From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
Date: Thu, 23 Mar 2017 18:28:28 +0000 (UTC) [thread overview]
Message-ID: <1490293688.0ece3b3803a4d4be8aeeb140f51b3b46dee6ee6f.mmokrejs@gentoo> (raw)
commit: 0ece3b3803a4d4be8aeeb140f51b3b46dee6ee6f
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Mar 23 18:28:08 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Mar 23 18:28:08 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0ece3b38
sci-biology/ncbi-tools++: yet another linking fix
Package-Manager: Portage-2.3.3, Repoman-2.3.1
.../ncbi-tools++-18.0.0-fix-app-convert_seq-linking.patch | 11 +++++++++++
sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild | 1 +
2 files changed, 12 insertions(+)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-convert_seq-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-convert_seq-linking.patch
new file mode 100644
index 000000000..e495c9645
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-convert_seq-linking.patch
@@ -0,0 +1,11 @@
+--- ncbi_cxx--18_0_0/src/app/convert_seq/Makefile.convert_seq.app.ori 2017-03-23 19:24:31.534280319 +0100
++++ ncbi_cxx--18_0_0/src/app/convert_seq/Makefile.convert_seq.app 2017-03-23 19:25:14.395360214 +0100
+@@ -2,7 +2,7 @@
+
+ APP = convert_seq
+ SRC = convert_seq
+-LIB = $(ncbi_xloader_wgs) $(SRAREAD_LIBS) xobjwrite \
++LIB = $(ncbi_xloader_wgs) $(SRAREAD_LIBS) xobjwrite variation_utils \
+ $(OBJREAD_LIBS) $(XFORMAT_LIBS) xalnmgr xobjutil tables xregexp \
+ $(PCRE_LIB) $(OBJMGR_LIBS)
+
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
index 7a70e8f5e..ce5b4ddb8 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
@@ -118,6 +118,7 @@ src_prepare() {
"${FILESDIR}"/${P}-fix-apps-blast-linking.patch
"${FILESDIR}"/${P}-fix-sample-app-cgi-linking.patch
"${FILESDIR}"/${P}-fix-app-compartp-linking.patch
+ "${FILESDIR}"/${P}-fix-app-convert_seq-linking.patch
)
#ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch
epatch ${PATCHES[@]}
next reply other threads:[~2017-03-23 18:28 UTC|newest]
Thread overview: 30+ messages / expand[flat|nested] mbox.gz Atom feed top
2017-03-23 18:28 Martin Mokrejs [this message]
-- strict thread matches above, loose matches on Subject: below --
2023-05-02 12:15 [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/ Andrew Ammerlaan
2019-04-05 15:27 Martin Mokrejs
2017-03-27 0:44 Martin Mokrejs
2017-03-26 22:48 Martin Mokrejs
2017-03-26 20:37 Martin Mokrejs
2017-03-23 21:28 Martin Mokrejs
2017-03-23 17:17 Martin Mokrejs
2017-03-22 22:36 Martin Mokrejs
2016-12-02 23:28 Martin Mokrejs
2014-09-16 4:07 Christoph Junghans
2014-06-26 20:42 Martin Mokrejs
2014-06-25 23:24 Martin Mokrejs
2014-06-25 21:57 Martin Mokrejs
2014-06-25 20:59 Martin Mokrejs
2014-06-25 15:00 Martin Mokrejs
2014-06-23 20:34 Martin Mokrejs
2014-06-23 16:10 Martin Mokrejs
2014-01-25 16:25 Justin Lecher
2013-09-14 8:17 Martin Mokrejs
2013-09-13 22:17 Martin Mokrejs
2013-09-13 22:05 Martin Mokrejs
2013-09-13 21:27 Martin Mokrejs
2013-09-13 16:51 Martin Mokrejs
2013-09-13 16:45 Martin Mokrejs
2013-09-13 16:08 Martin Mokrejs
2013-01-30 17:08 Justin Lecher
2013-01-07 22:13 Martin Mokrejs
2013-01-07 17:09 Martin Mokrejs
2012-12-28 19:19 Martin Mokrejs
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