From: "Jens-Malte Gottfried" <jmg@godefridus.de>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/files/, sci-mathematics/petsc/
Date: Thu, 24 Jul 2014 21:50:08 +0000 (UTC) [thread overview]
Message-ID: <1406238572.eaa505b7fe3ae5a00cc9d99e1d8f4ab960e66610.jmg@gentoo> (raw)
commit: eaa505b7fe3ae5a00cc9d99e1d8f4ab960e66610
Author: Jens Malte Gottfried <jmgottfried <AT> web <DOT> de>
AuthorDate: Thu Jul 24 21:49:32 2014 +0000
Commit: Jens-Malte Gottfried <jmg <AT> godefridus <DOT> de>
CommitDate: Thu Jul 24 21:49:32 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=eaa505b7
petc-3.5.1 version bump
---
.../petsc/files/petsc-3.5.1-disable-rpath.patch | 16 ++
sci-mathematics/petsc/metadata.xml | 4 +-
sci-mathematics/petsc/petsc-3.5.1.ebuild | 234 +++++++++++++++++++++
3 files changed, 251 insertions(+), 3 deletions(-)
diff --git a/sci-mathematics/petsc/files/petsc-3.5.1-disable-rpath.patch b/sci-mathematics/petsc/files/petsc-3.5.1-disable-rpath.patch
new file mode 100644
index 0000000..0ccf45d
--- /dev/null
+++ b/sci-mathematics/petsc/files/petsc-3.5.1-disable-rpath.patch
@@ -0,0 +1,16 @@
+--- config/BuildSystem/config/setCompilers.py 2013-10-08 19:45:00.581513389 +0200
++++ config/BuildSystem/config/setCompilers.py 2013-05-13 23:35:20.000000000 +0200
+@@ -1303,12 +1303,7 @@
+ for language in languages:
+ flag = '-L'
+ self.pushLanguage(language)
+- # test '-R' before '-rpath' as sun compilers [c,fortran] don't give proper errors with wrong options.
+- if not Configure.isDarwin():
+- testFlags = ['-Wl,-rpath,', '-R','-rpath ' , '-Wl,-R,']
+- else:
+- testFlags = []
+- # test '-R' before '-Wl,-rpath' for SUN compilers [as cc on linux accepts -Wl,-rpath, but f90 & CC do not.
++ testFlags = []
+ if self.isSun(self.framework.getCompiler()):
+ testFlags.insert(0,'-R')
+ for testFlag in testFlags:
diff --git a/sci-mathematics/petsc/metadata.xml b/sci-mathematics/petsc/metadata.xml
index a22c6dc..fc9f3e8 100644
--- a/sci-mathematics/petsc/metadata.xml
+++ b/sci-mathematics/petsc/metadata.xml
@@ -4,14 +4,12 @@
<herd>sci-mathematics</herd>
<use>
<flag name="afterimage">Use Afterstep image library (media-libs/libafterimage)</flag>
+ <flag name="boost">Use boost (dev-libs/boost)</flag>
<flag name="hypre">Use HYPRE (sci-mathematics/hypre) and for preconditioning</flag>
<flag name="complex-scalars">Make scalars complex</flag>
<flag name="sparse">Use suitesparse (sci-libs/suitesparse) including cholmod (sci-libs/cholmod) for sparse factorization</flag>
<flag name="superlu">Use superlu (sci-libs/superlu) for preconditioning</flag>
<flag name="mumps">PLEASE FIX MY DESCRIPTION</flag>
<flag name="scotch">PLEASE FIX MY DESCRIPTION</flag>
- <!-- Disabled:
- <flag name="boost">Use boost (dev-libs/boost)</flag>
- -->
</use>
</pkgmetadata>
diff --git a/sci-mathematics/petsc/petsc-3.5.1.ebuild b/sci-mathematics/petsc/petsc-3.5.1.ebuild
new file mode 100644
index 0000000..e4ea76a
--- /dev/null
+++ b/sci-mathematics/petsc/petsc-3.5.1.ebuild
@@ -0,0 +1,234 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit eutils flag-o-matic fortran-2 toolchain-funcs versionator
+
+MY_P="${PN}-$(replace_version_separator _ -)"
+
+DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
+HOMEPAGE="http://www.mcs.anl.gov/petsc/"
+SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
+
+LICENSE="petsc"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE="afterimage boost complex-scalars cxx debug doc fftw
+ fortran hdf5 hypre mpi mumps scotch sparse superlu threads X"
+# Failed: imagemagick metis
+
+# hypre and superlu curretly exclude each other due to missing linking to hypre
+# if both are enabled
+REQUIRED_USE="
+ afterimage? ( X )
+ hdf5? ( mpi )
+ hypre? ( cxx mpi )
+ mumps? ( mpi scotch )
+ scotch? ( mpi )
+ ^^ ( hypre superlu )
+"
+# imagemagick? ( X )
+
+RDEPEND="
+ virtual/blas
+ virtual/lapack
+ afterimage? ( media-libs/libafterimage )
+ boost? ( dev-libs/boost )
+ fftw? ( sci-libs/fftw[mpi?] )
+ hdf5? ( sci-libs/hdf5[mpi?] )
+ hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
+ mpi? ( virtual/mpi[cxx?,fortran?] )
+ mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
+ scotch? ( sci-libs/scotch[mpi?] )
+ sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
+ superlu? ( sci-libs/superlu )
+ X? ( x11-libs/libX11 )
+"
+# metis? ( sci-libs/parmetis )
+# imagemagick? ( media-gfx/imagemagick )
+
+DEPEND="${RDEPEND}
+ virtual/pkgconfig
+ dev-util/cmake
+"
+# cmake is used for parallel building
+# in some configuration setups, legacy build is used (slow)
+
+#
+# PETSc does not want its Makefiles to be invoked with anything higher than
+# -j1. The underlying build system does automatically invoke a parallel
+# build. This might not be what you want, but *hey* not your choice.
+#
+MAKEOPTS="${MAKEOPTS} -j1"
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+ epatch "${FILESDIR}"/${P%_*}-disable-rpath.patch
+}
+
+src_configure() {
+ # petsc uses --with-blah=1 and --with-blah=0 to en/disable options
+ petsc_enable() {
+ use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
+ }
+ # add external library:
+ # petsc_with use_flag libname libdir
+ # petsc_with use_flag libname include linking_libs
+ petsc_with() {
+ local myuse p=${2:-${1}}
+ if use ${1}; then
+ myuse="--with-${p}=1"
+ if [[ $# -ge 4 ]]; then
+ myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
+ shift 3
+ myuse="${myuse} --with-${p}-lib=$@"
+ else
+ myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
+ fi
+ else
+ myuse="--with-${p}=0"
+ fi
+ echo ${myuse}
+ }
+
+ # select between configure options depending on use flag
+ petsc_select() {
+ use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
+ }
+
+ local mylang
+ local myopt
+
+ use cxx && mylang="cxx" || mylang="c"
+ use debug && myopt="debug" || myopt="opt"
+
+ # environmental variables expected by petsc during build
+ export PETSC_DIR="${S}"
+ export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
+
+ if use debug; then
+ strip-flags
+ filter-flags -O*
+ fi
+
+ # C Support on Cxx builds is enabled if possible
+ # i.e. when not using complex scalars
+ # (no complex type for both available at the same time)
+
+ # run petsc configure script
+ econf \
+ scrollOutput=1 \
+ CFLAGS="${CFLAGS}" \
+ CXXFLAGS="${CXXFLAGS}" \
+ LDFLAGS="${LDFLAGS}" \
+ --with-shared-libraries \
+ --with-single-library \
+ --with-clanguage=${mylang} \
+ $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
+ --with-petsc-arch=${PETSC_ARCH} \
+ --with-precision=double \
+ --with-gnu-compilers \
+ --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
+ $(petsc_enable debug debugging) \
+ $(petsc_enable mpi) \
+ $(petsc_select mpi cc mpicc $(tc-getCC)) \
+ $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
+ $(petsc_enable fortran) \
+ $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
+ $(petsc_enable mpi mpi-compilers) \
+ $(petsc_select complex-scalars scalar-type complex real) \
+ --with-windows-graphics=0 \
+ --with-matlab=0 \
+ --with-cmake=cmake \
+ $(petsc_enable threads pthread) \
+ $(petsc_with afterimage afterimage \
+ /usr/include/libAfterImage -lAfterImage) \
+ $(petsc_with hdf5) \
+ $(petsc_with hypre hypre \
+ /usr/include/hypre -lHYPRE) \
+ $(petsc_with sparse suitesparse) \
+ $(petsc_with superlu superlu \
+ /usr/include/superlu -lsuperlu) \
+ $(petsc_with X x) \
+ $(petsc_with X x11) \
+ $(petsc_with scotch ptscotch \
+ /usr/include/scotch \
+ [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
+ $(petsc_with mumps scalapack \
+ /usr/include/scalapack -lscalapack) \
+ $(petsc_with mumps mumps \
+ /usr/include \
+ [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
+ --with-imagemagick=0 \
+ --with-python=0 \
+ $(petsc_with boost) \
+ $(petsc_with fftw) \
+
+# not yet tested:
+# python bindings, netcdf, fftw
+
+# failed dependencies, perhaps fixed in upstream soon:
+# $(petsc_with metis parmetis) \ # needs metis too (>=5.0.2)
+# $(petsc_with imagemagick imagemagick \
+# /usr/include/ImageMagick $($(tc-getPKG_CONFIG) --libs MagickCore)) \
+# $(petsc_enable threads pthreadclasses) \
+}
+
+src_install() {
+ # petsc install structure is very different from
+ # installing headers to /usr/include/petsc and lib to /usr/lib
+ # it also installs many unneeded executables and scripts
+ # so manual install is easier than cleanup after "emake install"
+ insinto /usr/include/${PN}
+ doins include/*.h*
+ insinto /usr/include/${PN}/${PETSC_ARCH}/include
+ doins ${PETSC_ARCH}/include/*
+ if use fortran; then
+ insinto /usr/include/${PN}/finclude
+ doins include/finclude/*.h
+ fi
+ if ! use mpi ; then
+ insinto /usr/include/${PN}/mpiuni
+ doins include/mpiuni/*.h
+ fi
+ insinto /usr/include/${PN}/conf
+ doins conf/{variables,rules,test}
+ insinto /usr/include/${PN}/${PETSC_ARCH}/conf
+ doins ${PETSC_ARCH}/conf/{petscrules,petscvariables,RDict.db}
+ insinto /usr/include/${PN}/petsc-private
+ doins include/petsc-private/*.h
+
+ # fix configuration files: replace "${S}" by installed location
+ sed -i \
+ -e "s:"${S}"::g" \
+ "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h \
+ "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
+ sed -i \
+ -e "s:usr/lib:usr/$(get_libdir):g" \
+ "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h || die
+
+ # add information about installation directory and
+ # PETSC_ARCH to environmental variables
+ cat >> 99petsc <<- EOF
+ PETSC_ARCH=${PETSC_ARCH}
+ PETSC_DIR=${EPREFIX}/usr/include/${PN}
+ EOF
+ doenvd 99petsc
+
+ dolib.so ${PETSC_ARCH}/lib/*.so
+
+ if use doc ; then
+ einfo "installing documentation (this could take a while)"
+ dodoc docs/manual.pdf
+ dohtml -r docs/*.html docs/changes docs/manualpages
+ fi
+}
+
+pkg_postinst() {
+ elog "The petsc ebuild is still under development."
+ elog "Help us improve the ebuild in:"
+ elog "http://bugs.gentoo.org/show_bug.cgi?id=53386"
+}
next reply other threads:[~2014-07-24 21:50 UTC|newest]
Thread overview: 19+ messages / expand[flat|nested] mbox.gz Atom feed top
2014-07-24 21:50 Jens-Malte Gottfried [this message]
-- strict thread matches above, loose matches on Subject: below --
2019-08-05 6:52 [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/files/, sci-mathematics/petsc/ Matthias Maier
2019-07-12 11:19 Matthias Maier
2018-08-31 15:39 Matthias Maier
2018-04-23 1:21 Matthias Maier
2015-03-14 8:21 Justin Lecher
2015-03-14 8:21 Justin Lecher
2013-10-18 16:19 Christoph Junghans
2013-02-22 10:15 Justin Lecher
2013-02-09 18:30 Jens-Malte Gottfried
2013-01-07 22:06 Jens-Malte Gottfried
2013-01-07 21:58 Jens-Malte Gottfried
2012-06-28 8:25 Jens-Malte Gottfried
2012-06-09 6:16 Jens-Malte Gottfried
2012-03-06 23:09 Jens-Malte Gottfried
2012-03-05 23:09 Sebastien Fabbro
2012-03-04 12:38 Jens-Malte Gottfried
2012-03-01 17:54 Jens-Malte Gottfried
2011-03-19 12:05 Jens-Malte Gottfried
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