From: "Michał Górny" <mgorny@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] repo/gentoo:master commit in: sci-mathematics/petsc/
Date: Thu, 01 May 2025 11:36:57 +0000 (UTC) [thread overview]
Message-ID: <1746099366.ab5ef21e9f750245434d01cd030bf8da41bbfe0d.mgorny@gentoo> (raw)
commit: ab5ef21e9f750245434d01cd030bf8da41bbfe0d
Author: Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Tue Apr 22 11:46:45 2025 +0000
Commit: Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Thu May 1 11:36:06 2025 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ab5ef21e
sci-mathematics/petsc: Remove old
Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>
Part-of: https://github.com/gentoo/gentoo/pull/41697
Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>
sci-mathematics/petsc/Manifest | 3 -
sci-mathematics/petsc/metadata.xml | 1 -
sci-mathematics/petsc/petsc-3.16.0-r2.ebuild | 192 ---------------------------
sci-mathematics/petsc/petsc-3.17.1-r2.ebuild | 190 --------------------------
4 files changed, 386 deletions(-)
diff --git a/sci-mathematics/petsc/Manifest b/sci-mathematics/petsc/Manifest
index 3934ea9f285c..5adb5918f539 100644
--- a/sci-mathematics/petsc/Manifest
+++ b/sci-mathematics/petsc/Manifest
@@ -1,6 +1,3 @@
-DIST petsc-3.16.0-fftw-without-mpi.patch.bz2 5824 BLAKE2B 59615b1bbaf8ca1da92d7d193a45a2dd434f762cd741d711d4f408183a201a276ac3c968a3e7d740d19212120271701bce52bb7b0f4e311268f40915c81f9dcb SHA512 8e07dfe56a9150ce9a3a5ab8012657875ef84e6e7daa60560bbdd9062078c876a826057f3f3eaf1697ce046a82756ee6eb6a8b819eb51245367c9d5c8a72ee8e
-DIST petsc-3.16.0.tar.gz 16748960 BLAKE2B 87f9fdb79a9c44e5f476fa4746ad0cbe72f3eda9f6039f2e4743105626701d7c8d6c010fdb9d89becf8619288d0b7a60c8bc4e2fc0793eac5b39030b02c04fd9 SHA512 5280032fb4ec4d058733788bb0ae674e7400565e204133bd10ed88a2965230ec7adeaca2d498267ce661377ca7e6f9d948992206b1d679587606cb422c004655
-DIST petsc-3.17.1.tar.gz 17082265 BLAKE2B de1bfe45f93e18e32181499e59912df9225c8e24d75f52e641e552fd43e4d5be48d549d284365b173aa93e51603f5b7740eaac0557ff8c7c96b370f4683257f6 SHA512 8c81cc148b1a899a55e54a013d61519ec7b44f98f7ae30c3f8d0e83ba285b23f4b4d9e2cd483c531d337bc41887e4079b727ba73676b1b653910140291e93575
DIST petsc-3.18.2.tar.gz 18409507 BLAKE2B 999d4fc80dedb5f9ce58333b6052b15ff499e3d5e4fee3e37639f5e3d2c5e86b514290d01e75b71795467436254d2cb8b05dac3d6252c80db898010bbed95544 SHA512 a8e9757144a20d61c004f54615821df7f9dbd920af71fea4674eb0fd1bf9f0b50dbc5c89aae285fef35a23daf67ba9647e479a6e92dbcd26e53fd8302735a47b
DIST petsc-3.19.1.tar.gz 16659061 BLAKE2B 8c7b22e5f97756261a5d0e8b707670d55db53e209fd1e116a2adb517d42f5e8bd5ecc911c9e967b88a8dc60a2d872c1d7a279539c65064884b4cfbe856434ad3 SHA512 5b9b71599a95e2d82d18d5313c424a08eead0c10f27f40c82159839ef0fa8aeda88ddea693a12d58b8ac29a41c4138e8188a3c91d6af540196ee3a977cf9539d
DIST petsc-3.19.2.tar.gz 16627765 BLAKE2B 1267db717989c3819f32ac6a62642054af2ac49d9e9276ffd4f0846d73e31ae4a5dcca4ad794b91cdb29463b7ec68040baa4e1cad99aaef8ab910ff7b64d7478 SHA512 f8feeb66fa8bd2406227be0e2cc2946485238362270d40e3f07dc89491177751f6bf680f51b70696bc30b677624c0e525c3fa9784eabdeb2337697ec56f63fc1
diff --git a/sci-mathematics/petsc/metadata.xml b/sci-mathematics/petsc/metadata.xml
index 5d587548e725..f380b0943dce 100644
--- a/sci-mathematics/petsc/metadata.xml
+++ b/sci-mathematics/petsc/metadata.xml
@@ -18,7 +18,6 @@
<flag name="metis">Add support for metis (<pkg>sci-libs/parmetis</pkg>)</flag>
<flag name="mumps">Add support for mumps (<pkg>sci-libs/mumps</pkg>)</flag>
<flag name="scotch">Add support for scotch (<pkg>sci-libs/scotch</pkg>)</flag>
- <flag name="sparse">Use suitesparse (<pkg>sci-libs/suitesparse</pkg>) including cholmod (<pkg>sci-libs/cholmod</pkg>) for sparse factorization</flag>
<flag name="superlu">Use superlu (<pkg>sci-libs/superlu</pkg>) for preconditioning</flag>
</use>
<upstream>
diff --git a/sci-mathematics/petsc/petsc-3.16.0-r2.ebuild b/sci-mathematics/petsc/petsc-3.16.0-r2.ebuild
deleted file mode 100644
index 03c4e3d5a062..000000000000
--- a/sci-mathematics/petsc/petsc-3.16.0-r2.ebuild
+++ /dev/null
@@ -1,192 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_10 )
-
-inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="https://www.mcs.anl.gov/petsc/"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz"
-SRC_URI+=" https://dev.gentoo.org/~sam/distfiles/${CATEGORY}/${PN}/${P}-fftw-without-mpi.patch.bz2"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="afterimage boost complex-scalars cxx debug fftw
- fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X"
-
-# hypre and superlu curretly exclude each other due to missing linking to hypre
-# if both are enabled
-REQUIRED_USE="
- afterimage? ( X )
- complex-scalars? ( !hypre !superlu )
- hdf5? ( mpi )
- hypre? ( cxx mpi !superlu )
- mumps? ( mpi scotch )
- scotch? ( mpi )
- superlu? ( !hypre )
-"
-
-RDEPEND="
- virtual/blas
- virtual/lapack
- afterimage? ( media-libs/libafterimage )
- boost? ( dev-libs/boost )
- fftw? ( sci-libs/fftw:3.0[mpi?] )
- hdf5? ( sci-libs/hdf5:=[mpi?] )
- hypre? ( >=sci-libs/hypre-2.18.0[mpi?] )
- metis? ( >=sci-libs/parmetis-4 )
- mpi? ( virtual/mpi[cxx?,fortran?] )
- mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
- scotch? ( sci-libs/scotch[mpi?] )
- sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
- superlu? ( >=sci-libs/superlu-5 )
- X? ( x11-libs/libX11 )
-"
-
-DEPEND="${RDEPEND}
- ${PYTHON_DEPS}
- virtual/pkgconfig
- dev-build/cmake
- sys-apps/which
-"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch
- "${FILESDIR}"/${P}-fix_sandbox_violation.patch
- "${WORKDIR}"/${P}-fftw-without-mpi.patch
-)
-
-# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
-petsc_enable() {
- use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
-}
-# add external library:
-# petsc_with use_flag libname libdir
-# petsc_with use_flag libname include linking_libs
-petsc_with() {
- local myuse p=${2:-${1}}
- if use ${1}; then
- myuse="--with-${p}=1"
- if [[ $# -ge 4 ]]; then
- myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
- shift 3
- myuse="${myuse} --with-${p}-lib=$@"
- else
- myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
- fi
- else
- myuse="--with-${p}=0"
- fi
- echo ${myuse}
-}
-
-# select between configure options depending on use flag
-petsc_select() {
- use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
-}
-
-src_configure() {
- # bug 548498
- # PETSc runs mpi processes during configure that result in a sandbox
- # violation by trying to open /proc/mtrr rw. This is not easy to
- # mitigate because it happens in libpciaccess.so called by libhwloc.so,
- # which is used by libmpi.so.
- addpredict /proc/mtrr
- # if mpi is built with knem support it needs /dev/knem too
- addpredict /dev/knem
-
- # configureMPITypes with openmpi-2* insists on accessing the scaling
- # governor rw.
- addpredict /sys/devices/system/cpu/
-
- # bug 771711
- # configureMPIEXEC and configureMPITypes access /dev/nvidiactl
- addpredict /dev/nvidiactl
-
- # bug 810841
- addpredict /dev/kfd
-
- local mylang
- local myopt
-
- use cxx && mylang="cxx" || mylang="c"
- use debug && myopt="debug" || myopt="opt"
-
- # environmental variables expected by petsc during build
-
- export PETSC_DIR="${S}"
- export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
-
- if use debug; then
- strip-flags
- filter-flags -O*
- fi
-
- # C Support on CXX builds is enabled if possible i.e. when not using
- # complex scalars (no complex type for both available at the same time)
-
- econf \
- scrollOutput=1 \
- FFLAGS="${FFLAGS} -fPIC" \
- CFLAGS="${CFLAGS} -fPIC" \
- CXXFLAGS="${CXXFLAGS} -fPIC" \
- LDFLAGS="${LDFLAGS}" \
- --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \
- --with-shared-libraries \
- --with-single-library \
- --with-clanguage=${mylang} \
- $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
- --with-petsc-arch=${PETSC_ARCH} \
- --with-precision=double \
- --with-gnu-compilers \
- --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas lapack)" \
- $(petsc_enable debug debugging) \
- $(petsc_enable mpi) \
- $(petsc_select mpi cc mpicc $(tc-getCC)) \
- $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
- $(petsc_enable fortran) \
- $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
- $(petsc_enable mpi mpi-compilers) \
- $(petsc_select complex-scalars scalar-type complex real) \
- --with-windows-graphics=0 \
- --with-matlab=0 \
- --with-cmake:BOOL=1 \
- $(petsc_enable threads pthread) \
- $(petsc_with afterimage afterimage \
- /usr/include/libAfterImage -lAfterImage) \
- $(use_with hdf5) \
- $(petsc_with hypre hypre \
- /usr/include/hypre -lHYPRE) \
- $(use_with sparse suitesparse) \
- $(petsc_with superlu superlu \
- /usr/include/superlu -lsuperlu) \
- $(use_with X x) \
- $(use_with X x11) \
- $(petsc_with scotch ptscotch \
- /usr/include/scotch \
- [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
- $(petsc_with mumps scalapack \
- /usr/include/scalapack -lscalapack) \
- $(petsc_with mumps mumps \
- /usr/include \
- [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
- --with-imagemagick=0 \
- --with-python=0 \
- $(use_with boost) \
- $(use_with fftw)
-}
-
-src_install() {
- emake DESTDIR="${ED}" install
-
- # add PETSC_DIR to environmental variables
- cat >> 99petsc <<- EOF
- PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc
- LDPATH=${EPREFIX}/usr/$(get_libdir)/petsc/lib
- EOF
- doenvd 99petsc
-}
diff --git a/sci-mathematics/petsc/petsc-3.17.1-r2.ebuild b/sci-mathematics/petsc/petsc-3.17.1-r2.ebuild
deleted file mode 100644
index df212d111e62..000000000000
--- a/sci-mathematics/petsc/petsc-3.17.1-r2.ebuild
+++ /dev/null
@@ -1,190 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_10 pypy3 )
-
-inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="https://www.mcs.anl.gov/petsc"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="afterimage boost complex-scalars debug fftw
-fortran hdf5 hypre int64 mpi metis mumps scotch superlu threads X"
-
-# readd sparse when suitesparse-5.6.0 is in tree
-# sparse? ( >=sci-libs/suitesparse-5.6.0 >=sci-libs/cholmod-1.7.0 )
-# $(use_with sparse suitesparse) \
-RDEPEND="
- virtual/blas
- virtual/lapack
-
- afterimage? ( media-libs/libafterimage )
- boost? ( dev-libs/boost )
- fftw? ( sci-libs/fftw:3.0[mpi?] )
- hdf5? ( sci-libs/hdf5:=[mpi?] )
- hypre? ( >=sci-libs/hypre-2.18.0[int64?,mpi?] )
- metis? ( >=sci-libs/parmetis-4 )
- mpi? ( virtual/mpi[fortran?] )
- mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
- scotch? ( sci-libs/scotch[int64?,mpi?] )
- superlu? ( >=sci-libs/superlu-5 )
- X? ( x11-libs/libX11 )
-"
-DEPEND="
- ${RDEPEND}
- ${PYTHON_DEPS}
-"
-BDEPEND="
- dev-build/cmake
- sys-apps/which
- virtual/pkgconfig
-"
-
-# hypre and superlu curretly exclude each other due to missing linking to hypre
-# if both are enabled
-REQUIRED_USE="
- afterimage? ( X )
- complex-scalars? ( !hypre !superlu )
- hdf5? ( mpi )
- hypre? ( mpi !superlu )
- mumps? ( mpi scotch )
- scotch? ( mpi )
- superlu? ( !hypre )
-"
-PATCHES=(
- "${FILESDIR}/${PN}-3.7.0-disable-rpath.patch"
- "${FILESDIR}"/${PN}-3.16.0-fix_sandbox_violation.patch
-)
-
-# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
-petsc_enable() {
- use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
-}
-# add external library:
-# petsc_with use_flag libname libdir
-# petsc_with use_flag libname include linking_libs
-petsc_with() {
- local myuse p=${2:-${1}}
- if use ${1}; then
- myuse="--with-${p}=1"
- if [[ $# -ge 4 ]]; then
- myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
- shift 3
- myuse="${myuse} --with-${p}-lib=$@"
- else
- myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
- fi
- else
- myuse="--with-${p}=0"
- fi
- echo ${myuse}
-}
-
-# select between configure options depending on use flag
-petsc_select() {
- use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
-}
-
-src_configure() {
- # bug 548498
- # PETSc runs mpi processes during configure that result in a sandbox
- # violation by trying to open /proc/mtrr rw. This is not easy to
- # mitigate because it happens in libpciaccess.so called by libhwloc.so,
- # which is used by libmpi.so.
- addpredict /proc/mtrr
- # if mpi is built with knem support it needs /dev/knem too
- addpredict /dev/knem
-
- # configureMPITypes with openmpi-2* insists on accessing the scaling
- # governor rw.
- addpredict /sys/devices/system/cpu/
-
- # bug 771711
- # configureMPIEXEC and configureMPITypes access /dev/nvidiactl
- addpredict /dev/nvidiactl
-
- # bug 810841
- addpredict /dev/kfd
-
- local myopt
-
- use debug && myopt="debug" || myopt="opt"
-
- # environmental variables expected by petsc during build
-
- export PETSC_DIR="${S}"
- export PETSC_ARCH="linux-gnu-c-${myopt}"
-
- if use debug; then
- strip-flags
- filter-flags -O*
- fi
-
- tc-export AR RANLIB
-
- # C Support on CXX builds is enabled if possible i.e. when not using
- # complex scalars (no complex type for both available at the same time)
-
- econf \
- scrollOutput=1 \
- AR="${AR}" \
- CFLAGS="${CFLAGS} -fPIC" \
- CPPFLAGS="${CPPFLAGS}" \
- CXXFLAGS="${CXXFLAGS} -fPIC" \
- CXXOPTFLAGS="${CXXFLAGS} -fPIC" \
- FCFLAGS="${FCFLAGS} -fPIC" \
- FFLAGS="${FFLAGS} -fPIC" \
- LDFLAGS="${LDFLAGS}" \
- MAKEFLAGS="${MAKEFLAGS}" \
- RANLIB="${RANLIB}" \
- --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \
- --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas lapack)" \
- --with-cmake:BOOL=1 \
- --with-gnu-compilers \
- --with-imagemagick=0 \
- --with-matlab=0 \
- --with-petsc-arch="${PETSC_ARCH}" \
- --with-precision=double \
- --with-python=0 \
- --with-shared-libraries \
- --with-single-library \
- --with-windows-graphics=0 \
- $(petsc_enable debug debugging) \
- $(petsc_enable fortran) \
- $(petsc_enable mpi) \
- $(petsc_enable mpi mpi-compilers) \
- $(petsc_enable threads pthread) \
- $(petsc_select complex-scalars scalar-type complex real) \
- $(petsc_select mpi cc mpicc $(tc-getCC)) \
- $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
- $(petsc_with afterimage afterimage /usr/include/libAfterImage -lAfterImage) \
- $(petsc_with hypre hypre /usr/include/hypre -lHYPRE) \
- $(petsc_with superlu superlu /usr/include/superlu -lsuperlu) \
- $(petsc_with scotch ptscotch /usr/include/scotch [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
- $(petsc_with mumps scalapack /usr/include/scalapack -lscalapack) \
- $(petsc_with mumps mumps /usr/include [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
- $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
- $(use int64 && echo "--with-index-size=64") \
- $(use_with boost) \
- $(use_with fftw) \
- $(use_with hdf5) \
- $(use_with X x) \
- $(use_with X x11)
-}
-
-src_install() {
- emake DESTDIR="${ED}" install
-
- # add PETSC_DIR to environmental variables
- cat >> 99petsc <<- EOF
- PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc
- LDPATH=${EPREFIX}/usr/$(get_libdir)/petsc/lib
- EOF
- doenvd 99petsc
-}
next reply other threads:[~2025-05-01 11:37 UTC|newest]
Thread overview: 33+ messages / expand[flat|nested] mbox.gz Atom feed top
2025-05-01 11:36 Michał Górny [this message]
-- strict thread matches above, loose matches on Subject: below --
2025-08-09 17:12 [gentoo-commits] repo/gentoo:master commit in: sci-mathematics/petsc/ Matthias Maier
2025-07-31 23:09 Matthias Maier
2025-07-31 23:09 Matthias Maier
2025-06-28 21:51 Matthias Maier
2025-06-28 21:51 Matthias Maier
2025-06-28 21:51 Matthias Maier
2024-12-12 4:55 Matthias Maier
2024-07-23 3:40 Eli Schwartz
2024-04-23 20:37 Sam James
2024-03-20 6:26 Sam James
2024-03-20 6:26 Sam James
2024-03-20 6:26 Sam James
2024-03-20 6:26 Sam James
2023-08-06 12:13 Matthias Maier
2023-06-19 18:37 Matthias Maier
2023-05-07 18:59 Matthias Maier
2022-12-28 6:48 Matthias Maier
2022-08-26 10:46 Sam James
2022-06-03 3:57 Sam James
2022-06-03 3:15 Sam James
2022-05-26 1:27 Matthias Maier
2022-05-26 1:27 Matthias Maier
2022-01-04 15:17 Andrew Ammerlaan
2021-11-08 12:31 Andrew Ammerlaan
2021-10-17 19:25 Arthur Zamarin
2021-04-17 0:15 Matthias Maier
2021-04-09 18:26 Matthias Maier
2021-04-09 18:26 Matthias Maier
2020-06-27 20:45 Andreas K. Hüttel
2020-05-10 22:02 Matthias Maier
2019-11-14 23:26 Matthias Maier
2019-11-14 6:13 Matthias Maier
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