From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/
Date: Tue, 11 Apr 2017 08:41:42 +0000 (UTC) [thread overview]
Message-ID: <1491900088.ad511c8fb80754d29a9fa8e2b10e87be87d073ad.mmokrejs@gentoo> (raw)
commit: ad511c8fb80754d29a9fa8e2b10e87be87d073ad
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Apr 11 08:41:28 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Apr 11 08:41:28 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ad511c8f
sci-biology/ncbi-tools++: add note on idfetch collision by upstream
Package-Manager: Portage-2.3.5, Repoman-2.3.2
sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild | 6 ++++++
1 file changed, 6 insertions(+)
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
index ec3852d76..3f1fc7bd1 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
@@ -362,6 +362,12 @@ src_install() {
mv -f "${ED}"/usr/bin/test_regexp "${ED}"/usr/bin/test_regexp+ # drop the eventually mistakenly compiled binaries
mv "${ED}"/usr/bin/vecscreen "${ED}"/usr/bin/vecscreen+
mv "${ED}"/usr/bin/seedtop "${ED}"/usr/bin/seedtop+
+ #
+ # idfetch collides with idfetch from ncbi-tools-2.2.26
+ # Although the two idfetch implementations do deliberately have several
+ # options in common, the C++ version is not yet a full drop-in replacement
+ # for the C version (and will never entirely be, due to fundamental
+ # differences between the two toolkits' argument-parsing conventions).
mv "${ED}"/usr/bin/idfetch "${ED}"/usr/bin/idfetch+ # new in ncbi-tools++-18.0.0
echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}" > ${S}/99${PN}
next reply other threads:[~2017-04-11 8:41 UTC|newest]
Thread overview: 49+ messages / expand[flat|nested] mbox.gz Atom feed top
2017-04-11 8:41 Martin Mokrejs [this message]
-- strict thread matches above, loose matches on Subject: below --
2022-01-25 19:15 [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/ Andrew Ammerlaan
2021-08-31 9:45 Andrew Ammerlaan
2021-07-03 10:44 Andrew Ammerlaan
2021-03-16 18:49 Andrew Ammerlaan
2021-03-16 18:49 Andrew Ammerlaan
2021-02-01 4:33 Andrew Ammerlaan
2021-01-19 17:16 Andrew Ammerlaan
2021-01-13 21:06 Andrew Ammerlaan
2021-01-10 19:09 Andrew Ammerlaan
2021-01-05 18:22 Andrew Ammerlaan
2019-03-30 6:42 Martin Mokrejs
2019-03-30 0:13 Martin Mokrejs
2017-03-27 5:35 Martin Mokrejs
2017-03-14 23:08 Martin Mokrejs
2016-12-03 11:34 Martin Mokrejs
2016-08-23 20:17 Justin Lecher
2016-08-23 20:17 Justin Lecher
2016-01-06 8:49 Justin Lecher
2015-07-17 0:40 Andrew Savchenko
2015-06-24 9:51 Justin Lecher
2015-04-17 21:59 Martin Mokrejs
2015-02-18 16:41 Justin Lecher
2014-10-10 6:27 Justin Lecher
2014-06-26 21:26 Martin Mokrejs
2014-06-26 21:06 Martin Mokrejs
2014-06-26 20:45 Martin Mokrejs
2014-06-26 19:49 Martin Mokrejs
2014-06-26 19:04 Martin Mokrejs
2014-06-26 17:31 Martin Mokrejs
2014-06-26 15:09 Martin Mokrejs
2014-06-26 14:38 Martin Mokrejs
2014-06-26 14:32 Martin Mokrejs
2014-06-26 13:30 Martin Mokrejs
2014-06-25 21:02 Martin Mokrejs
2014-06-23 16:18 Martin Mokrejs
2014-06-02 12:08 Martin Mokrejs
2014-05-06 16:44 Justin Lecher
2014-03-25 10:49 Martin Mokrejs
2013-09-14 8:44 Martin Mokrejs
2013-09-13 20:23 Martin Mokrejs
2013-09-13 20:21 Martin Mokrejs
2013-06-12 20:07 Justin Lecher
2013-06-12 20:04 Justin Lecher
2013-04-01 13:26 Justin Lecher
2013-03-03 17:52 Justin Lecher
2013-03-03 17:52 Justin Lecher
2013-01-29 21:23 Justin Lecher
2013-01-07 23:00 Martin Mokrejs
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