From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1S48j6-0000ph-NV for garchives@archives.gentoo.org; Sun, 04 Mar 2012 10:31:41 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id A37AEE0444; Sun, 4 Mar 2012 10:31:33 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) by pigeon.gentoo.org (Postfix) with ESMTP id 655B3E0444 for ; Sun, 4 Mar 2012 10:31:33 +0000 (UTC) Received: from hornbill.gentoo.org (hornbill.gentoo.org [94.100.119.163]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id A1EC51B400A for ; Sun, 4 Mar 2012 10:31:32 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by hornbill.gentoo.org (Postfix) with ESMTP id 6A6E9E5401 for ; Sun, 4 Mar 2012 10:31:31 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1330857075.e30b4c139db3db8f0fc6d3086d21896f12238960.jlec@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-chemistry/openbabel/files/, sci-chemistry/openbabel-python/files/, ... X-VCS-Repository: proj/sci X-VCS-Files: sci-chemistry/openbabel-perl/ChangeLog sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.1-makefile.patch sci-chemistry/openbabel-perl/metadata.xml sci-chemistry/openbabel-perl/openbabel-perl-2.3.1.ebuild sci-chemistry/openbabel-python/ChangeLog sci-chemistry/openbabel-python/files/openbabel-python-2.3.1-system_openbabel.patch sci-chemistry/openbabel-python/metadata.xml sci-chemistry/openbabel-python/openbabel-python-2.3.1.ebuild sci-chemistry/openbabel/ChangeLog sci-chemistry/openbabel/files/openbabel-2.3.0-test_lib_path.patch sci-chemistry/openbabel/metadata.xml sci-chemistry/openbabel/openbabel-2.3.1.ebuild X-VCS-Directories: sci-chemistry/openbabel/files/ sci-chemistry/openbabel-python/files/ sci-chemistry/openbabel-python/ sci-chemistry/openbabel-perl/ sci-chemistry/openbabel/ sci-chemistry/openbabel-perl/files/ X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: e30b4c139db3db8f0fc6d3086d21896f12238960 X-VCS-Branch: master Date: Sun, 4 Mar 2012 10:31:31 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: quoted-printable X-Archives-Salt: 2b786636-0d4c-4303-890a-97720019894f X-Archives-Hash: 000f1ca3c194a7be12bb29535cce10e4 commit: e30b4c139db3db8f0fc6d3086d21896f12238960 Author: Justin Lecher gentoo org> AuthorDate: Sun Mar 4 10:31:15 2012 +0000 Commit: Justin Lecher gentoo org> CommitDate: Sun Mar 4 10:31:15 2012 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=3Dproj/sci.git;a=3Dc= ommit;h=3De30b4c13 Moved to tree --- sci-chemistry/openbabel-perl/ChangeLog | 10 --- .../files/openbabel-perl-2.3.1-makefile.patch | 9 --- sci-chemistry/openbabel-perl/metadata.xml | 12 ---- .../openbabel-perl/openbabel-perl-2.3.1.ebuild | 69 --------------= ------ sci-chemistry/openbabel-python/ChangeLog | 10 --- .../openbabel-python-2.3.1-system_openbabel.patch | 15 ---- sci-chemistry/openbabel-python/metadata.xml | 12 ---- .../openbabel-python/openbabel-python-2.3.1.ebuild | 53 --------------= - sci-chemistry/openbabel/ChangeLog | 11 --- .../files/openbabel-2.3.0-test_lib_path.patch | 12 ---- sci-chemistry/openbabel/metadata.xml | 14 ---- sci-chemistry/openbabel/openbabel-2.3.1.ebuild | 69 --------------= ------ 12 files changed, 0 insertions(+), 296 deletions(-) diff --git a/sci-chemistry/openbabel-perl/ChangeLog b/sci-chemistry/openb= abel-perl/ChangeLog deleted file mode 100644 index b6a2102..0000000 --- a/sci-chemistry/openbabel-perl/ChangeLog +++ /dev/null @@ -1,10 +0,0 @@ -# ChangeLog for sci-chemistry/openbabel-perl -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: $ - -*openbabel-perl-2.3.1 (10 Nov 2011) - - 10 Nov 2011; Reinis Danne +openbabel-perl-2.3.1.eb= uild, - +files/openbabel-perl-2.3.1-makefile.patch, +metadata.xml: - Version bump to 2.3.1 - diff --git a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.1-make= file.patch b/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.1-make= file.patch deleted file mode 100644 index 88248b4..0000000 --- a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.1-makefile.pa= tch +++ /dev/null @@ -1,9 +0,0 @@ ---- scripts/perl/Makefile.PL -+++ scripts/perl/Makefile.PL -@@ -37,5 +37,6 @@ 'LDFROM' =3D> $ldfrom, - 'CC' =3D> $CC, - 'LD' =3D> '$(CC)', - 'INC' =3D> '-I../../include -I'.$cmakesrcdir.'/include', -+ 'DESTDIR' =3D> @ENV{"D"}, - 'OBJECT' =3D> 'openbabel-perl.o' - ); diff --git a/sci-chemistry/openbabel-perl/metadata.xml b/sci-chemistry/op= enbabel-perl/metadata.xml deleted file mode 100644 index 433cfe8..0000000 --- a/sci-chemistry/openbabel-perl/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ - - - - sci-chemistry - - OpenBabel is a chemical toolbox designed to speak the many languages o= f - chemical data. It's an open, collaborative project allowing anyone to - search, convert, analyze, or store data from molecular modeling, chemi= stry, - solid-state materials, biochemistry, or related areas. This package en= ables - to access OpenBabel library from Python programs. - - diff --git a/sci-chemistry/openbabel-perl/openbabel-perl-2.3.1.ebuild b/s= ci-chemistry/openbabel-perl/openbabel-perl-2.3.1.ebuild deleted file mode 100644 index 96f267f..0000000 --- a/sci-chemistry/openbabel-perl/openbabel-perl-2.3.1.ebuild +++ /dev/null @@ -1,69 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel-perl/openbabe= l-perl-2.3.0.ebuild,v 1.3 2011/03/29 06:00:42 jlec Exp $ - -EAPI=3D"3" - -inherit cmake-utils eutils perl-module - -DESCRIPTION=3D"Perl bindings for OpenBabel" -HOMEPAGE=3D"http://openbabel.sourceforge.net/" -SRC_URI=3D"mirror://sourceforge/openbabel/openbabel-${PV}.tar.gz" - -KEYWORDS=3D"~amd64 ~x86 ~amd64-linux ~x86-linux" -SLOT=3D"0" -LICENSE=3D"GPL-2" -IUSE=3D"" - -RDEPEND=3D" - dev-lang/perl - ~sci-chemistry/openbabel-${PV}" -DEPEND=3D"${RDEPEND} - >=3Ddev-lang/swig-2 - dev-util/cmake" - -S=3D"${WORKDIR}/openbabel-${PV}" - -src_prepare() { - epatch \ - "${FILESDIR}/${P}-makefile.patch" -} - -src_configure() { - local mycmakeargs=3D"-DPERL_BINDINGS=3DON" - mycmakeargs=3D"${mycmakeargs} - -DRUN_SWIG=3DON" - cmake-utils_src_configure -} - -src_compile() { - cd "${WORKDIR}/${P}_build/scripts" - perl-module_src_prep - perl-module_src_compile -} - -src_test() { - cd "${WORKDIR}/${P}_build/scripts" - emake test || die "make test failed" -} - -src_install() { - cd "${WORKDIR}/${P}_build/scripts/perl" - perl-module_src_install -} - -pkg_preinst() { - perl-module_pkg_preinst -} - -pkg_postinst() { - perl-module_pkg_postinst -} - -pkg_prerm() { - perl-module_pkg_prerm -} - -pkg_postrm() { - perl-module_pkg_postrm -} diff --git a/sci-chemistry/openbabel-python/ChangeLog b/sci-chemistry/ope= nbabel-python/ChangeLog deleted file mode 100644 index 0378f55..0000000 --- a/sci-chemistry/openbabel-python/ChangeLog +++ /dev/null @@ -1,10 +0,0 @@ -# ChangeLog for sci-chemistry/openbabel-python -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: $ - -*openbabel-python-2.3.1 (10 Nov 2011) - - 10 Nov 2011; Reinis Danne +openbabel-python-2.3.1.= ebuild, - +files/openbabel-python-2.3.1-system_openbabel.patch, +metadata.xml: - Version bump to 2.3.1 - diff --git a/sci-chemistry/openbabel-python/files/openbabel-python-2.3.1-= system_openbabel.patch b/sci-chemistry/openbabel-python/files/openbabel-p= ython-2.3.1-system_openbabel.patch deleted file mode 100644 index 6420bba..0000000 --- a/sci-chemistry/openbabel-python/files/openbabel-python-2.3.1-system_= openbabel.patch +++ /dev/null @@ -1,15 +0,0 @@ ---- scripts/python/setup.py -+++ scripts/python/setup.py -@@ -15,11 +15,7 @@ -=20 - obExtension =3D Extension('_openbabel', - [os.path.join(srcdir, "openbabel-python.cpp")], -- include_dirs=3D[os.path.join(srcdir, "..", "..", "incl= ude"), -- os.path.join("..", "include")], -- library_dirs=3D[os.path.join(srcdir, "..", "..", "lib"= ), -- os.path.join(srcdir, "..", "..", "lib64"= ), -- os.path.join("..", "lib")], -+ include_dirs=3D[os.path.join("/usr", "include", "openb= abel-2.0")], - libraries=3D['openbabel'] - ) -=20 diff --git a/sci-chemistry/openbabel-python/metadata.xml b/sci-chemistry/= openbabel-python/metadata.xml deleted file mode 100644 index 433cfe8..0000000 --- a/sci-chemistry/openbabel-python/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ - - - - sci-chemistry - - OpenBabel is a chemical toolbox designed to speak the many languages o= f - chemical data. It's an open, collaborative project allowing anyone to - search, convert, analyze, or store data from molecular modeling, chemi= stry, - solid-state materials, biochemistry, or related areas. This package en= ables - to access OpenBabel library from Python programs. - - diff --git a/sci-chemistry/openbabel-python/openbabel-python-2.3.1.ebuild= b/sci-chemistry/openbabel-python/openbabel-python-2.3.1.ebuild deleted file mode 100644 index 0da030f..0000000 --- a/sci-chemistry/openbabel-python/openbabel-python-2.3.1.ebuild +++ /dev/null @@ -1,53 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel-python/openba= bel-python-2.3.0.ebuild,v 1.7 2011/09/14 05:06:41 jlec Exp $ - -EAPI=3D"3" - -PYTHON_DEPEND=3D"2" -SUPPORT_PYTHON_ABIS=3D"1" -RESTRICT_PYTHON_ABIS=3D"*-jython" -PYTHON_MODNAME=3D"openbabel.py pybel.py" - -inherit distutils eutils flag-o-matic - -DESCRIPTION=3D"Python bindings for OpenBabel (including Pybel)" -HOMEPAGE=3D"http://openbabel.sourceforge.net/" -SRC_URI=3D"mirror://sourceforge/openbabel/openbabel-${PV}.tar.gz" - -KEYWORDS=3D"~amd64 ~x86 ~amd64-linux ~x86-linux" -SLOT=3D"0" -LICENSE=3D"GPL-2" -IUSE=3D"" - -RDEPEND=3D" - dev-cpp/eigen:2 - dev-libs/libxml2:2 - !sci-chemistry/babel - ~sci-chemistry/openbabel-${PV} - sys-libs/zlib" -DEPEND=3D"${RDEPEND} - >=3Ddev-lang/swig-2" - -S=3D"${WORKDIR}"/openbabel-${PV} - -DISTUTILS_SETUP_FILES=3D("scripts|python/setup.py") - -src_prepare() { - epatch \ - "${FILESDIR}"/${P}-system_openbabel.patch - - sed \ - -e "s:/usr:${EPREFIX}/usr:g" \ - -i ./scripts/python/setup.py || die - - swig -python -c++ -small -O -templatereduce -naturalvar \ - -I"${EPREFIX}/usr/include/openbabel-2.0" \ - -o scripts/python/openbabel-python.cpp \ - -DHAVE_EIGEN2 \ - -outdir scripts/python \ - scripts/openbabel-python.i \ - || die "Regeneration of openbabel-python.cpp failed" - - append-cxxflags "$(pkg-config --cflags-only-I eigen2)" -} diff --git a/sci-chemistry/openbabel/ChangeLog b/sci-chemistry/openbabel/= ChangeLog deleted file mode 100644 index d05cfda..0000000 --- a/sci-chemistry/openbabel/ChangeLog +++ /dev/null @@ -1,11 +0,0 @@ -# ChangeLog for sci-chemistry/openbabel -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: $ - -*openbabel-2.3.1 (10 Nov 2011) - - 10 Nov 2011; Reinis Danne - +files/openbabel-2.3.0-test_lib_path.patch, +openbabel-2.3.1.ebuild, - +metadata.xml: - Version bump to 2.3.1 - diff --git a/sci-chemistry/openbabel/files/openbabel-2.3.0-test_lib_path.= patch b/sci-chemistry/openbabel/files/openbabel-2.3.0-test_lib_path.patch deleted file mode 100644 index 014da6b..0000000 --- a/sci-chemistry/openbabel/files/openbabel-2.3.0-test_lib_path.patch +++ /dev/null @@ -1,12 +0,0 @@ -diff -ru old/openbabel-2.3.0/test/CMakeLists.txt new/openbabel-2.3.0/tes= t/CMakeLists.txt ---- old/openbabel-2.3.0/test/CMakeLists.txt 2010-10-26 17:39:01.00000000= 0 +0300 -+++ new/openbabel-2.3.0/test/CMakeLists.txt 2010-11-14 18:13:32.00000000= 0 +0200 -@@ -2,7 +2,7 @@ - add_definitions(-DTESTDATADIR=3D"\\"${CMAKE_SOURCE_DIR}/test/files/\\""= ) -=20 - # define FORMATDIR for location of format plugin binaries --add_definitions(-DFORMATDIR=3D"\\"${openbabel_BINARY_DIR}/lib/\\"") -+add_definitions(-DFORMATDIR=3D"\\"${openbabel_BINARY_DIR}/lib${LIB_SUFF= IX}/\\"") -=20 - ########################################################### - # new tests using obtest.h diff --git a/sci-chemistry/openbabel/metadata.xml b/sci-chemistry/openbab= el/metadata.xml deleted file mode 100644 index 7c0c529..0000000 --- a/sci-chemistry/openbabel/metadata.xml +++ /dev/null @@ -1,14 +0,0 @@ - - - - sci-chemistry - - Open Babel is a chemical toolbox designed to speak the many language= s of - chemical data. It's an open, collaborative project allowing anyone to - search, convert, analyze, or store data from molecular modeling, chemis= try, - solid-state materials, biochemistry, or related areas. - - - Build GUI. - - diff --git a/sci-chemistry/openbabel/openbabel-2.3.1.ebuild b/sci-chemist= ry/openbabel/openbabel-2.3.1.ebuild deleted file mode 100644 index 89b1836..0000000 --- a/sci-chemistry/openbabel/openbabel-2.3.1.ebuild +++ /dev/null @@ -1,69 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel/openbabel-2.3= .0.ebuild,v 1.5 2011/05/07 09:18:00 jlec Exp $ - -EAPI=3D"3" - -WX_GTK_VER=3D"2.8" - -inherit cmake-utils eutils wxwidgets - -DESCRIPTION=3D"Interconverts file formats used in molecular modeling" -HOMEPAGE=3D"http://openbabel.sourceforge.net/" -SRC_URI=3D"mirror://sourceforge/openbabel/${P}.tar.gz" - -KEYWORDS=3D"~amd64 ~x86 ~amd64-linux ~x86-linux" -SLOT=3D"0" -LICENSE=3D"GPL-2" -IUSE=3D"doc perl python wxwidgets" - -RDEPEND=3D" - dev-cpp/eigen:2 - dev-libs/libxml2:2 - !sci-chemistry/babel - sci-libs/inchi - sys-libs/zlib - wxwidgets? ( x11-libs/wxGTK:2.8[X] )" -DEPEND=3D"${RDEPEND} - >=3Ddev-util/cmake-2.4.8" -PDEPEND=3D" - perl? ( sci-chemistry/openbabel-perl ) - python? ( sci-chemistry/openbabel-python )" - -DOCS=3D"AUTHORS ChangeLog NEWS README THANKS doc/*.inc doc/README* doc/*= .mol2" - -src_prepare() { - epatch \ - "${FILESDIR}"/${PN}-2.3.0-test_lib_path.patch -} - -src_configure() { - local mycmakeargs=3D"" - mycmakeargs=3D"${mycmakeargs} - -DOPENBABEL_USE_SYSTEM_INCHI=3DON - $(cmake-utils_use wxwidgets BUILD_GUI)" - - cmake-utils_src_configure -} - -src_install() { - dohtml doc/{*.html,*.png} || die - if use doc ; then - insinto /usr/share/doc/${PF}/API/html - doins doc/API/html/* || die - fi - cmake-utils_src_install -} - -src_test() { - local mycmakeargs=3D"" - mycmakeargs=3D"${mycmakeargs} - -DOPENBABEL_USE_SYSTEM_INCHI=3DON - -DPYTHON_EXECUTABLE=3Dfalse - $(cmake-utils_use wxwidgets BUILD_GUI) - $(cmake-utils_use_enable test TESTS)" - - cmake-utils_src_configure - cmake-utils_src_compile - cmake-utils_src_test -}