* [gentoo-commits] proj/sci:master commit in: sci-chemistry/openbabel/files/, sci-chemistry/openbabel-python/files/, ...
@ 2012-03-04 10:31 Justin Lecher
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From: Justin Lecher @ 2012-03-04 10:31 UTC (permalink / raw
To: gentoo-commits
commit: e30b4c139db3db8f0fc6d3086d21896f12238960
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Mar 4 10:31:15 2012 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Mar 4 10:31:15 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e30b4c13
Moved to tree
---
sci-chemistry/openbabel-perl/ChangeLog | 10 ---
.../files/openbabel-perl-2.3.1-makefile.patch | 9 ---
sci-chemistry/openbabel-perl/metadata.xml | 12 ----
.../openbabel-perl/openbabel-perl-2.3.1.ebuild | 69 --------------------
sci-chemistry/openbabel-python/ChangeLog | 10 ---
.../openbabel-python-2.3.1-system_openbabel.patch | 15 ----
sci-chemistry/openbabel-python/metadata.xml | 12 ----
.../openbabel-python/openbabel-python-2.3.1.ebuild | 53 ---------------
sci-chemistry/openbabel/ChangeLog | 11 ---
.../files/openbabel-2.3.0-test_lib_path.patch | 12 ----
sci-chemistry/openbabel/metadata.xml | 14 ----
sci-chemistry/openbabel/openbabel-2.3.1.ebuild | 69 --------------------
12 files changed, 0 insertions(+), 296 deletions(-)
diff --git a/sci-chemistry/openbabel-perl/ChangeLog b/sci-chemistry/openbabel-perl/ChangeLog
deleted file mode 100644
index b6a2102..0000000
--- a/sci-chemistry/openbabel-perl/ChangeLog
+++ /dev/null
@@ -1,10 +0,0 @@
-# ChangeLog for sci-chemistry/openbabel-perl
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*openbabel-perl-2.3.1 (10 Nov 2011)
-
- 10 Nov 2011; Reinis Danne <rei4dan@gmail.com> +openbabel-perl-2.3.1.ebuild,
- +files/openbabel-perl-2.3.1-makefile.patch, +metadata.xml:
- Version bump to 2.3.1
-
diff --git a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.1-makefile.patch b/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.1-makefile.patch
deleted file mode 100644
index 88248b4..0000000
--- a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.1-makefile.patch
+++ /dev/null
@@ -1,9 +0,0 @@
---- scripts/perl/Makefile.PL
-+++ scripts/perl/Makefile.PL
-@@ -37,5 +37,6 @@ 'LDFROM' => $ldfrom,
- 'CC' => $CC,
- 'LD' => '$(CC)',
- 'INC' => '-I../../include -I'.$cmakesrcdir.'/include',
-+ 'DESTDIR' => @ENV{"D"},
- 'OBJECT' => 'openbabel-perl.o'
- );
diff --git a/sci-chemistry/openbabel-perl/metadata.xml b/sci-chemistry/openbabel-perl/metadata.xml
deleted file mode 100644
index 433cfe8..0000000
--- a/sci-chemistry/openbabel-perl/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <herd>sci-chemistry</herd>
- <longdescription>
- OpenBabel is a chemical toolbox designed to speak the many languages of
- chemical data. It's an open, collaborative project allowing anyone to
- search, convert, analyze, or store data from molecular modeling, chemistry,
- solid-state materials, biochemistry, or related areas. This package enables
- to access OpenBabel library from Python programs.
- </longdescription>
-</pkgmetadata>
diff --git a/sci-chemistry/openbabel-perl/openbabel-perl-2.3.1.ebuild b/sci-chemistry/openbabel-perl/openbabel-perl-2.3.1.ebuild
deleted file mode 100644
index 96f267f..0000000
--- a/sci-chemistry/openbabel-perl/openbabel-perl-2.3.1.ebuild
+++ /dev/null
@@ -1,69 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel-perl/openbabel-perl-2.3.0.ebuild,v 1.3 2011/03/29 06:00:42 jlec Exp $
-
-EAPI="3"
-
-inherit cmake-utils eutils perl-module
-
-DESCRIPTION="Perl bindings for OpenBabel"
-HOMEPAGE="http://openbabel.sourceforge.net/"
-SRC_URI="mirror://sourceforge/openbabel/openbabel-${PV}.tar.gz"
-
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-SLOT="0"
-LICENSE="GPL-2"
-IUSE=""
-
-RDEPEND="
- dev-lang/perl
- ~sci-chemistry/openbabel-${PV}"
-DEPEND="${RDEPEND}
- >=dev-lang/swig-2
- dev-util/cmake"
-
-S="${WORKDIR}/openbabel-${PV}"
-
-src_prepare() {
- epatch \
- "${FILESDIR}/${P}-makefile.patch"
-}
-
-src_configure() {
- local mycmakeargs="-DPERL_BINDINGS=ON"
- mycmakeargs="${mycmakeargs}
- -DRUN_SWIG=ON"
- cmake-utils_src_configure
-}
-
-src_compile() {
- cd "${WORKDIR}/${P}_build/scripts"
- perl-module_src_prep
- perl-module_src_compile
-}
-
-src_test() {
- cd "${WORKDIR}/${P}_build/scripts"
- emake test || die "make test failed"
-}
-
-src_install() {
- cd "${WORKDIR}/${P}_build/scripts/perl"
- perl-module_src_install
-}
-
-pkg_preinst() {
- perl-module_pkg_preinst
-}
-
-pkg_postinst() {
- perl-module_pkg_postinst
-}
-
-pkg_prerm() {
- perl-module_pkg_prerm
-}
-
-pkg_postrm() {
- perl-module_pkg_postrm
-}
diff --git a/sci-chemistry/openbabel-python/ChangeLog b/sci-chemistry/openbabel-python/ChangeLog
deleted file mode 100644
index 0378f55..0000000
--- a/sci-chemistry/openbabel-python/ChangeLog
+++ /dev/null
@@ -1,10 +0,0 @@
-# ChangeLog for sci-chemistry/openbabel-python
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*openbabel-python-2.3.1 (10 Nov 2011)
-
- 10 Nov 2011; Reinis Danne <rei4dan@gmail.com> +openbabel-python-2.3.1.ebuild,
- +files/openbabel-python-2.3.1-system_openbabel.patch, +metadata.xml:
- Version bump to 2.3.1
-
diff --git a/sci-chemistry/openbabel-python/files/openbabel-python-2.3.1-system_openbabel.patch b/sci-chemistry/openbabel-python/files/openbabel-python-2.3.1-system_openbabel.patch
deleted file mode 100644
index 6420bba..0000000
--- a/sci-chemistry/openbabel-python/files/openbabel-python-2.3.1-system_openbabel.patch
+++ /dev/null
@@ -1,15 +0,0 @@
---- scripts/python/setup.py
-+++ scripts/python/setup.py
-@@ -15,11 +15,7 @@
-
- obExtension = Extension('_openbabel',
- [os.path.join(srcdir, "openbabel-python.cpp")],
-- include_dirs=[os.path.join(srcdir, "..", "..", "include"),
-- os.path.join("..", "include")],
-- library_dirs=[os.path.join(srcdir, "..", "..", "lib"),
-- os.path.join(srcdir, "..", "..", "lib64"),
-- os.path.join("..", "lib")],
-+ include_dirs=[os.path.join("/usr", "include", "openbabel-2.0")],
- libraries=['openbabel']
- )
-
diff --git a/sci-chemistry/openbabel-python/metadata.xml b/sci-chemistry/openbabel-python/metadata.xml
deleted file mode 100644
index 433cfe8..0000000
--- a/sci-chemistry/openbabel-python/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <herd>sci-chemistry</herd>
- <longdescription>
- OpenBabel is a chemical toolbox designed to speak the many languages of
- chemical data. It's an open, collaborative project allowing anyone to
- search, convert, analyze, or store data from molecular modeling, chemistry,
- solid-state materials, biochemistry, or related areas. This package enables
- to access OpenBabel library from Python programs.
- </longdescription>
-</pkgmetadata>
diff --git a/sci-chemistry/openbabel-python/openbabel-python-2.3.1.ebuild b/sci-chemistry/openbabel-python/openbabel-python-2.3.1.ebuild
deleted file mode 100644
index 0da030f..0000000
--- a/sci-chemistry/openbabel-python/openbabel-python-2.3.1.ebuild
+++ /dev/null
@@ -1,53 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel-python/openbabel-python-2.3.0.ebuild,v 1.7 2011/09/14 05:06:41 jlec Exp $
-
-EAPI="3"
-
-PYTHON_DEPEND="2"
-SUPPORT_PYTHON_ABIS="1"
-RESTRICT_PYTHON_ABIS="*-jython"
-PYTHON_MODNAME="openbabel.py pybel.py"
-
-inherit distutils eutils flag-o-matic
-
-DESCRIPTION="Python bindings for OpenBabel (including Pybel)"
-HOMEPAGE="http://openbabel.sourceforge.net/"
-SRC_URI="mirror://sourceforge/openbabel/openbabel-${PV}.tar.gz"
-
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-SLOT="0"
-LICENSE="GPL-2"
-IUSE=""
-
-RDEPEND="
- dev-cpp/eigen:2
- dev-libs/libxml2:2
- !sci-chemistry/babel
- ~sci-chemistry/openbabel-${PV}
- sys-libs/zlib"
-DEPEND="${RDEPEND}
- >=dev-lang/swig-2"
-
-S="${WORKDIR}"/openbabel-${PV}
-
-DISTUTILS_SETUP_FILES=("scripts|python/setup.py")
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${P}-system_openbabel.patch
-
- sed \
- -e "s:/usr:${EPREFIX}/usr:g" \
- -i ./scripts/python/setup.py || die
-
- swig -python -c++ -small -O -templatereduce -naturalvar \
- -I"${EPREFIX}/usr/include/openbabel-2.0" \
- -o scripts/python/openbabel-python.cpp \
- -DHAVE_EIGEN2 \
- -outdir scripts/python \
- scripts/openbabel-python.i \
- || die "Regeneration of openbabel-python.cpp failed"
-
- append-cxxflags "$(pkg-config --cflags-only-I eigen2)"
-}
diff --git a/sci-chemistry/openbabel/ChangeLog b/sci-chemistry/openbabel/ChangeLog
deleted file mode 100644
index d05cfda..0000000
--- a/sci-chemistry/openbabel/ChangeLog
+++ /dev/null
@@ -1,11 +0,0 @@
-# ChangeLog for sci-chemistry/openbabel
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*openbabel-2.3.1 (10 Nov 2011)
-
- 10 Nov 2011; Reinis Danne <rei4dan@gmail.com>
- +files/openbabel-2.3.0-test_lib_path.patch, +openbabel-2.3.1.ebuild,
- +metadata.xml:
- Version bump to 2.3.1
-
diff --git a/sci-chemistry/openbabel/files/openbabel-2.3.0-test_lib_path.patch b/sci-chemistry/openbabel/files/openbabel-2.3.0-test_lib_path.patch
deleted file mode 100644
index 014da6b..0000000
--- a/sci-chemistry/openbabel/files/openbabel-2.3.0-test_lib_path.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff -ru old/openbabel-2.3.0/test/CMakeLists.txt new/openbabel-2.3.0/test/CMakeLists.txt
---- old/openbabel-2.3.0/test/CMakeLists.txt 2010-10-26 17:39:01.000000000 +0300
-+++ new/openbabel-2.3.0/test/CMakeLists.txt 2010-11-14 18:13:32.000000000 +0200
-@@ -2,7 +2,7 @@
- add_definitions(-DTESTDATADIR="\\"${CMAKE_SOURCE_DIR}/test/files/\\"")
-
- # define FORMATDIR for location of format plugin binaries
--add_definitions(-DFORMATDIR="\\"${openbabel_BINARY_DIR}/lib/\\"")
-+add_definitions(-DFORMATDIR="\\"${openbabel_BINARY_DIR}/lib${LIB_SUFFIX}/\\"")
-
- ###########################################################
- # new tests using obtest.h
diff --git a/sci-chemistry/openbabel/metadata.xml b/sci-chemistry/openbabel/metadata.xml
deleted file mode 100644
index 7c0c529..0000000
--- a/sci-chemistry/openbabel/metadata.xml
+++ /dev/null
@@ -1,14 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <herd>sci-chemistry</herd>
- <longdescription>
- Open Babel is a chemical toolbox designed to speak the many languages of
- chemical data. It's an open, collaborative project allowing anyone to
- search, convert, analyze, or store data from molecular modeling, chemistry,
- solid-state materials, biochemistry, or related areas.
- </longdescription>
- <use>
- <flag name="wxwidgets">Build GUI.</flag>
- </use>
-</pkgmetadata>
diff --git a/sci-chemistry/openbabel/openbabel-2.3.1.ebuild b/sci-chemistry/openbabel/openbabel-2.3.1.ebuild
deleted file mode 100644
index 89b1836..0000000
--- a/sci-chemistry/openbabel/openbabel-2.3.1.ebuild
+++ /dev/null
@@ -1,69 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel/openbabel-2.3.0.ebuild,v 1.5 2011/05/07 09:18:00 jlec Exp $
-
-EAPI="3"
-
-WX_GTK_VER="2.8"
-
-inherit cmake-utils eutils wxwidgets
-
-DESCRIPTION="Interconverts file formats used in molecular modeling"
-HOMEPAGE="http://openbabel.sourceforge.net/"
-SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz"
-
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-SLOT="0"
-LICENSE="GPL-2"
-IUSE="doc perl python wxwidgets"
-
-RDEPEND="
- dev-cpp/eigen:2
- dev-libs/libxml2:2
- !sci-chemistry/babel
- sci-libs/inchi
- sys-libs/zlib
- wxwidgets? ( x11-libs/wxGTK:2.8[X] )"
-DEPEND="${RDEPEND}
- >=dev-util/cmake-2.4.8"
-PDEPEND="
- perl? ( sci-chemistry/openbabel-perl )
- python? ( sci-chemistry/openbabel-python )"
-
-DOCS="AUTHORS ChangeLog NEWS README THANKS doc/*.inc doc/README* doc/*.mol2"
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${PN}-2.3.0-test_lib_path.patch
-}
-
-src_configure() {
- local mycmakeargs=""
- mycmakeargs="${mycmakeargs}
- -DOPENBABEL_USE_SYSTEM_INCHI=ON
- $(cmake-utils_use wxwidgets BUILD_GUI)"
-
- cmake-utils_src_configure
-}
-
-src_install() {
- dohtml doc/{*.html,*.png} || die
- if use doc ; then
- insinto /usr/share/doc/${PF}/API/html
- doins doc/API/html/* || die
- fi
- cmake-utils_src_install
-}
-
-src_test() {
- local mycmakeargs=""
- mycmakeargs="${mycmakeargs}
- -DOPENBABEL_USE_SYSTEM_INCHI=ON
- -DPYTHON_EXECUTABLE=false
- $(cmake-utils_use wxwidgets BUILD_GUI)
- $(cmake-utils_use_enable test TESTS)"
-
- cmake-utils_src_configure
- cmake-utils_src_compile
- cmake-utils_src_test
-}
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