[gentoo-commits] proj/sci:master commit in: eclass/

["Justin Lecher" <jlec@gentoo.org>]

commit:     0ec40849d2201c1d4a15ce8a73b85dc4408bb953
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Mar 10 16:36:05 2011 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Mar 10 16:36:05 2011 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0ec40849

embassy-ng.eclass progressing

---
 eclass/embassy-ng.eclass |   91 ++++++++++++++++++++++++++++++++++++++++------
 1 files changed, 80 insertions(+), 11 deletions(-)

diff --git a/eclass/embassy-ng.eclass b/eclass/embassy-ng.eclass
index ad5e6ae..951e5eb 100644
--- a/eclass/embassy-ng.eclass
+++ b/eclass/embassy-ng.eclass
@@ -8,15 +8,52 @@
 # Author of the next generation eclass
 # Justin Lecher <jlec@gentoo.org>
 
-# @ECLASS: versionator.eclass
+# @ECLASS: embassy-ng.eclass
 # @MAINTAINER:
 # sci-biology@gentoo.org
 # jlec@gentoo.org
-# @BLURB: Use this to easy install EMBASSY programs (EMBOSS add-ons).
-# @DESCRIPTION: The inheriting ebuild should provide a "DESCRIPTION", "KEYWORDS"
-# and, if necessary, add "(R|P)DEPEND"encies. Additionnaly, the inheriting
-# ebuild's name must begin by "embassy-". Also, before inheriting, the ebuild
-# should specify what version of EMBOSS is required by setting EBOV.
+# @BLURB: Use this to easy install EMBOSS and EMBASSY programs (EMBOSS add-ons).
+# @DESCRIPTION:
+# The inheriting ebuild should provide EBOV, EBO_DESCRIPTION and "KEYWORDS",
+# before the inherit line.
+# Additionally "(R|P)DEPEND"encies and other standard ebuild Variables can be set.
+# The inheriting ebuild's name must begin by "embassy-" and must be EAPI=4 conform.
+
+# @ECLASS-VARIABLE: EBOV
+# @DEFAULT_UNSET
+# @REQUIRED
+# @DESCRIPTION:
+# This specifies the minimum Emboss version needed for this package. *DEPEND are set to
+# >=sci-biology/emboss-${EBOV}.
+# This variable must be always set by the ebuild before the inheriting line
+
+# @ECLASS-VARIABLE: EBO_DESCRIPTION
+# @DESCRIPTION:
+# Should be set. Completes the describtion of the embassy module as follows:
+#
+# EMBOSS integrated version of EBO_DESCRIPTION"
+#
+# Defaults to the upstream name of the module.
+
+# @ECLASS-VARIABLE: EBO_PATCH
+# @DEFAULT_UNSET
+# @DESCRIPTION: Specify the patch level of EMBOSS. Only available for the emboss ebuild.
+# The patch wil be fetch from:
+#
+# ftp://emboss.open-bio.org/pub/EMBOSS/fixes/patches/patch-1-${EBO_PATCH}.gz.
+#
+# Embassy package should create one patch package and place it in FILESDIR, e.g.
+# "files/embassy-iprscan-4.3.1-r2.patch". The patch will be automatically used during src_prepare
+
+# @ECLASS-VARIABLE: NO_RECONF
+# @DEFAULT_UNSET
+# @DESCRIPTION:
+# Set this, if you do want to have eautoreconf be run after patching.
+
+# @ECLASS-VARIABLE: EBO_ECONF
+# @DEFAULT_UNSET
+# @DESCRIPTION:
+# Extra config options passed to econf, similar to EXTRA_ECONF.
 
 EAPI="4"
 
@@ -49,7 +86,7 @@ RDEPEND="${DEPEND}"
 if [[ ${PN} == "emboss" ]] ; then
 	DESCRIPTION="The European Molecular Biology Open Software Suite - A sequence analysis package"
 	SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz"
-	[[ -n ${EBO_PATCH} ]] && SRC_URI+=" ftp://${PN}.open-bio.org/pub/EMBOSS/fixes/patches/patch-1-${MY_PATCH}.gz -> ${P}.patch.gz"
+	[[ -n ${EBO_PATCH} ]] && SRC_URI+=" ftp://${PN}.open-bio.org/pub/EMBOSS/fixes/patches/patch-1-${EBO_PATCH}.gz -> ${P}.patch.gz"
 	IUSE+=" minimal"
 	RDEPEND+=" !sys-devel/cons"
 	PDEPEND="
@@ -68,20 +105,52 @@ else
 	# The full name and version of the EMBASSY package (excluding the Gentoo
 	# revision number)
 	EF="$(echo ${EN} | tr "[:lower:]" "[:upper:]")-${PV}"
-
+	EBO_DESCRIPTION=${EBO_DESCRIPTION:=${EN}}
 	DESCRIPTION="EMBOSS integrated version of ${EBO_DESCRIPTION}"
 	SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/${EF}.tar.gz -> embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
-	DEPEND+=" =sci-biology/emboss-${EBOV}*[mysql=,pdf=,png=,postgres=,static-libs=,X=]"
+	DEPEND+=" >=sci-biology/emboss-${EBOV}[mysql=,pdf=,png=,postgres=,static-libs=,X=]"
 
 	S="${WORKDIR}"/${EF}
 fi
 
+# @FUNCTION: embassy-ng_src_prepare
+# @USAGE:
+# @RETURN:
+# @MAINTAINER:
+# @DESCRIPTION:
+# Does three things
+#
+#  1. Patches EMBOSS if EBO_PATCH is set
+#  2. Patches, if "${FILESDIR}"/${PF}.patch is a file
+#  3. runs eautoreconf unless NO_RECONF is set
+#
+
 embassy-ng_src_prepare() {
-	[[ -n ${EBO_PATCH} ]] && epatch "${WORKDIR}"/${P}.patch
+	[[ ${PN} == emboss ]] && [[ -n ${EBO_PATCH} ]] && epatch "${WORKDIR}"/${P}.patch
 	[[ -f "${FILESDIR}"/${PF}.patch ]] && epatch "${FILESDIR}"/${PF}.patch
 	[[ -n ${NO_RECONF} ]] || eautoreconf
 }
 
+# @FUNCTION: embassy-ng_src_prepare
+# @USAGE:
+# @RETURN:
+# @MAINTAINER:
+# @DESCRIPTION:
+# runs econf with following options. Extra things can be passed by setting EBO_ECONF
+#
+#  $(use_with X x)
+#  $(use_with png pngdriver "${EPREFIX}/usr")
+#  $(use_with doc docroot "${EPREFIX}/usr")
+#  $(use_with pdf hpdf "${EPREFIX}/usr")
+#  $(use_with mysql mysql "${EPREFIX}/usr/bin/mysql_config")
+#  $(use_with postgres postgresql "${EPREFIX}/usr/bin/pg_config")
+#  $(use_enable amd64 64)
+#  $(use_enable static-libs static)
+#  --enable-large
+#  --without-java
+#  --enable-systemlibs
+#  ${EBO_ECONF}
+
 embassy-ng_src_configure() {
 	econf \
 		$(use_with X x) \
@@ -92,7 +161,7 @@ embassy-ng_src_configure() {
 		$(use_with postgres postgresql "${EPREFIX}/usr/bin/pg_config") \
 		$(use_enable amd64 64) \
 		$(use_enable static-libs static) \
-		--enable-large
+		--enable-large \
 		--without-java \
 		--enable-systemlibs \
 		${EBO_ECONF}