From: "Horea Christian" <horea.christ@gmail.com>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/barrnap/
Date: Sun, 27 Sep 2020 07:57:37 +0000 (UTC) [thread overview]
Message-ID: <1601193392.048c61f03abe33efb441bb6aa06514e10e7629de.chymera@gentoo> (raw)
commit: 048c61f03abe33efb441bb6aa06514e10e7629de
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sun Sep 27 07:56:32 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sun Sep 27 07:56:32 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=048c61f0
sci-biology/barrnap: version bump 0.9
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/barrnap/barrnap-0.3.ebuild | 40 ----------------------
.../{barrnap-0.4.ebuild => barrnap-0.9.ebuild} | 8 ++---
2 files changed, 4 insertions(+), 44 deletions(-)
diff --git a/sci-biology/barrnap/barrnap-0.3.ebuild b/sci-biology/barrnap/barrnap-0.3.ebuild
deleted file mode 100644
index be281351f..000000000
--- a/sci-biology/barrnap/barrnap-0.3.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit perl-module
-
-DESCRIPTION="Predict Bacterial and Archaeal rRNA genes and output in GFF3 format"
-HOMEPAGE="http://www.vicbioinformatics.com/software.barrnap.shtml"
-SRC_URI="http://www.vicbioinformatics.com/"${P}".tar.gz"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-# contains bundled binaries of hmmer-3.1 (dev version)
-# needs >=perl-5.6
-
-DEPEND=""
-RDEPEND="${DEPEND}
- dev-lang/perl:=
- sci-biology/nesoni"
-
-src_install(){
- # the below recreates the whole layout
- insinto /usr/share/"${PN}"
- doins barrnap
- chmod a+rx "${ED}"/usr/share/"${PN}"/barrnap
- insinto /usr/share/"${PN}"/binaries
- doins binaries/nhmmer.linux
- chmod a+rx "${ED}"/usr/share/"${PN}"/binaries/nhmmer.linux
- insinto /usr/share/"${PN}"/db
- doins db/*
- insinto /usr/share/examples
- doins examples/*
-
- echo PATH=/usr/share/"${PN}":$PATH > "${S}"/99barrnap
- doenvd "${S}"/99barrnap
-}
diff --git a/sci-biology/barrnap/barrnap-0.4.ebuild b/sci-biology/barrnap/barrnap-0.9.ebuild
similarity index 87%
rename from sci-biology/barrnap/barrnap-0.4.ebuild
rename to sci-biology/barrnap/barrnap-0.9.ebuild
index f4559fddc..e60736e57 100644
--- a/sci-biology/barrnap/barrnap-0.4.ebuild
+++ b/sci-biology/barrnap/barrnap-0.9.ebuild
@@ -1,13 +1,13 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
inherit perl-module
DESCRIPTION="Predict Bacterial and Archaeal rRNA genes and output in GFF3 format"
HOMEPAGE="http://www.vicbioinformatics.com/software.barrnap.shtml"
-SRC_URI="http://www.vicbioinformatics.com/"${P}".tar.gz"
+SRC_URI="https://github.com/tseemann/barrnap/archive/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="GPL-3"
SLOT="0"
@@ -20,7 +20,7 @@ IUSE=""
DEPEND=""
RDEPEND="${DEPEND}
dev-lang/perl:=
- sci-biology/nesoni"
+ "
src_install(){
# the below recreates the whole layout
next reply other threads:[~2020-09-27 7:57 UTC|newest]
Thread overview: 9+ messages / expand[flat|nested] mbox.gz Atom feed top
2020-09-27 7:57 Horea Christian [this message]
-- strict thread matches above, loose matches on Subject: below --
2023-02-17 20:50 [gentoo-commits] proj/sci:master commit in: sci-biology/barrnap/ Horea Christian
2021-01-20 8:40 Andrew Ammerlaan
2017-04-24 23:07 Martin Mokrejs
2017-04-20 17:32 Martin Mokrejs
2015-04-27 10:58 Martin Mokrejs
2015-01-07 21:47 Martin Mokrejs
2014-06-26 13:49 Martin Mokrejs
2014-04-15 8:54 Martin Mokrejs
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