From: "Justin Lecher" <jlec@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/kallisto/
Date: Sat, 23 May 2015 15:53:02 +0000 (UTC) [thread overview]
Message-ID: <1432230024.206678a23fa5c9e15cac30b35b6951d6426551f5.jlec@gentoo> (raw)
commit: 206678a23fa5c9e15cac30b35b6951d6426551f5
Author: layman <layman <AT> localhost>
AuthorDate: Thu May 21 17:40:24 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu May 21 17:40:24 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=206678a2
sci-biology/kallisto: add kallisto
Package-Manager: portage-2.2.14-prefix
sci-biology/kallisto/ChangeLog | 10 ++++++++++
sci-biology/kallisto/kallisto-0.42.1.ebuild | 19 +++++++++++++++++++
sci-biology/kallisto/kallisto-9999.ebuild | 20 ++++++++++++++++++++
sci-biology/kallisto/metadata.xml | 9 +++++++++
4 files changed, 58 insertions(+)
diff --git a/sci-biology/kallisto/ChangeLog b/sci-biology/kallisto/ChangeLog
new file mode 100644
index 0000000..6b15b36
--- /dev/null
+++ b/sci-biology/kallisto/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/kallisto
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*kallisto-0.42.1 (21 May 2015)
+*kallisto-9999 (21 May 2015)
+
+ 21 May 2015; Michael Schubert <mschu.dev@gmail.com> +kallisto-0.42.1.ebuild,
+ +kallisto-9999.ebuild, +metadata.xml:
+ sci-biology/kallisto: add kallisto
diff --git a/sci-biology/kallisto/kallisto-0.42.1.ebuild b/sci-biology/kallisto/kallisto-0.42.1.ebuild
new file mode 100644
index 0000000..dfc4eaf
--- /dev/null
+++ b/sci-biology/kallisto/kallisto-0.42.1.ebuild
@@ -0,0 +1,19 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit cmake-utils
+
+DESCRIPTION="Near-optimal RNA-Seq quantification"
+HOMEPAGE="http://pachterlab.github.io/kallisto/"
+SRC_URI="https://github.com/pachterlab/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="all-rights-reserved"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+DEPEND="sci-libs/hdf5"
+RDEPEND="${DEPEND}"
diff --git a/sci-biology/kallisto/kallisto-9999.ebuild b/sci-biology/kallisto/kallisto-9999.ebuild
new file mode 100644
index 0000000..cc5b269
--- /dev/null
+++ b/sci-biology/kallisto/kallisto-9999.ebuild
@@ -0,0 +1,20 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit git-r3 cmake-utils
+
+DESCRIPTION="Near-optimal RNA-Seq quantification"
+HOMEPAGE="http://pachterlab.github.io/kallisto/"
+SRC_URI=""
+EGIT_REPO_URI="https://github.com/pachterlab/kallisto.git"
+
+LICENSE="all-rights-reserved"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+DEPEND="sci-libs/hdf5"
+RDEPEND="${DEPEND}"
diff --git a/sci-biology/kallisto/metadata.xml b/sci-biology/kallisto/metadata.xml
new file mode 100644
index 0000000..b7551a6
--- /dev/null
+++ b/sci-biology/kallisto/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mschu.dev@gmail.com</email>
+ <name>Michael Schubert</name>
+ </maintainer>
+</pkgmetadata>
next reply other threads:[~2015-05-23 15:53 UTC|newest]
Thread overview: 5+ messages / expand[flat|nested] mbox.gz Atom feed top
2015-05-23 15:53 Justin Lecher [this message]
-- strict thread matches above, loose matches on Subject: below --
2016-02-28 10:43 [gentoo-commits] proj/sci:master commit in: sci-biology/kallisto/ Justin Lecher
2016-02-28 10:43 Justin Lecher
2016-06-30 21:29 Martin Mokrejs
2016-07-02 8:21 Justin Lecher
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