From: "Pacho Ramos" <pacho@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] repo/gentoo:master commit in: dev-python/mrcfile/files/, dev-python/mrcfile/
Date: Tue, 2 May 2023 19:20:15 +0000 (UTC) [thread overview]
Message-ID: <1683055209.e50f936c3b5f63ad22457240cecf48cfba3c1c28.pacho@gentoo> (raw)
commit: e50f936c3b5f63ad22457240cecf48cfba3c1c28
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Tue May 2 19:18:43 2023 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Tue May 2 19:20:09 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e50f936c
dev-python/mrcfile: Apply Debian patch to allow tests to pass further
Upstream still didn't port the tests to work with latest numpy versions:
https://github.com/ccpem/mrcfile/issues/49
Debian maintainers modified the test meantime to pass until they are properly
fixed upstream.
Bug: https://bugs.gentoo.org/834884
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
.../files/mrcfile-1.4.3-test-assertion-error.patch | 25 ++++++++++++++++++++++
dev-python/mrcfile/mrcfile-1.4.3.ebuild | 5 +++++
2 files changed, 30 insertions(+)
diff --git a/dev-python/mrcfile/files/mrcfile-1.4.3-test-assertion-error.patch b/dev-python/mrcfile/files/mrcfile-1.4.3-test-assertion-error.patch
new file mode 100644
index 000000000000..a68ffa562260
--- /dev/null
+++ b/dev-python/mrcfile/files/mrcfile-1.4.3-test-assertion-error.patch
@@ -0,0 +1,25 @@
+From: Roland Mas <lolando@debian.org>
+Date: Tue, 14 Feb 2023 15:49:05 +0100
+Subject: Comment out a failing test
+
+---
+ tests/test_mrcobject.py | 6 +++++-
+ 1 file changed, 5 insertions(+), 1 deletion(-)
+
+diff --git a/tests/test_mrcobject.py b/tests/test_mrcobject.py
+index 276e9af..95b5591 100644
+--- a/tests/test_mrcobject.py
++++ b/tests/test_mrcobject.py
+@@ -338,7 +338,11 @@ class MrcObjectTest(AssertRaisesRegexMixin, unittest.TestCase):
+ def test_data_is_not_copied_unnecessarily(self):
+ data = np.arange(6, dtype=np.int16).reshape(1, 2, 3)
+ self.mrcobject.set_data(data)
+- assert self.mrcobject.data is data
++ # Identity assertion fails with python3-numpy 1.24.2, so
++ # replace with an equality assertion assert
++ # This should be reverted eventually
++ # self.mrcobject.data is data
++ assert np.array_equal(self.mrcobject.data, data)
+
+ def test_header_byte_order_is_unchanged_by_data_with_native_order(self):
+ data = np.arange(6, dtype=np.float32).reshape(3, 2)
diff --git a/dev-python/mrcfile/mrcfile-1.4.3.ebuild b/dev-python/mrcfile/mrcfile-1.4.3.ebuild
index 48c609b6c9c9..527f6481961d 100644
--- a/dev-python/mrcfile/mrcfile-1.4.3.ebuild
+++ b/dev-python/mrcfile/mrcfile-1.4.3.ebuild
@@ -27,3 +27,8 @@ RDEPEND="
"
distutils_enable_tests unittest
+
+PATCHES=(
+ # https://github.com/ccpem/mrcfile/issues/49
+ "${FILESDIR}/${P}-test-assertion-error.patch"
+)
reply other threads:[~2023-05-02 19:20 UTC|newest]
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