From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/artemis/
Date: Tue, 7 Feb 2012 23:45:29 +0000 (UTC) [thread overview]
Message-ID: <11ae7cf4d443b53e4a1f90391c0a743ed5698a6a.mmokrejs@gentoo> (raw)
commit: 11ae7cf4d443b53e4a1f90391c0a743ed5698a6a
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Feb 7 23:44:33 2012 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Feb 7 23:44:33 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=11ae7cf4
sci-biology/artemis: adjust ebuild based on upstream providing a Makefile
(Portage version: 2.1.10.45/git/Linux x86_64, unsigned Manifest commit)
---
sci-biology/artemis/ChangeLog | 4 ++++
sci-biology/artemis/artemis-9999.ebuild | 8 ++++++--
2 files changed, 10 insertions(+), 2 deletions(-)
diff --git a/sci-biology/artemis/ChangeLog b/sci-biology/artemis/ChangeLog
index 8a33496..a87b1e4 100644
--- a/sci-biology/artemis/ChangeLog
+++ b/sci-biology/artemis/ChangeLog
@@ -2,6 +2,10 @@
# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 07 Feb 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ artemis-9999.ebuild:
+ adjust ebuild based on upstream providing a Makefile
+
*artemis-9999 (08 Jan 2012)
08 Jan 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
diff --git a/sci-biology/artemis/artemis-9999.ebuild b/sci-biology/artemis/artemis-9999.ebuild
index ff8d52d..4739ad8 100644
--- a/sci-biology/artemis/artemis-9999.ebuild
+++ b/sci-biology/artemis/artemis-9999.ebuild
@@ -24,16 +24,20 @@ SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
+# uses its own BamView
DEPEND="sci-biology/samtools
- sci-biology/bamview
>=virtual/jdk-1.5
>=dev-java/sun-jdk-1.5
dev-java/ant-core"
RDEPEND="${DEPEND}
>=virtual/jre-1.5"
+# http://www.mail-archive.com/artemis-users@sanger.ac.uk/msg00551.html
+# http://www.mail-archive.com/artemis-users@sanger.ac.uk/msg00561.html
+# http://gmod.org/wiki/Artemis-Chado_Integration_Tutorial
src_compile() {
- ant compile || die
+ emake || die
+ # ant compile || die
einfo "Need to figure out where does the GeneBuilder application come from so that one could use Chado for automated gene prediction pipeline"
}
next reply other threads:[~2012-02-07 23:45 UTC|newest]
Thread overview: 10+ messages / expand[flat|nested] mbox.gz Atom feed top
2012-02-07 23:45 Martin Mokrejs [this message]
-- strict thread matches above, loose matches on Subject: below --
2020-09-27 9:22 [gentoo-commits] proj/sci:master commit in: sci-biology/artemis/ Horea Christian
2017-01-29 14:20 Justin Lecher
2016-03-30 14:26 Martin Mokrejs
2015-06-09 10:25 Martin Mokrejs
2014-03-23 23:02 Martin Mokrejs
2014-03-23 19:19 Martin Mokrejs
2014-01-06 19:27 Justin Lecher
2012-02-07 23:45 Martin Mokrejs
2012-01-08 15:51 Martin Mokrejs
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