[gentoo-commits] proj/sci:master commit in: sci-biology/cufflinks/

[gentoo-commits] proj/sci:master commit in: sci-biology/cufflinks/

[Martin Mokrejs]

commit:     581422e856ed8f24b71a8b2061890299ece10fd4
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Mar  2 19:05:40 2012 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Mar  2 19:05:40 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=581422e8

sci-biology/cufflinks: new package

(Portage version: 2.1.10.49/git/Linux x86_64, unsigned Manifest commit)

---
 sci-biology/cufflinks/ChangeLog              |   10 ++++++++++
 sci-biology/cufflinks/cufflinks-1.3.0.ebuild |   20 ++++++++++++++++++++
 sci-biology/cufflinks/metadata.xml           |    9 +++++++++
 3 files changed, 39 insertions(+), 0 deletions(-)

diff --git a/sci-biology/cufflinks/ChangeLog b/sci-biology/cufflinks/ChangeLog
new file mode 100644
index 0000000..40edfe1
--- /dev/null
+++ b/sci-biology/cufflinks/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/cufflinks
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*cufflinks-1.3.0 (02 Mar 2012)
+
+  02 Mar 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +cufflinks-1.3.0.ebuild, +metadata.xml:
+  initial and working ebuild
+

diff --git a/sci-biology/cufflinks/cufflinks-1.3.0.ebuild b/sci-biology/cufflinks/cufflinks-1.3.0.ebuild
new file mode 100644
index 0000000..e67e77b
--- /dev/null
+++ b/sci-biology/cufflinks/cufflinks-1.3.0.ebuild
@@ -0,0 +1,20 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+DESCRIPTION="RNA-Seq assembly and analysis tool of SAM/BAM file inputs"
+HOMEPAGE="http://cufflinks.cbcb.umd.edu"
+SRC_URI="http://cufflinks.cbcb.umd.edu/downloads/"${PN}"-"${PV}".tar.gz"
+
+LICENSE="Boost-1.0"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="dev-libs/boost
+		sci-libs/lemon
+		sys-libs/zlib"
+RDEPEND="${DEPEND}
+		sci-biology/tophat"

diff --git a/sci-biology/cufflinks/metadata.xml b/sci-biology/cufflinks/metadata.xml
new file mode 100644
index 0000000..07b5255
--- /dev/null
+++ b/sci-biology/cufflinks/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci-biology</herd>
+	<maintainer>
+		<email>mmokrejs@fold.natur.cuni.cz</email>
+		<name>Martin Mokrejs</name>
+	</maintainer>
+</pkgmetadata>

[gentoo-commits] proj/sci:master commit in: sci-biology/cufflinks/

[Andrey Kislyuk]

commit:     efb3ee2fe849c0c706990c9b20c91833c2013a17
Author:     Andrey Kislyuk <kislyuk <AT> gmail <DOT> com>
AuthorDate: Sun Apr 15 21:30:30 2012 +0000
Commit:     Andrey Kislyuk <weaver <AT> gentoo <DOT> org>
CommitDate: Sun Apr 15 21:30:30 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=efb3ee2f

in main tree

---
 sci-biology/cufflinks/ChangeLog              |   10 ----------
 sci-biology/cufflinks/cufflinks-1.3.0.ebuild |   20 --------------------
 sci-biology/cufflinks/metadata.xml           |    9 ---------
 3 files changed, 0 insertions(+), 39 deletions(-)

diff --git a/sci-biology/cufflinks/ChangeLog b/sci-biology/cufflinks/ChangeLog
deleted file mode 100644
index 40edfe1..0000000
--- a/sci-biology/cufflinks/ChangeLog
+++ /dev/null
@@ -1,10 +0,0 @@
-# ChangeLog for sci-biology/cufflinks
-# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*cufflinks-1.3.0 (02 Mar 2012)
-
-  02 Mar 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
-  +cufflinks-1.3.0.ebuild, +metadata.xml:
-  initial and working ebuild
-

diff --git a/sci-biology/cufflinks/cufflinks-1.3.0.ebuild b/sci-biology/cufflinks/cufflinks-1.3.0.ebuild
deleted file mode 100644
index e67e77b..0000000
--- a/sci-biology/cufflinks/cufflinks-1.3.0.ebuild
+++ /dev/null
@@ -1,20 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=3
-
-DESCRIPTION="RNA-Seq assembly and analysis tool of SAM/BAM file inputs"
-HOMEPAGE="http://cufflinks.cbcb.umd.edu"
-SRC_URI="http://cufflinks.cbcb.umd.edu/downloads/"${PN}"-"${PV}".tar.gz"
-
-LICENSE="Boost-1.0"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND="dev-libs/boost
-		sci-libs/lemon
-		sys-libs/zlib"
-RDEPEND="${DEPEND}
-		sci-biology/tophat"

diff --git a/sci-biology/cufflinks/metadata.xml b/sci-biology/cufflinks/metadata.xml
deleted file mode 100644
index 07b5255..0000000
--- a/sci-biology/cufflinks/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<herd>sci-biology</herd>
-	<maintainer>
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-</pkgmetadata>