From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1SAorx-0006Gz-HF for garchives@archives.gentoo.org; Thu, 22 Mar 2012 20:44:25 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id DD4E2E0998; Thu, 22 Mar 2012 20:44:07 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) by pigeon.gentoo.org (Postfix) with ESMTP id B0953E0998 for ; Thu, 22 Mar 2012 20:44:07 +0000 (UTC) Received: from hornbill.gentoo.org (hornbill.gentoo.org [94.100.119.163]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 1DDF71B401B for ; Thu, 22 Mar 2012 20:44:07 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by hornbill.gentoo.org (Postfix) with ESMTP id DC9E5E5403 for ; Thu, 22 Mar 2012 20:44:05 +0000 (UTC) From: "Andrey Kislyuk" To: gentoo-commits@lists.gentoo.org Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Andrey Kislyuk" Message-ID: <1332449026.773f59b25f75fd5e9b2492e3bd5c318c520d4866.weaver@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/blasr/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/blasr/ChangeLog sci-biology/blasr/blasr-9999.ebuild sci-biology/blasr/metadata.xml X-VCS-Directories: sci-biology/blasr/ X-VCS-Committer: weaver X-VCS-Committer-Name: Andrey Kislyuk X-VCS-Revision: 773f59b25f75fd5e9b2492e3bd5c318c520d4866 X-VCS-Branch: master Date: Thu, 22 Mar 2012 20:44:05 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: quoted-printable X-Archives-Salt: 91f16364-22c2-494d-8d8a-8af055809f1b X-Archives-Hash: b1695401863c06ae7af10b4f42769ff5 commit: 773f59b25f75fd5e9b2492e3bd5c318c520d4866 Author: Andrey Kislyuk gmail com> AuthorDate: Thu Mar 22 20:43:46 2012 +0000 Commit: Andrey Kislyuk gentoo org> CommitDate: Thu Mar 22 20:43:46 2012 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=3Dproj/sci.git;a=3Dc= ommit;h=3D773f59b2 New package, ebuild written by me --- sci-biology/blasr/ChangeLog | 10 ++++++++++ sci-biology/blasr/blasr-9999.ebuild | 33 +++++++++++++++++++++++++++++= ++++ sci-biology/blasr/metadata.xml | 9 +++++++++ 3 files changed, 52 insertions(+), 0 deletions(-) diff --git a/sci-biology/blasr/ChangeLog b/sci-biology/blasr/ChangeLog new file mode 100644 index 0000000..f10ba22 --- /dev/null +++ b/sci-biology/blasr/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/blasr +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*blasr-9999 (22 Mar 2012) + + 22 Mar 2012; Andrey Kislyuk +blasr-9999.ebuild, + +metadata.xml: + New package, ebuild written by me + diff --git a/sci-biology/blasr/blasr-9999.ebuild b/sci-biology/blasr/blas= r-9999.ebuild new file mode 100644 index 0000000..94e874f --- /dev/null +++ b/sci-biology/blasr/blasr-9999.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/gatk-9999.ebuild,v 1= .1 2011/10/31 21:18:17 weaver Exp $ + +EAPI=3D4 + +MY_HASH=3D885c33a + +EGIT_REPO_URI=3D"https://github.com/PacificBiosciences/blasr.git" + +inherit git + +DESCRIPTION=3D"The PacBio long read aligner" +HOMEPAGE=3D"http://www.smrtcommunity.com/SMRT-Analysis/Algorithms/BLASR" +#SRC_URI=3D"https://github.com/PacificBiosciences/blasr/tarball/${PV} ->= ${P}.tar.gz" +SRC_URI=3D"" + +LICENSE=3D"as-is" +SLOT=3D"0" +IUSE=3D"" +KEYWORDS=3D"" + +DEPEND=3D"sci-libs/hdf5[cxx]" +RDEPEND=3D"" + +S=3D"${WORKDIR}/blasr-${MY_HASH}" + +ASSEMBLY_HOME=3D"${D}/usr" + +src_install() { + dodir /usr/bin + make install ASSEMBLY_HOME=3D"${D}/usr" || die +} diff --git a/sci-biology/blasr/metadata.xml b/sci-biology/blasr/metadata.= xml new file mode 100644 index 0000000..3302123 --- /dev/null +++ b/sci-biology/blasr/metadata.xml @@ -0,0 +1,9 @@ + + + + + weaver@gentoo.org + Andrey Kislyuk + + sci-biology +