From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-libs/libmaus2/
Date: Tue, 22 Jan 2019 15:18:14 +0000 (UTC) [thread overview]
Message-ID: <1548170278.458e1564c2fa03fefffd8a8f9dc8975d95f26c3f.mmokrejs@gentoo> (raw)
commit: 458e1564c2fa03fefffd8a8f9dc8975d95f26c3f
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Jan 22 15:17:58 2019 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Jan 22 15:17:58 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=458e1564
sci-libs/libmaus2: upstream moved from github to gitlab
https://github.com/gt1/libmaus2/issues/28#issuecomment-456336598
Package-Manager: Portage-2.3.56, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz>
.../{libmaus2-2.0.499.ebuild => libmaus2-2.0.587.ebuild} | 15 +++++++--------
sci-libs/libmaus2/libmaus2-9999.ebuild | 11 +++++------
2 files changed, 12 insertions(+), 14 deletions(-)
diff --git a/sci-libs/libmaus2/libmaus2-2.0.499.ebuild b/sci-libs/libmaus2/libmaus2-2.0.587.ebuild
similarity index 70%
rename from sci-libs/libmaus2/libmaus2-2.0.499.ebuild
rename to sci-libs/libmaus2/libmaus2-2.0.587.ebuild
index cebe44161..1c61df056 100644
--- a/sci-libs/libmaus2/libmaus2-2.0.499.ebuild
+++ b/sci-libs/libmaus2/libmaus2-2.0.587.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -7,36 +7,35 @@ inherit autotools
DESCRIPTION="Library for biobambam2"
HOMEPAGE="https://github.com/gt1/libmaus"
-SRC_URI="https://github.com/gt1/libmaus2/archive/2.0.499-release-20180606122508.tar.gz"
+SRC_URI="https://gitlab.com/german.tischler/libmaus2/-/archive/master/${P}.tar.gz"
LICENSE="BSD-2 GPL-2 GPL-3 MIT ZLIB" # BUG: incomplete list of licenses, see AUTHORS
SLOT="0"
-KEYWORDS=""
+KEYWORDS="~amd64 ~x86"
IUSE="cpu_flags_x86_ssse3 cpu_flags_x86_sse4_1 cpu_flags_x86_sse4_2"
DEPEND="
!sci-libs/libmaus
- sci-libs/io_lib
+ >=sci-libs/io_lib-1.14.11
app-arch/snappy
- sci-biology/seqan
sci-libs/fftw
sci-libs/hdf5
net-libs/gnutls
dev-libs/nettle"
# --with-daligner
# --with-irods
-S="${WORKDIR}"/libmaus2-2.0.499-release-20180606122508
+S="${WORKDIR}"/libmaus2-master-27828cd78121d5e4b19c263c5527e462360f5901
src_configure(){
local CONFIG_OPTS
use cpu_flags_x86_ssse3 && CONFIG_OPTS+=( --enable-ssse3 )
( use cpu_flags_x86_sse4_1 || use cpu_flags_x86_sse4_2 ) && CONFIG_OPTS+=( --enable-sse4 )
- econf --with-snappy --with-seqan --with-io_lib $CONFIG_OPTS \
+ econf --with-snappy --with-io_lib $CONFIG_OPTS \
--with-lzma --with-gnutls --with-nettle --with-hdf5 --with-gmp --with-fftw
}
pkg_postinst(){
- einfo "The io_lib, snappy and seqan dependencies are not strictly needed"
+ einfo "The io_lib, snappy dependencies are not strictly needed"
einfo "but were forced for optimal libmaus2 performance."
einfo "igzip is only used if gzip level is set to 11."
}
diff --git a/sci-libs/libmaus2/libmaus2-9999.ebuild b/sci-libs/libmaus2/libmaus2-9999.ebuild
index 01aa74a92..c371d5432 100644
--- a/sci-libs/libmaus2/libmaus2-9999.ebuild
+++ b/sci-libs/libmaus2/libmaus2-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -7,7 +7,7 @@ inherit autotools git-r3
DESCRIPTION="Library for biobambam2"
HOMEPAGE="https://github.com/gt1/libmaus"
-EGIT_REPO_URI="https://github.com/gt1/libmaus2.git"
+EGIT_REPO_URI="https://gitlab.com/german.tischler/libmaus2"
LICENSE="BSD-2 GPL-2 GPL-3 MIT ZLIB" # BUG: incomplete list of licenses, see AUTHORS
SLOT="0"
@@ -16,9 +16,8 @@ IUSE="cpu_flags_x86_ssse3 cpu_flags_x86_sse4_1 cpu_flags_x86_sse4_2"
DEPEND="
!sci-libs/libmaus
- sci-libs/io_lib
+ >=sci-libs/io_lib-1.14.11
app-arch/snappy
- sci-biology/seqan
sci-libs/fftw
sci-libs/hdf5
net-libs/gnutls
@@ -35,12 +34,12 @@ src_configure(){
local CONFIG_OPTS
use cpu_flags_x86_ssse3 && CONFIG_OPTS+=( --enable-ssse3 )
( use cpu_flags_x86_sse4_1 || use cpu_flags_x86_sse4_2 ) && CONFIG_OPTS+=( --enable-sse4 )
- econf --with-snappy --with-seqan --with-io_lib $CONFIG_OPTS \
+ econf --with-snappy --with-io_lib $CONFIG_OPTS \
--with-lzma --with-gnutls --with-nettle --with-hdf5 --with-gmp --with-fftw
}
pkg_postinst(){
- einfo "The io_lib, snappy and seqan dependencies are not strictly needed"
+ einfo "The io_lib, snappy dependencies are not strictly needed"
einfo "but were forced for optimal libmaus2 performance."
einfo "igzip is only used if gzip level is set to 11."
}
next reply other threads:[~2019-01-22 15:18 UTC|newest]
Thread overview: 12+ messages / expand[flat|nested] mbox.gz Atom feed top
2019-01-22 15:18 Martin Mokrejs [this message]
-- strict thread matches above, loose matches on Subject: below --
2021-12-16 10:57 [gentoo-commits] proj/sci:master commit in: sci-libs/libmaus2/ Andrew Ammerlaan
2020-09-28 7:31 Horea Christian
2020-09-28 7:31 Horea Christian
2019-12-30 15:37 Martin Mokrejs
2019-12-30 15:20 Martin Mokrejs
2019-12-30 15:14 Martin Mokrejs
2018-12-14 11:41 Martin Mokrejs
2017-04-29 19:25 Martin Mokrejs
2017-04-18 12:09 Martin Mokrejs
2016-07-15 9:06 Martin Mokrejs
2016-07-14 18:42 Martin Mokrejs
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=1548170278.458e1564c2fa03fefffd8a8f9dc8975d95f26c3f.mmokrejs@gentoo \
--to=mmokrejs@fold.natur.cuni.cz \
--cc=gentoo-commits@lists.gentoo.org \
--cc=gentoo-dev@lists.gentoo.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox