From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/gbrowse/
Date: Tue, 28 Feb 2012 16:25:49 +0000 (UTC) [thread overview]
Message-ID: <1330446327.583d5ee61844e8de863d6133fe83c2fbb00b4bfc.mmokrejs@gentoo> (raw)
commit: 583d5ee61844e8de863d6133fe83c2fbb00b4bfc
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Feb 28 16:25:27 2012 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Feb 28 16:25:27 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=583d5ee6
sci-biology/gbrowse-2.48: added dependency on <=sci-biology/primer3-2, per http://generic-model-organism-system-database.450254.n5.nabble.com/PrimerDesigner-working-in-2-40-tp4724773p5479669.html
(Portage version: 2.1.10.49/git/Linux x86_64, unsigned Manifest commit)
---
sci-biology/gbrowse/ChangeLog | 8 ++++++++
sci-biology/gbrowse/gbrowse-2.45.ebuild | 2 +-
.../{gbrowse-2.45.ebuild => gbrowse-2.48.ebuild} | 3 ++-
3 files changed, 11 insertions(+), 2 deletions(-)
diff --git a/sci-biology/gbrowse/ChangeLog b/sci-biology/gbrowse/ChangeLog
index 41e2334..b0949c5 100644
--- a/sci-biology/gbrowse/ChangeLog
+++ b/sci-biology/gbrowse/ChangeLog
@@ -2,6 +2,14 @@
# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/generic-genome-browser/ChangeLog,v 1.10 2007/07/29 17:07:38 phreak Exp $
+*gbrowse-2.48 (28 Feb 2012)
+
+ 28 Feb 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ gbrowse-2.45.ebuild, +gbrowse-2.48.ebuild:
+ added dependency on <=sci-biology/primer3-2, per
+ http://generic-model-organism-system-database.450254.n5.nabble.com/PrimerDesi
+ gner-working-in-2-40-tp4724773p5479669.html
+
*gbrowse-2.45 (17 Jan 2012)
17 Jan 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
diff --git a/sci-biology/gbrowse/gbrowse-2.45.ebuild b/sci-biology/gbrowse/gbrowse-2.45.ebuild
index f914844..4b3f3b3 100644
--- a/sci-biology/gbrowse/gbrowse-2.45.ebuild
+++ b/sci-biology/gbrowse/gbrowse-2.45.ebuild
@@ -44,7 +44,7 @@ DEPEND="!!sci-biology/GBrowse
virtual/perl-Digest-MD5
>=dev-perl/CGI-Session-4.03
dev-perl/Statistics-Descriptive
- >=dev-perl/Bio-Graphics-1.97
+ >=dev-perl/Bio-Graphics-2.26
>=dev-perl/JSON-2.510.0
dev-perl/TermReadKey
dev-perl/libwww-perl
diff --git a/sci-biology/gbrowse/gbrowse-2.45.ebuild b/sci-biology/gbrowse/gbrowse-2.48.ebuild
similarity index 99%
copy from sci-biology/gbrowse/gbrowse-2.45.ebuild
copy to sci-biology/gbrowse/gbrowse-2.48.ebuild
index f914844..754cc9e 100644
--- a/sci-biology/gbrowse/gbrowse-2.45.ebuild
+++ b/sci-biology/gbrowse/gbrowse-2.48.ebuild
@@ -44,7 +44,7 @@ DEPEND="!!sci-biology/GBrowse
virtual/perl-Digest-MD5
>=dev-perl/CGI-Session-4.03
dev-perl/Statistics-Descriptive
- >=dev-perl/Bio-Graphics-1.97
+ >=dev-perl/Bio-Graphics-2.26
>=dev-perl/JSON-2.510.0
dev-perl/TermReadKey
dev-perl/libwww-perl
@@ -86,6 +86,7 @@ RDEPEND="${DEPEND}
postgres? ( >=dev-perl/Bio-DB-Das-Chado-0.32 )
>=dev-perl/Bio-SamTools-1.29
>=dev-perl/Bio-BigFile-1.06
+ <=sci-biology/primer3-2
)"
src_prepare() {
next reply other threads:[~2012-02-28 16:26 UTC|newest]
Thread overview: 9+ messages / expand[flat|nested] mbox.gz Atom feed top
2012-02-28 16:25 Martin Mokrejs [this message]
-- strict thread matches above, loose matches on Subject: below --
2014-11-13 13:00 [gentoo-commits] proj/sci:master commit in: sci-biology/gbrowse/ Justin Lecher
2014-09-24 6:45 Justin Lecher
2012-05-22 19:43 Justin Lecher
2012-01-17 0:34 Martin Mokrejs
2011-07-30 14:56 Martin Mokrejs
2011-07-08 17:22 Martin Mokrejs
2011-07-08 14:00 Martin Mokrejs
2011-06-25 17:22 Justin Lecher
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=1330446327.583d5ee61844e8de863d6133fe83c2fbb00b4bfc.mmokrejs@gentoo \
--to=mmokrejs@fold.natur.cuni.cz \
--cc=gentoo-commits@lists.gentoo.org \
--cc=gentoo-dev@lists.gentoo.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox