public inbox for gentoo-commits@lists.gentoo.org
 help / color / mirror / Atom feed
From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/BBmap/
Date: Thu,  5 Mar 2015 23:53:50 +0000 (UTC)	[thread overview]
Message-ID: <1425599596.a685e8ebaa1adefe32f5dd6db4b3e38c93b1cd07.mmokrejs@gentoo> (raw)

commit:     a685e8ebaa1adefe32f5dd6db4b3e38c93b1cd07
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Mar  5 23:53:16 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Mar  5 23:53:16 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=a685e8eb

version bump

Package-Manager: portage-2.2.15

 .../BBmap/{BBmap-31.40.ebuild => BBmap-34.56.ebuild}    | 17 +++++++++++++----
 sci-biology/BBmap/ChangeLog                             |  6 ++++++
 2 files changed, 19 insertions(+), 4 deletions(-)

diff --git a/sci-biology/BBmap/BBmap-31.40.ebuild b/sci-biology/BBmap/BBmap-34.56.ebuild
similarity index 62%
rename from sci-biology/BBmap/BBmap-31.40.ebuild
rename to sci-biology/BBmap/BBmap-34.56.ebuild
index e28c005..674e8f2 100644
--- a/sci-biology/BBmap/BBmap-31.40.ebuild
+++ b/sci-biology/BBmap/BBmap-34.56.ebuild
@@ -6,14 +6,13 @@ EAPI=5
 
 inherit java-pkg-2 java-ant-2
 
-DESCRIPTION="Short read aligner, K-mer-based error-correction and normalization, FASTA/FASTQ conversion"
+DESCRIPTION="Short read aligner, K-mer-based error-correction and normalization, FASTA/Q conversion"
 HOMEPAGE="http://sourceforge.net/projects/bbmap/"
-SRC_URI="http://sourceforge.net/projects/bbmap/files/BBMap_31.40_java7.tar.gz"
-#SRC_URI="http://sourceforge.net/projects/bbmap/files/BBMap_31.40_java6.tar.gz"
+SRC_URI="http://sourceforge.net/projects/bbmap/files/BBMap_"${PV}".tar.gz"
 
 LICENSE="BSD"
 SLOT="0"
-KEYWORDS=""
+KEYWORDS="~amd64"
 IUSE=""
 
 DEPEND="
@@ -23,3 +22,13 @@ RDEPEND="${DEPEND}
 	>=virtual/jre-1.7:*"
 
 S="${WORKDIR}"/bbmap
+
+src_compile(){
+	ant compile || die
+}
+
+src_install(){
+	dobin *.sh
+	dodoc docs/readme.txt
+	java-pkg_dojar lib/BBTools.jar
+}

diff --git a/sci-biology/BBmap/ChangeLog b/sci-biology/BBmap/ChangeLog
index 53acebd..8a90f18 100644
--- a/sci-biology/BBmap/ChangeLog
+++ b/sci-biology/BBmap/ChangeLog
@@ -2,6 +2,12 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*BBmap-34.56 (05 Mar 2015)
+
+  05 Mar 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +BBmap-34.56.ebuild,
+  -BBmap-31.40.ebuild:
+  version bump
+
   18 Feb 2015; Justin Lecher <jlec@gentoo.org> BBmap-31.40.ebuild:
   sci-biology/BBmap: fix SLOT operators
 


             reply	other threads:[~2015-03-05 23:53 UTC|newest]

Thread overview: 18+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2015-03-05 23:53 Martin Mokrejs [this message]
  -- strict thread matches above, loose matches on Subject: below --
2021-01-19 16:26 [gentoo-commits] proj/sci:master commit in: sci-biology/BBmap/ Andrew Ammerlaan
2017-11-21 14:54 Martin Mokrejs
2017-05-11 19:13 Martin Mokrejs
2017-04-03 15:52 Martin Mokrejs
2017-01-28 16:51 Martin Mokrejs
2016-06-22 15:24 Martin Mokrejs
2016-05-20 21:28 Martin Mokrejs
2016-03-12 13:53 Martin Mokrejs
2016-01-06 11:36 Martin Mokrejs
2015-11-19 13:15 Martin Mokrejs
2015-11-15 18:51 Martin Mokrejs
2015-11-13 10:07 Martin Mokrejs
2015-11-12  0:46 Martin Mokrejs
2015-11-12  0:34 Martin Mokrejs
2015-03-09 14:50 Martin Mokrejs
2014-09-16  0:26 Christoph Junghans
2014-03-23 19:34 Martin Mokrejs

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=1425599596.a685e8ebaa1adefe32f5dd6db4b3e38c93b1cd07.mmokrejs@gentoo \
    --to=mmokrejs@fold.natur.cuni.cz \
    --cc=gentoo-commits@lists.gentoo.org \
    --cc=gentoo-dev@lists.gentoo.org \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body. 
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox