From: "Conrad Kostecki" <conikost@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] repo/gentoo:master commit in: sci-libs/netcdf/files/
Date: Sat, 27 Feb 2021 15:38:07 +0000 (UTC) [thread overview]
Message-ID: <1614440178.6552a105bd9efbcd159a05f851a8417ee69a8646.conikost@gentoo> (raw)
commit: 6552a105bd9efbcd159a05f851a8417ee69a8646
Author: Michael Mair-Keimberger <mmk <AT> levelnine <DOT> at>
AuthorDate: Fri Feb 26 16:52:32 2021 +0000
Commit: Conrad Kostecki <conikost <AT> gentoo <DOT> org>
CommitDate: Sat Feb 27 15:36:18 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6552a105
sci-libs/netcdf: remove unused patch
Closes: https://github.com/gentoo/gentoo/pull/19672
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Michael Mair-Keimberger <mmk <AT> levelnine.at>
Signed-off-by: Conrad Kostecki <conikost <AT> gentoo.org>
.../files/netcdf-4.3.2-HDF5-1.8.13+-compat.patch | 145 ---------------------
1 file changed, 145 deletions(-)
diff --git a/sci-libs/netcdf/files/netcdf-4.3.2-HDF5-1.8.13+-compat.patch b/sci-libs/netcdf/files/netcdf-4.3.2-HDF5-1.8.13+-compat.patch
deleted file mode 100644
index 783a5b06e99..00000000000
--- a/sci-libs/netcdf/files/netcdf-4.3.2-HDF5-1.8.13+-compat.patch
+++ /dev/null
@@ -1,145 +0,0 @@
-From 435d8a03ed28bb5ad63aff12cbc6ab91531b6bc8 Mon Sep 17 00:00:00 2001
-From: Quincey Koziol <quincey@koziol.cc>
-Date: Wed, 7 May 2014 08:45:15 -0500
-Subject: [PATCH] Account for the HDF5 library not having the MPI-POSIX VFD
- configured in.
-
----
- RELEASE_NOTES.md | 2 ++
- libsrc4/nc4file.c | 40 ++++++++++++++++++++++++++++++++++++++++
- nc_test4/tst_nc4perf.c | 5 +++++
- nc_test4/tst_parallel3.c | 5 +++++
- 4 files changed, 52 insertions(+)
-
-diff --git a/RELEASE_NOTES.md b/RELEASE_NOTES.md
-index 27f228c..1a69d17 100644
---- a/RELEASE_NOTES.md
-+++ b/RELEASE_NOTES.md
-@@ -9,6 +9,8 @@ This file contains a high-level description of this package's evolution. Release
-
- ### 4.3.3-rc1 Released TBD
-
-+* When the NC_MPIPOSIX flag is given for parallel I/O access and the HDF5 library does not have the MPI-POSIX VFD configured in, the NC_MPIPOSIX flag is transparently aliased to the NC_MPIIO flag within the netCDF-4 library.
-+
- ## 4.3.2 Released 2014-04-23
-
- * As part of an ongoing project, the Doxygen-generated netcdf documentation has been reorganized. The goal is to make the documentation easier to parse, and to eliminate redundant material. This project is ongoing.
-diff --git a/libsrc4/nc4file.c b/libsrc4/nc4file.c
-index ec3bb0c..5c957be 100644
---- a/libsrc4/nc4file.c
-+++ b/libsrc4/nc4file.c
-@@ -308,12 +308,21 @@ nc4_create_file(const char *path, int cmode, MPI_Comm comm, MPI_Info info,
- if (H5Pset_fapl_mpio(fapl_id, comm, info) < 0)
- BAIL(NC_EPARINIT);
- }
-+#ifdef USE_PARALLEL_POSIX
- else /* MPI/POSIX */
- {
- LOG((4, "creating parallel file with MPI/posix"));
- if (H5Pset_fapl_mpiposix(fapl_id, comm, 0) < 0)
- BAIL(NC_EPARINIT);
- }
-+#else /* USE_PARALLEL_POSIX */
-+ /* Should not happen! Code in NC4_create/NC4_open should alias the
-+ * NC_MPIPOSIX flag to NC_MPIIO, if the MPI-POSIX VFD is not
-+ * available in HDF5. -QAK
-+ */
-+ else /* MPI/POSIX */
-+ BAIL(NC_EPARINIT);
-+#endif /* USE_PARALLEL_POSIX */
-
- /* Keep copies of the MPI Comm & Info objects */
- if (MPI_SUCCESS != MPI_Comm_dup(comm, &nc4_info->comm))
-@@ -465,6 +474,17 @@ NC4_create(const char* path, int cmode, size_t initialsz, int basepe,
- )
- return NC_EINVAL;
-
-+#ifndef USE_PARALLEL_POSIX
-+/* If the HDF5 library has been compiled without the MPI-POSIX VFD, alias
-+ * the NC_MPIPOSIX flag to NC_MPIIO. -QAK
-+ */
-+ if(cmode & NC_MPIPOSIX)
-+ {
-+ cmode &= ~NC_MPIPOSIX;
-+ cmode |= NC_MPIIO;
-+ }
-+#endif /* USE_PARALLEL_POSIX */
-+
- cmode |= NC_NETCDF4;
-
- /* Apply default create format. */
-@@ -2168,12 +2188,21 @@ nc4_open_file(const char *path, int mode, MPI_Comm comm,
- if (H5Pset_fapl_mpio(fapl_id, comm, info) < 0)
- BAIL(NC_EPARINIT);
- }
-+#ifdef USE_PARALLEL_POSIX
- else /* MPI/POSIX */
- {
- LOG((4, "opening parallel file with MPI/posix"));
- if (H5Pset_fapl_mpiposix(fapl_id, comm, 0) < 0)
- BAIL(NC_EPARINIT);
- }
-+#else /* USE_PARALLEL_POSIX */
-+ /* Should not happen! Code in NC4_create/NC4_open should alias the
-+ * NC_MPIPOSIX flag to NC_MPIIO, if the MPI-POSIX VFD is not
-+ * available in HDF5. -QAK
-+ */
-+ else /* MPI/POSIX */
-+ BAIL(NC_EPARINIT);
-+#endif /* USE_PARALLEL_POSIX */
-
- /* Keep copies of the MPI Comm & Info objects */
- if (MPI_SUCCESS != MPI_Comm_dup(comm, &nc4_info->comm))
-@@ -2640,6 +2669,17 @@ NC4_open(const char *path, int mode, int basepe, size_t *chunksizehintp,
- (mode & NC_MPIIO && mode & NC_MPIPOSIX))
- return NC_EINVAL;
-
-+#ifndef USE_PARALLEL_POSIX
-+/* If the HDF5 library has been compiled without the MPI-POSIX VFD, alias
-+ * the NC_MPIPOSIX flag to NC_MPIIO. -QAK
-+ */
-+ if(mode & NC_MPIPOSIX)
-+ {
-+ mode &= ~NC_MPIPOSIX;
-+ mode |= NC_MPIIO;
-+ }
-+#endif /* USE_PARALLEL_POSIX */
-+
-
- /* Depending on the type of file, open it. */
-
-diff --git a/nc_test4/tst_nc4perf.c b/nc_test4/tst_nc4perf.c
-index 47af70e..3528b82 100644
---- a/nc_test4/tst_nc4perf.c
-+++ b/nc_test4/tst_nc4perf.c
-@@ -244,6 +244,11 @@ int test_pio_4d(size_t cache_size, int facc_type, int access_flag, MPI_Comm comm
- return 0;
- }
-
-+/* Note: When the MPI-POSIX VFD is not compiled in to HDF5, the NC_MPIPOSIX
-+ * flag will be aliased to the NC_MPIIO flag within the library, and
-+ * therefore this test will exercise the aliasing, with the MPI-IO VFD,
-+ * under that configuration. -QAK
-+ */
- #define NUM_MODES 2
- #define NUM_FACC 2
- #define NUM_CHUNK_COMBOS_2D 3
-diff --git a/nc_test4/tst_parallel3.c b/nc_test4/tst_parallel3.c
-index 27f9c98..9fa534f 100644
---- a/nc_test4/tst_parallel3.c
-+++ b/nc_test4/tst_parallel3.c
-@@ -129,6 +129,11 @@ int main(int argc, char **argv)
- if (mpi_rank == 0)
- SUMMARIZE_ERR;
-
-+/* Note: When the MPI-POSIX VFD is not compiled in to HDF5, the NC_MPIPOSIX
-+ * flag will be aliased to the NC_MPIIO flag within the library, and
-+ * therefore this test will exercise the aliasing, with the MPI-IO VFD,
-+ * under that configuration. -QAK
-+ */
- if (mpi_rank == 0)
- printf("*** Testing parallel IO for raw-data with MPIPOSIX-IO (driver)...");
- facc_type = NC_NETCDF4|NC_MPIPOSIX;
---
-2.0.3
-
next reply other threads:[~2021-02-27 15:38 UTC|newest]
Thread overview: 3+ messages / expand[flat|nested] mbox.gz Atom feed top
2021-02-27 15:38 Conrad Kostecki [this message]
-- strict thread matches above, loose matches on Subject: below --
2023-03-17 10:40 [gentoo-commits] repo/gentoo:master commit in: sci-libs/netcdf/files/ Andrew Ammerlaan
2017-01-29 20:10 David Seifert
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=1614440178.6552a105bd9efbcd159a05f851a8417ee69a8646.conikost@gentoo \
--to=conikost@gentoo.org \
--cc=gentoo-commits@lists.gentoo.org \
--cc=gentoo-dev@lists.gentoo.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox