From: "Justin Lecher" <jlec@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
Date: Wed, 24 Jun 2015 09:51:56 +0000 (UTC) [thread overview]
Message-ID: <1435082618.8b2c35ac92ac6644a09d897c1616ed3753396bff.jlec@gentoo> (raw)
commit: 8b2c35ac92ac6644a09d897c1616ed3753396bff
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 23 18:03:38 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 23 18:03:38 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8b2c35ac
sci-mathematics/petsc: Avoid a sandbox violation, bug #548498
Package-Manager: portage-2.2.18
sci-mathematics/petsc/ChangeLog | 4 ++++
sci-mathematics/petsc/petsc-3.5.3.ebuild | 7 +++++++
sci-mathematics/petsc/petsc-3.6.0.ebuild | 7 +++++++
3 files changed, 18 insertions(+)
diff --git a/sci-mathematics/petsc/ChangeLog b/sci-mathematics/petsc/ChangeLog
index 858b694..1f8dcbb 100644
--- a/sci-mathematics/petsc/ChangeLog
+++ b/sci-mathematics/petsc/ChangeLog
@@ -2,6 +2,10 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 23 Jun 2015; Matthias Maier <tamiko@gentoo.org> petsc-3.5.3.ebuild,
+ petsc-3.6.0.ebuild:
+ sci-mathematics/petsc: Avoid a sandbox violation, bug #548498
+
*petsc-3.6.0 (23 Jun 2015)
23 Jun 2015; Matthias Maier <tamiko@gentoo.org>
diff --git a/sci-mathematics/petsc/petsc-3.5.3.ebuild b/sci-mathematics/petsc/petsc-3.5.3.ebuild
index 09e5bfb..c7f0269 100644
--- a/sci-mathematics/petsc/petsc-3.5.3.ebuild
+++ b/sci-mathematics/petsc/petsc-3.5.3.ebuild
@@ -74,6 +74,13 @@ src_prepare() {
}
src_configure() {
+ # bug 548498
+ # PETSc runs mpi processes during configure that result in a sandbox
+ # violation by trying to open /proc/mtrr rw. This is not easy to
+ # mitigate because it happens in libpciaccess.so called by libhwloc.so,
+ # which is used by libmpi.so.
+ addpredict /proc/mtrr
+
# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
petsc_enable() {
use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
diff --git a/sci-mathematics/petsc/petsc-3.6.0.ebuild b/sci-mathematics/petsc/petsc-3.6.0.ebuild
index 6c96de3..d7ee394 100644
--- a/sci-mathematics/petsc/petsc-3.6.0.ebuild
+++ b/sci-mathematics/petsc/petsc-3.6.0.ebuild
@@ -77,6 +77,13 @@ src_prepare() {
}
src_configure() {
+ # bug 548498
+ # PETSc runs mpi processes during configure that result in a sandbox
+ # violation by trying to open /proc/mtrr rw. This is not easy to
+ # mitigate because it happens in libpciaccess.so called by libhwloc.so,
+ # which is used by libmpi.so.
+ addpredict /proc/mtrr
+
# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
petsc_enable() {
use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
next reply other threads:[~2015-06-24 9:52 UTC|newest]
Thread overview: 59+ messages / expand[flat|nested] mbox.gz Atom feed top
2015-06-24 9:51 Justin Lecher [this message]
-- strict thread matches above, loose matches on Subject: below --
2019-07-12 12:12 [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/ Matthias Maier
2019-07-12 11:19 Matthias Maier
2019-07-12 11:19 Matthias Maier
2019-07-12 11:19 Matthias Maier
2019-05-13 15:02 Matthias Maier
2019-03-09 6:07 Matthias Maier
2018-09-17 15:41 Matthias Maier
2018-09-17 15:41 Matthias Maier
2018-09-17 15:41 Matthias Maier
2018-08-31 15:39 Matthias Maier
2018-08-31 15:39 Matthias Maier
2018-05-24 1:21 Matthias Maier
2018-04-23 14:38 Matthias Maier
2018-04-23 1:55 Matthias Maier
2018-03-29 22:16 Matthias Maier
2018-03-19 3:49 Matthias Maier
2018-03-19 3:40 Matthias Maier
2017-10-03 12:58 Andrew Savchenko
2017-10-03 12:58 Andrew Savchenko
2017-01-08 11:03 Marius Brehler
2016-11-24 10:55 Marius Brehler
2016-08-31 6:56 Marius Brehler
2016-08-31 6:56 Marius Brehler
2016-07-12 19:57 Marius Brehler
2016-07-12 19:57 Marius Brehler
2016-07-12 19:57 Marius Brehler
2016-04-23 23:21 Christoph Junghans
2016-04-23 23:21 Christoph Junghans
2015-12-31 8:48 Justin Lecher
2015-09-01 10:26 Justin Lecher
2014-09-16 17:01 Christoph Junghans
2014-09-01 19:47 Jauhien Piatlicki
2014-09-01 13:06 Jauhien Piatlicki
2014-08-10 8:05 Justin Lecher
2014-01-06 18:33 Justin Lecher
2013-02-22 10:15 Justin Lecher
2013-02-10 22:11 Jens-Malte Gottfried
2013-01-07 22:16 Jens-Malte Gottfried
2012-10-05 14:09 Jens-Malte Gottfried
2012-06-09 6:35 Jens-Malte Gottfried
2012-05-23 19:56 Kacper Kowalik
2012-03-23 18:33 Jens-Malte Gottfried
2012-03-06 23:09 Jens-Malte Gottfried
2012-03-06 22:15 Jens-Malte Gottfried
2012-03-05 16:11 Jens-Malte Gottfried
2012-03-04 21:16 Jens-Malte Gottfried
2012-03-04 15:19 Jens-Malte Gottfried
2012-03-04 14:31 Jens-Malte Gottfried
2012-03-03 21:39 Jens-Malte Gottfried
2012-03-03 16:02 Jens-Malte Gottfried
2012-03-03 14:28 Jens-Malte Gottfried
2012-03-03 12:37 Jens-Malte Gottfried
2012-03-03 12:37 Jens-Malte Gottfried
2012-02-28 20:24 Justin Lecher
2012-01-23 6:35 Sebastien Fabbro
2011-06-24 17:09 Justin Lecher
2011-06-21 11:54 Justin Lecher
2011-04-19 6:44 Thomas Kahle
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