From: "Andrew Ammerlaan" <andrewammerlaan@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/augustus/
Date: Thu, 27 Jan 2022 19:08:40 +0000 (UTC) [thread overview]
Message-ID: <1643310516.aea4f8147ac23b904f17d3890b398d5fb30c9eee.andrewammerlaan@gentoo> (raw)
commit: aea4f8147ac23b904f17d3890b398d5fb30c9eee
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Thu Jan 27 19:08:10 2022 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Thu Jan 27 19:08:36 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=aea4f814
sci-biology/augustus: add version 3.4.0
Closes: https://bugs.gentoo.org/515996
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/augustus/Manifest | 1 +
sci-biology/augustus/augustus-3.4.0.ebuild | 47 ++++++++++++++++++++++++++++++
2 files changed, 48 insertions(+)
diff --git a/sci-biology/augustus/Manifest b/sci-biology/augustus/Manifest
index 7d0b1e3689b4..7ddb67b5c888 100644
--- a/sci-biology/augustus/Manifest
+++ b/sci-biology/augustus/Manifest
@@ -1 +1,2 @@
+DIST augustus-3.4.0.tar.gz 221652100 BLAKE2B dfc8c98107f5a955f688f3d2976ca936faf2ef7004095f6b9d7c1902a36ca5d3c9aef59cab1b82b56cd5c2abc7b67195c5030111ed68557d53128814b1bf6bab SHA512 ca1df1016589f55527a883429edd5024cbc32c1b32036c81f9df5e0967a7d194f5b7a82109e924f380627427d9731caa478e63cad8cd804c01521aed76d8c4a6
DIST augustus.2.5.5.tar.gz 70826249 BLAKE2B 3f3f1537c5c614f00298e1835eeb7bbe968987c3e0dee13299e1e26b4abf198d8635a93121b11722d2c90b63ff54cf153c72716d01c3ca033481bb54357b7bcf SHA512 33eb05d5c90200d2fc17026743d3a25e73aa3e217b8546f0bed4c94bcb460597d853377a67896e52e45ead5d736d13ed3b2c91b31fed8216da2920c825e8c20f
diff --git a/sci-biology/augustus/augustus-3.4.0.ebuild b/sci-biology/augustus/augustus-3.4.0.ebuild
new file mode 100644
index 000000000000..0608d11dee6c
--- /dev/null
+++ b/sci-biology/augustus/augustus-3.4.0.ebuild
@@ -0,0 +1,47 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DOCS_BUILDER="doxygen"
+DOCS_CONFIG_NAME="doxygen.conf"
+inherit docs
+
+DESCRIPTION="Eukaryotic gene predictor"
+HOMEPAGE="https://bioinf.uni-greifswald.de/augustus/"
+SRC_URI="https://github.com/Gaius-Augustus/Augustus/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
+S="${WORKDIR}/${P^}"
+
+LICENSE="Artistic"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+RDEPEND="
+ dev-db/sqlite:3
+ dev-db/mysql++
+ dev-db/mysql-connector-c
+ dev-libs/boost:=
+ sci-biology/bamtools
+ sci-libs/gsl
+ sci-libs/htslib
+ sci-libs/suitesparse
+ sci-mathematics/lpsolve
+ sys-libs/zlib
+"
+DEPEND="${RDEPEND}"
+
+src_compile() {
+ default
+ docs_compile
+}
+
+src_install() {
+ einstalldocs
+ # from upstream Makefile install:
+ dodir "opt/${P}"
+ cp -a config bin scripts "${ED}/opt/${P}" || die
+ local file
+ for file in bin/*; do
+ dosym "../${P}/${file}" "/opt/${file}"
+ done
+}
next reply other threads:[~2022-01-27 19:08 UTC|newest]
Thread overview: 10+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-01-27 19:08 Andrew Ammerlaan [this message]
-- strict thread matches above, loose matches on Subject: below --
2025-02-11 1:38 [gentoo-commits] repo/gentoo:master commit in: sci-biology/augustus/ Sam James
2025-02-11 1:38 Sam James
2023-02-06 17:44 Sam James
2023-02-04 17:26 Sam James
2023-02-04 17:26 Sam James
2022-09-03 22:09 Sam James
2022-09-03 22:09 Sam James
2022-01-28 21:49 Andrew Ammerlaan
2019-12-10 23:49 David Seifert
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