From: "Alexey Shvetsov" <alexxy@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/MDAnalysis/
Date: Tue, 12 Aug 2025 15:22:09 +0000 (UTC) [thread overview]
Message-ID: <1755012098.be944ba847c0a79d8e858691f84cc7b191c496f2.alexxy@gentoo> (raw)
commit: be944ba847c0a79d8e858691f84cc7b191c496f2
Author: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
AuthorDate: Tue Aug 12 15:21:38 2025 +0000
Commit: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
CommitDate: Tue Aug 12 15:21:38 2025 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=be944ba8
sci-chemistry/MDAnalysis: Fix build with py3.13 and new numpy
Signed-off-by: Alexey Shvetsov <alexxy <AT> gentoo.org>
sci-chemistry/MDAnalysis/MDAnalysis-2.9.0.ebuild | 10 ++++++++++
1 file changed, 10 insertions(+)
diff --git a/sci-chemistry/MDAnalysis/MDAnalysis-2.9.0.ebuild b/sci-chemistry/MDAnalysis/MDAnalysis-2.9.0.ebuild
index bf7d351fee00..9e652df57daf 100644
--- a/sci-chemistry/MDAnalysis/MDAnalysis-2.9.0.ebuild
+++ b/sci-chemistry/MDAnalysis/MDAnalysis-2.9.0.ebuild
@@ -41,3 +41,13 @@ RDEPEND="
BDEPEND="${RDEPEND}"
distutils_enable_tests pytest
+
+src_prepare() {
+ # fix deprecated NPY API
+ sed \
+ -e "s:NPY_IN_ARRAY:NPY_ARRAY_IN_ARRAY:g" \
+ -e "s:NPY_ALIGNED:NPY_ARRAY_ALIGNED:g" \
+ -e "s:NPY_ENSURECOPY:NPY_ARRAY_ENSURECOPY:g" \
+ -i MDAnalysis/lib/src/transformations/transformations.c || die
+ distutils-r1_src_prepare
+}
next reply other threads:[~2025-08-12 15:22 UTC|newest]
Thread overview: 19+ messages / expand[flat|nested] mbox.gz Atom feed top
2025-08-12 15:22 Alexey Shvetsov [this message]
-- strict thread matches above, loose matches on Subject: below --
2025-04-03 18:02 [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/MDAnalysis/ Alexey Shvetsov
2024-06-05 17:27 Alexey Shvetsov
2023-10-14 6:17 Alexey Shvetsov
2023-05-20 11:36 Pacho Ramos
2023-05-20 6:31 Michał Górny
2023-05-20 6:31 Michał Górny
2023-05-02 18:42 Pacho Ramos
2023-03-17 15:29 Michał Górny
2022-12-25 22:15 Alexey Shvetsov
2022-01-13 16:15 Alexey Shvetsov
2021-12-28 14:15 Andrew Ammerlaan
2021-01-18 10:14 David Seifert
2021-01-12 20:25 Pacho Ramos
2019-12-26 20:46 David Seifert
2019-11-17 15:12 Alexey Shvetsov
2018-06-28 12:20 Alexey Shvetsov
2018-05-16 22:57 [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/mdanalysis/ Aaron Bauman
2015-09-01 20:06 Tobias Klausmann
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