry/specView/ChangeLog | 19 + sci-chemistry/specView/Manifest | 1 + sci-chemistry/specView/files/specView | 9 + .../specView}/metadata.xml | 0 sci-chemistry/specView/specView-1.0.2.ebuild | 108 ++++ sci-libs/acml/ChangeLog | 6 + sci-libs/acml/Manifest | 44 +- .../acml/{acml-5.1.0.ebuild => acml-5.2.0.ebuild} | 2 +- sci-libs/mkl/ChangeLog | 7 +- sci-libs/mkl/Manifest | 9 +- sci-libs/mkl/mkl-10.3.7.256.ebuild | 136 ----- ...mkl-10.3.4.191.ebuild => mkl-11.0.0.079.ebuild} | 9 +- sci-libs/nfft/ChangeLog | 5 + sci-libs/nfft/Manifest | 1 + .../nfft/{nfft-3.2.0.ebuild => nfft-3.2.1.ebuild} | 4 + sci-mathematics/petsc/petsc-3.3_p1.ebuild | 2 +- sci-mathematics/scilab/ChangeLog | 18 + sci-mathematics/scilab/Manifest | 1 + ... scilab-5.4.0-fix-random-runtime-failure.patch} | 0 ...wlinks.patch => scilab-5.4.0-followlinks.patch} | 0 ...-link.patch => scilab-5.4.0-fortran-link.patch} | 0 ...99-gluegen.patch => scilab-5.4.0-gluegen.patch} | 0 ...ava-heap.patch => scilab-5.4.0-java-heap.patch} | 10 +- .../{scilab-5.3.999.ebuild => scilab-5.4.0.ebuild} | 21 +- sci-visualization/paraview/ChangeLog | 6 + sci-visualization/paraview/metadata.xml | 1 + ...-3.14.1-r3.ebuild => paraview-3.14.1-r4.ebuild} | 8 +- skel.ChangeLog | 2 +- skel.ebuild | 12 +- skel.metadata.xml | 28 +- sys-cluster/lustre/ChangeLog | 6 + ...7-vfs-kernel-3.1-renames-lock-manager-ops.patch | 190 +++++++ ...37-vfs-kernel-3.1-kills-inode-i_alloc_sem.patch | 446 ++++++++++++++++ ...fs-kernel-3.1-changes-open_to_namei_flags.patch | 95 ++++ ...7-vfs-provides-ll_get_acl-to-i_op-get_acl.patch | 150 ++++++ ...ck-kernel-3.2-make_request_fn-returns-voi.patch | 108 ++++ ...337-vfs-kernel-3.2-protects-inode-i_nlink.patch | 194 +++++++ ...-3.3-changes-super_operations-inode_opera.patch | 217 ++++++++ ...nel-remove-unnecessary-includings-of-syst.patch | 211 ++++++++ ...-kernel-3.4-touch_atime-switchs-to-1-argu.patch | 89 ++++ ...-kernel-3.4-converts-d_alloc_root-to-d_ma.patch | 128 +++++ ...1-LU-1337-kernel-v3.5-defines-INVALID_UID.patch | 31 ++ ...te-kernel-3.5-renames-end_writeback-to-cl.patch | 90 ++++ ...nel-3.5-kernel-encode_fh-passes-in-parent.patch | 88 ++++ sys-cluster/lustre/lustre-9999.ebuild | 73 +++ sys-cluster/{blcr => lustre}/metadata.xml | 5 +- 88 files changed, 2949 insertions(+), 1059 deletions(-)