From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id E9321138010 for ; Thu, 30 Aug 2012 08:38:38 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id A5D64E0700; Thu, 30 Aug 2012 08:38:31 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) by pigeon.gentoo.org (Postfix) with ESMTP id 67A91E0700 for ; Thu, 30 Aug 2012 08:38:31 +0000 (UTC) Received: from hornbill.gentoo.org (hornbill.gentoo.org [94.100.119.163]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id A543133D841 for ; Thu, 30 Aug 2012 08:38:30 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by hornbill.gentoo.org (Postfix) with ESMTP id 6F2FBE543C for ; Thu, 30 Aug 2012 08:38:28 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1346314906.40efcb7e2072e2e49f02d7451a9ab930775f40a5.jlec@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: eclass/ X-VCS-Repository: proj/sci X-VCS-Files: eclass/ligplot+ X-VCS-Directories: eclass/ X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: 40efcb7e2072e2e49f02d7451a9ab930775f40a5 X-VCS-Branch: master Date: Thu, 30 Aug 2012 08:38:28 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: c9cca04a-bf1b-4fb6-b5e4-ea04c1a73e2e X-Archives-Hash: 6f0f5a5fa19513843b717d1750bfe26f commit: 40efcb7e2072e2e49f02d7451a9ab930775f40a5 Author: Justin Lecher gentoo org> AuthorDate: Thu Aug 30 08:21:46 2012 +0000 Commit: Justin Lecher gentoo org> CommitDate: Thu Aug 30 08:21:46 2012 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=40efcb7e add license --- eclass/ligplot+ | 138 +++++++++++++++++++++++++++++++++++++++++++++++++++++++ 1 files changed, 138 insertions(+), 0 deletions(-) diff --git a/eclass/ligplot+ b/eclass/ligplot+ new file mode 100644 index 0000000..7457f66 --- /dev/null +++ b/eclass/ligplot+ @@ -0,0 +1,138 @@ +LIGPLOT - Automated representation of protein-ligand interactions + ---------------------------------------------------------------- + + CONFIDENTIALITY AGREEMENT + ------------------------- + + + +In regard to the LIGPLOT , specified in the Appendix herewith +(the Software) supplied to us, the copyright and other +intellectual property rights to which belong to the authors, we + + + __________________________________________________________________ + +undertake to the authors that we shall be bound by the following terms +and conditions:- + +1. We will receive the Software and any related documentation in +confidence and will not use the same except for the purpose of the +department's own research. The Software will be used only by such of +our officers or employees to whom it must reasonably be communicated +to enable us to undertake our research and who agree to be bound by +the same confidence. The department shall procure and enforce such +agreement from its staff for the benefit of the authors. + +2. The publication of research using the Software must reference +"Wallace A C, Laskowski R A, Thornton J M (1995). LIGPLOT: A program +to generate schematic diagrams of protein-ligand interactions. Protein +Engineering, 8, 127-134." + +3. Research shall take place solely at the department's premises at + + + __________________________________________________________________ + +4. All forms of the Software will be kept in a reasonably secure place + to prevent unauthorised access. + +5. Each copy of the Software or, if not practicable then, any package +associated therewith shall be suitably marked (and such marking +maintained) with the following copyright notice: " Copyright 1994 +A C Wallace, R A Laskowski, & J M Thornton All Rights Reserved". + +6. The Software may be modified but any changes made shall be made +available to the authors. + +7. The Software shall be used exclusively for academic teaching and +research. The Software will not be used for any commercial research or +research associated with an industrial company. + +8. The confidentiality obligation in paragraph one shall not apply: + + (i) to information and data known to the department at the time of + receipt hereunder (as evidenced by its written records); + + (ii) to information and data which was at the time of receipt in the + public domain or thereafter becomes so through no wrongful act of + the department; + + (iii) to information and data which the department receives from a third + party not in breach of any obligation of confidentiality owed to + the authors. + +Please sign this Undertaking and return a copy of it to indicate that you +have read, understood and accepted the above terms. + + + + For and on behalf of _____________________________ + + _________________________________________________ + + .................................................. + + Dated ............................................ + + + +e-mail address ___________________________ + + + +Please complete the above form, sign it, and then send it, or fax it, to:- + + +Roman Laskowski +European Bioinformatics Institute, +Wellcome Trust Genome Campus, +Hinxton, +Cambridge, CB10 1SD, +United Kingdom + +Fax:- +44 (0)1223 494 468 + +roman@ebi.ac.uk + + +If you have any problems either installing the software or running it, +please e-mail your problems to:- + + roman@ebi.ac.uk + + +APPENDIX - Files supplied as part of the LIGPLOT program +-------------------------------------------------------- + +Source program files:- +1. ligplot.c +2. ligplot.h +3. hbadd.c +4. hbadd.h +5. dimer.c +6. dimer.h + +Script files:- +1. ligplot.scr +2. ligonly.scr +3. dimplot.scr +4. dimonly.scr + +Parameter file:- +1. ligplot.prm + +Installation instructions:- +1. install.doc + +Documentation:- +1. manual.tar.Z +2. README + +Confidentiality Agreement:- +1. confid.txt + + + + v.4.4.2 - 7 Mar 2003 +